ClCG05G000560 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG05G000560
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Mitochondrial glycoprotein family protein LENGTH=227
Location	CG_Chr05 : 691337 .. 692466 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTTTAAATTGTCATGGCTTCTTTGGCTGTACAGCATGGGAGTCTTTAAGTAAGTTGGCGTCAATTTATATTGAAGTTCGTTGTCTCACGTTGTAACTTAAACTGCACAAGAACAACCCAACCCATTTGGTAATGAACTGTTCTGGGTTGTTGGTTTGGTTGGCAGGTTAAAAGAAGTCTGTTAGTTTTTCTCAAATACTCATAGTTTATTGGGTATGCAGCTTATCATTGTATTCTGCACTTGTTGAATCCTTGCAGTTGATTGAATCCTTCATAGTTAATATCACGTTGTTCACTAATCACTCACTAGGGATACTTGCATCTTGCACCTAGCAAATTTGCAGATTTTTAGAAGTTAGTTCTCCTTGTGGCTTTCTTGGTTGATTTGGCTTGTGCTCTTGCATGGCCTGGTTCTGCAGTCATTTGATTTTATTTTTGTGAAAGCCATCTCTTATTAAAATGTATTTGGTGATGCTTGTTCTTCATAATTGCCCTGGTGCCTAAGTGTTATGATGTCAGTTGTTATTGGGTTTAAATGTCATTTGGGATATGTACTCTGGAACTTATCCAATTTACTCTTCGTACATTCTAATGTCTAAACTTGTAGCCGTAACTTGTTCAAAGAAATTAGTCTCTATTAGCCTTCCATTTATGAATTTTGGAAGAATATTCACATTGTATCTTTTCTTGAATGAAAATAAAGATTTGTTGAAAATGCATGGAGTAATATTAGACATTTAAAAGTACATAGACTATGGAACGTGATACAGAGTAGGAGCAAAATATTATTTTAACTTTTTTCTTTTCACAGCATAGATGCCTGTTTCTATGAACCAAGTGGGATTGTGATGTTTTCCGACTTTATGATCTCCATATACTGACAATATTGATCAAATAACCGTTAATGGAGAAGTATGTCATTAGAAACATACACTTCTTCTTCTCTGGATGACCGAGATGTAGTTGAGAAAATGCAAGATGTGCTTCACAATTACAGAGTCGAGCAAGGCATTAAGAAGTCTCTCTTTCTATTTCTTCAAGCATGGCTTTATGTGAAGGAGCATCAAAATGTTATGTGGTCATTCAGATTGGTTGACTCATTCATCAAGGAGCATGAGAACACCTAA

mRNA sequence

ATGTCTTTAAATTGTCATGGCTTCTTTGGCTGTACAGCATGGGAGTCTTTAAAAACATACACTTCTTCTTCTCTGGATGACCGAGATGTAGTTGAGAAAATGCAAGATGTGCTTCACAATTACAGAGTCGAGCAAGGCATTAAGAAGTCTCTCTTTCTATTTCTTCAAGCATGGCTTTATGTGAAGGAGCATCAAAATGTTATGTGGTCATTCAGATTGGTTGACTCATTCATCAAGGAGCATGAGAACACCTAA

Coding sequence (CDS)

ATGTCTTTAAATTGTCATGGCTTCTTTGGCTGTACAGCATGGGAGTCTTTAAAAACATACACTTCTTCTTCTCTGGATGACCGAGATGTAGTTGAGAAAATGCAAGATGTGCTTCACAATTACAGAGTCGAGCAAGGCATTAAGAAGTCTCTCTTTCTATTTCTTCAAGCATGGCTTTATGTGAAGGAGCATCAAAATGTTATGTGGTCATTCAGATTGGTTGACTCATTCATCAAGGAGCATGAGAACACCTAA

Protein sequence

MSLNCHGFFGCTAWESLKTYTSSSLDDRDVVEKMQDVLHNYRVEQGIKKSLFLFLQAWLYVKEHQNVMWSFRLVDSFIKEHENT

Homology

[Close]

BLAST of ClCG05G000560 vs. TrEMBL
Match: A0A0A0KCG3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G046350 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.1e-09
Identity = 34/65 (52.31%), Postives = 47/65 (72.31%), Query Frame = 1


Query: 19  TYTSSSLDDRDVVEKMQDVLHNYRVEQGIKKSLFLFLQAWLYVKEHQNVMWSFRLVDSFI 78
           +Y   + +D D  EKM+D+ HNY  E+G+ +SLF FLQAWLYVKEH+N++  FR V +FI
Sbjct: 164 SYNGPTFEDLD--EKMRDMFHNYIEERGVNESLFPFLQAWLYVKEHRNLLRWFRSVGTFI 223

Query: 79  KEHEN 84
            E +N
Sbjct: 224 YEPKN 226

[Close]

BLAST of ClCG05G000560 vs. TrEMBL
Match: D7M9R6_ARALL (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_328472 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 7.3e-09
Identity = 34/68 (50.00%), Postives = 48/68 (70.59%), Query Frame = 1


Query: 20  YTSSSLDDRDVVEKMQDVLHNYRVEQGIKKSLFLFLQAWLYVKEHQNVMWSFRLVDSFIK 79
           YT  S ++ D  EKM+DV H Y  E+G+ +SLF FLQAWLYVK+H+N++  F+ V +F+ 
Sbjct: 483 YTGPSFEELD--EKMRDVFHGYLEERGVNESLFPFLQAWLYVKDHRNLLRWFKSVGTFVH 542

Query: 80  EH---ENT 85
           E+   ENT
Sbjct: 543 ENPSAENT 548

[Close]

BLAST of ClCG05G000560 vs. TrEMBL
Match: A0A067JSX1_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02865 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.2e-08
Identity = 30/53 (56.60%), Postives = 42/53 (79.25%), Query Frame = 1


Query: 32  EKMQDVLHNYRVEQGIKKSLFLFLQAWLYVKEHQNVMWSFRLVDSFIKEHENT 85
           EKM+D LH+Y  E+G+ +SLF FLQAWLYVK+H+N+M  F+ V  FI E+++T
Sbjct: 167 EKMRDALHSYIEERGVNESLFNFLQAWLYVKDHRNLMRWFKSVGMFINENKST 219

[Close]

BLAST of ClCG05G000560 vs. TrEMBL
Match: A0A067K796_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15497 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.2e-08
Identity = 30/53 (56.60%), Postives = 42/53 (79.25%), Query Frame = 1


Query: 32  EKMQDVLHNYRVEQGIKKSLFLFLQAWLYVKEHQNVMWSFRLVDSFIKEHENT 85
           EKM+D LH+Y  E+G+ +SLF FLQAWLYVK+H+N+M  F+ V  FI E+++T
Sbjct: 133 EKMRDALHSYIEERGVNESLFNFLQAWLYVKDHRNLMRWFKSVGMFINENKST 185

[Close]

BLAST of ClCG05G000560 vs. TrEMBL
Match: Q8LAC7_ARATH (Putative uncharacterized protein OS=Arabidopsis thaliana PE=2 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 2.1e-08
Identity = 33/68 (48.53%), Postives = 48/68 (70.59%), Query Frame = 1


Query: 20  YTSSSLDDRDVVEKMQDVLHNYRVEQGIKKSLFLFLQAWLYVKEHQNVMWSFRLVDSFIK 79
           YT  S ++ D  EKM+DV H +  E+G+ +SLF FLQAWLYVK+H+N++  F+ V +F+ 
Sbjct: 161 YTGPSFEELD--EKMRDVFHGFLEERGVNESLFPFLQAWLYVKDHRNLLRWFKSVGTFVH 220

Query: 80  EH---ENT 85
           E+   ENT
Sbjct: 221 ENPSAENT 226

[Close]

BLAST of ClCG05G000560 vs. TAIR10
Match: AT4G32605.1 (AT4G32605.1 Mitochondrial glycoprotein family protein)

HSP 1 Score: 66.2 bits (160), Expect = 1.1e-11
Identity = 33/68 (48.53%), Postives = 46/68 (67.65%), Query Frame = 1


Query: 20  YTSSSLDDRDVVEKMQDVLHNYRVEQGIKKSLFLFLQAWLYVKEHQNVMWSFRLVDSFIK 79
           YT  S ++ D  EKM+DV H +  E+G+ +SLF FLQAWLYVK+H+N++  F+ V +F+ 
Sbjct: 161 YTGPSFEELD--EKMRDVFHGFLEERGVNESLFPFLQAWLYVKDHRNLLRWFKSVGTFVH 220

Query: 80  EH---ENT 85
           E+   ENT
Sbjct: 221 ENPSAENT 226

[Close]

BLAST of ClCG05G000560 vs. NCBI nr
Match: gi|449446313|ref|XP_004140916.1| (PREDICTED: uncharacterized protein At2g39795, mitochondrial [Cucumis sativus])

HSP 1 Score: 70.5 bits (171), Expect = 1.6e-09
Identity = 34/65 (52.31%), Postives = 47/65 (72.31%), Query Frame = 1


Query: 19  TYTSSSLDDRDVVEKMQDVLHNYRVEQGIKKSLFLFLQAWLYVKEHQNVMWSFRLVDSFI 78
           +Y   + +D D  EKM+D+ HNY  E+G+ +SLF FLQAWLYVKEH+N++  FR V +FI
Sbjct: 164 SYNGPTFEDLD--EKMRDMFHNYIEERGVNESLFPFLQAWLYVKEHRNLLRWFRSVGTFI 223

Query: 79  KEHEN 84
            E +N
Sbjct: 224 YEPKN 226

[Close]

BLAST of ClCG05G000560 vs. NCBI nr
Match: gi|659113531|ref|XP_008456624.1| (PREDICTED: uncharacterized protein At2g39795, mitochondrial [Cucumis melo])

HSP 1 Score: 70.1 bits (170), Expect = 2.1e-09
Identity = 34/65 (52.31%), Postives = 47/65 (72.31%), Query Frame = 1


Query: 19  TYTSSSLDDRDVVEKMQDVLHNYRVEQGIKKSLFLFLQAWLYVKEHQNVMWSFRLVDSFI 78
           +Y   + +D D  EKM+D+ HNY  E+G+ +SLF FLQAWLYVKEH+N++  FR V +FI
Sbjct: 164 SYNGPTFEDLD--EKMRDMFHNYIDERGVNESLFPFLQAWLYVKEHRNLLRWFRSVGTFI 223

Query: 79  KEHEN 84
            E +N
Sbjct: 224 YEPKN 226

[Close]

BLAST of ClCG05G000560 vs. NCBI nr
Match: gi|297798700|ref|XP_002867234.1| (hypothetical protein ARALYDRAFT_328472 [Arabidopsis lyrata subsp. lyrata])

HSP 1 Score: 67.8 bits (164), Expect = 1.0e-08
Identity = 34/68 (50.00%), Postives = 48/68 (70.59%), Query Frame = 1


Query: 20  YTSSSLDDRDVVEKMQDVLHNYRVEQGIKKSLFLFLQAWLYVKEHQNVMWSFRLVDSFIK 79
           YT  S ++ D  EKM+DV H Y  E+G+ +SLF FLQAWLYVK+H+N++  F+ V +F+ 
Sbjct: 483 YTGPSFEELD--EKMRDVFHGYLEERGVNESLFPFLQAWLYVKDHRNLLRWFKSVGTFVH 542

Query: 80  EH---ENT 85
           E+   ENT
Sbjct: 543 ENPSAENT 548

[Close]

BLAST of ClCG05G000560 vs. NCBI nr
Match: gi|802762339|ref|XP_012089956.1| (PREDICTED: uncharacterized protein At2g39795, mitochondrial-like [Jatropha curcas])

HSP 1 Score: 67.0 bits (162), Expect = 1.8e-08
Identity = 30/53 (56.60%), Postives = 42/53 (79.25%), Query Frame = 1


Query: 32  EKMQDVLHNYRVEQGIKKSLFLFLQAWLYVKEHQNVMWSFRLVDSFIKEHENT 85
           EKM+D LH+Y  E+G+ +SLF FLQAWLYVK+H+N+M  F+ V  FI E+++T
Sbjct: 167 EKMRDALHSYIEERGVNESLFNFLQAWLYVKDHRNLMRWFKSVGMFINENKST 219

[Close]

BLAST of ClCG05G000560 vs. NCBI nr
Match: gi|802658407|ref|XP_012080597.1| (PREDICTED: uncharacterized protein At2g39795, mitochondrial-like [Jatropha curcas])

HSP 1 Score: 67.0 bits (162), Expect = 1.8e-08
Identity = 30/53 (56.60%), Postives = 42/53 (79.25%), Query Frame = 1


Query: 32  EKMQDVLHNYRVEQGIKKSLFLFLQAWLYVKEHQNVMWSFRLVDSFIKEHENT 85
           EKM+D LH+Y  E+G+ +SLF FLQAWLYVK+H+N+M  F+ V  FI E+++T
Sbjct: 165 EKMRDALHSYIEERGVNESLFNFLQAWLYVKDHRNLMRWFKSVGMFINENKST 217

The following BLAST results are available for this feature:

BLAST of ClCG05G000560 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KCG3_CUCSA	1.1e-09	52.31	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G046350 PE=4 SV=1	[more]
D7M9R6_ARALL	7.3e-09	50.00	Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRA...	[more]
A0A067JSX1_JATCU	1.2e-08	56.60	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02865 PE=4 SV=1	[more]
A0A067K796_JATCU	1.2e-08	56.60	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15497 PE=4 SV=1	[more]
Q8LAC7_ARATH	2.1e-08	48.53	Putative uncharacterized protein OS=Arabidopsis thaliana PE=2 SV=1	[more]

BLAST of ClCG05G000560 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G32605.1	1.1e-11	48.53	Mitochondrial glycoprotein family protein	[more]

BLAST of ClCG05G000560 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449446313\|ref\|XP_004140916.1\|	1.6e-09	52.31	PREDICTED: uncharacterized protein At2g39795, mitochondrial [Cucumis sativus]	[more]
gi\|659113531\|ref\|XP_008456624.1\|	2.1e-09	52.31	PREDICTED: uncharacterized protein At2g39795, mitochondrial [Cucumis melo]	[more]
gi\|297798700\|ref\|XP_002867234.1\|	1.0e-08	50.00	hypothetical protein ARALYDRAFT_328472 [Arabidopsis lyrata subsp. lyrata]	[more]
gi\|802762339\|ref\|XP_012089956.1\|	1.8e-08	56.60	PREDICTED: uncharacterized protein At2g39795, mitochondrial-like [Jatropha curca...	[more]
gi\|802658407\|ref\|XP_012080597.1\|	1.8e-08	56.60	PREDICTED: uncharacterized protein At2g39795, mitochondrial-like [Jatropha curca...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR003428	MAM33

Vocabulary: **Cellular Component**
Term	Definition
GO:0005759	mitochondrial matrix

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005759	mitochondrial matrix
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG05G000560.1	ClCG05G000560.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003428	Mitochondrial glycoprotein	GENE3D	G3DSA:3.10.280.10		coord: 13..79 score: 3.
IPR003428	Mitochondrial glycoprotein	unknown	SSF54529	Mitochondrial glycoprotein MAM33-like	coord: 29..78 score: 4.9

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG05G000560	Melon (DHL92) v3.6.1	medwcgB416
ClCG05G000560	Silver-seed gourd	carwcgB0122
ClCG05G000560	Silver-seed gourd	carwcgB0964
ClCG05G000560	Silver-seed gourd	carwcgB0968
ClCG05G000560	Cucumber (Chinese Long) v3	cucwcgB225
ClCG05G000560	Cucumber (Chinese Long) v3	cucwcgB413
ClCG05G000560	Watermelon (97103) v2	wcgwmbB210
ClCG05G000560	Watermelon (97103) v2	wcgwmbB229
ClCG05G000560	Wax gourd	wcgwgoB420
ClCG05G000560	Wax gourd	wcgwgoB439
ClCG05G000560	Watermelon (Charleston Gray)	wcgwcgB094
ClCG05G000560	Cucumber (Gy14) v1	cgywcgB377
ClCG05G000560	Cucumber (Gy14) v1	cgywcgB451
ClCG05G000560	Cucurbita maxima (Rimu)	cmawcgB006
ClCG05G000560	Cucurbita maxima (Rimu)	cmawcgB233
ClCG05G000560	Cucurbita maxima (Rimu)	cmawcgB295
ClCG05G000560	Cucurbita maxima (Rimu)	cmawcgB563
ClCG05G000560	Cucurbita maxima (Rimu)	cmawcgB738
ClCG05G000560	Cucurbita maxima (Rimu)	cmawcgB742
ClCG05G000560	Cucurbita moschata (Rifu)	cmowcgB219
ClCG05G000560	Cucurbita moschata (Rifu)	cmowcgB743
ClCG05G000560	Wild cucumber (PI 183967)	cpiwcgB226
ClCG05G000560	Cucumber (Chinese Long) v2	cuwcgB222
ClCG05G000560	Cucumber (Chinese Long) v2	cuwcgB392
ClCG05G000560	Melon (DHL92) v3.5.1	mewcgB030
ClCG05G000560	Melon (DHL92) v3.5.1	mewcgB427
ClCG05G000560	Watermelon (97103) v1	wcgwmB295
ClCG05G000560	Watermelon (97103) v1	wcgwmB286
ClCG05G000560	Cucurbita pepo (Zucchini)	cpewcgB559
ClCG05G000560	Cucurbita pepo (Zucchini)	cpewcgB677
ClCG05G000560	Cucurbita pepo (Zucchini)	cpewcgB787
ClCG05G000560	Bottle gourd (USVL1VR-Ls)	lsiwcgB018
ClCG05G000560	Bottle gourd (USVL1VR-Ls)	lsiwcgB335
ClCG05G000560	Cucumber (Gy14) v2	cgybwcgB203