ClCG04G001030.1 (mRNA) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG04G001030.1
Type	mRNA
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Ycf1
Location	CG_Chr04 : 3259491 .. 3261701 (+)
Sequence length	609

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTCGATATTCTGGTGTCCTAGGCGTAGAGGAACCACACCAATCCATCCTGAACTTAGTGGTTAAACTCTATTACGGTAACGATACTGTAGAGGAGGTCCTATGGAAAAATAACTCGACACCAGGATGATAAAAAGTTGAACACCTCTAATTCTTATTACTTTTCAATATTCAATATCAATATGGAAAAAAATGAAAAATGAAAAGGTCGTCTTATTCAAAACCCCTTCTCTCCCACTTTTCTCTCTCACTTCACACCTTGAAACGCATCGTTCTTATAGAGAGAGAGTCGCTTTTACATCTTAACTCAAAATATAGAGAGAGAGTCGCTTTTACATCTTAACTCAAAAAGGGAAGGATCTTCTCTCTAGGGGTAGGAAAATTATGATCTAGATAGCGAACCCAAAGCTATCGAACTTGGGTGTGGGTCTTTTGTCAAAATGGAATGGCCTTATCTTTTGATTTTTTTCTTTTTCGTTAATGGGTTAAGGGAGGGGGTTATGTTTTAAATTAAATATAGTATACCCAACTCGAATCAACATATTTTTTTGTTTAACGCCCCTAATTCTTCCTCAGCCAGGCTCGAGCAGAATAGCAGAGCAAGTACAAGTATTAGTAGAATAGCAAAAATGTGTTCCTCGTCATTAATATGTTTGCACGCTGTACTTGTGACCTATCGGGAGAATCGGATGACTGTATCAAAGATGCACTTGCTAGTACTAGTATATCTGAGAATTCTTAATTGACCAATTGTAAATAGATCCAGACTATGGAACAAAGGATTATCCTGGACCTACACCGAGGTATTGATGGTGATTCTCAAGTATCGCATAACAGAACTTGATACGATGAGATAGAATGCAATAGAAACAAAGACACAGGGAACGAGTTACCTACACTTAACGGTCAAAGTGAACCCTTTCATTTTGAATTCTTTAATTCAGAATGAATCAAATCTCCCCAAGTAGGATTCGAAGCTACGACCAATTGGTTAATAGCCGACTGCTCTACCACTGAGCTACTAAGGAACAACGATAAATTAGGTCTCAGAGAATTCAATTCTCGTTCTCAACCCATGACTAATATGAGCTTGAGGTTTCCTTTGTAACTCCCGAAACTTCTTCATAGTGGCTTCATTCCATGCCTCATTTCATAAAGAACCTCAAAGTGGCTCTATTTCATTATATTCCATCCATATGCCAATTCCATTCATTTAATATCCATGTGGTGTCATTGAGATAAGAGATGTCGTTTCTAGTCTATTTGTTTCTATTTCTATATATATGGAAAGTTAAAAAATCATCATATAATAATCCAGAAAATACAATAGAAAAGAAAAAGGGAGGTTTGTGATAATTTTAAAATCTTTTATACTAGGTAATCTAGTATCCTTATGCATGAAGATAATCAATTCGGTTGTTGTGGTCGGACTCTATTATGGATTTCTAACCACATTCTCCATAGGGTCCTCTTATCTCTTCCTTCTCCGAGCTCGGGTCATGGAAGAAGGAGCCGAGAAGAAAGTATCAGCAACAACAGGTTTTATTACACAACTCATGATGTTCATATTCATCTATTATGCGTCTCTACATCTAGCATTGGGTAGACCTCATACAATAACTGTCCTATCTCTACCATATCTTTTGTTTCATTTCTTCTAAAACAATCAGAAACATTTTTTTTTACCATGGATCTACTACCAAAAACTCAATGCGTAATCTTAGCATTCAATGTGTATTCCTAAATAATCTTATTTTTCAATTATTCAACAATTTCATTTAACCAAGTTTAATGTTAGTCAGATTAGTCAACATTTCTATATTTCGATGCAACAACAAGATGTTATTTGTAACATGTAGTTTCATTGGTTGGTTAATTGGTCACATTTTATTCATGAAATGAGTTGGATTGATATTAGTTTGGATACAGCAAAATAATTTTATAGAGAAAGTACCTTGTGTCAGAATTGAGAAATTCTATGGCTCGAATCTTTAGTATTCTCTTATTTATTACCTGTGTCTACTATTTAGGCAAAATACTGTCACCCATTGTTACTAAGAAACTGAAAGAAACCTCAGAAATGGAGGAAAAGGGGGAAAGCGAGGAAGAAATAGAGGGAGTCATTGAAGAAAATACTTCTCCTTCCCTTTCTTTTTGGAAGAAAAGGAGGATCCCGACAAAATCGATGAAACAGAAGAGATCTGAGTGA

mRNA sequence

ATGGTTCGATATTCTGGTGTCCTAGGCGTAGAGGAACCACACCAATCCATCCTGAACTTAGTGGTTAAACTCTATTACGGTAACGATACTGTAGAGGAGAATAGCAGAGCAAGTACAAGTATTAGTAGAATAGCAAAAATGTGTTCCTCGTCATTAATATGTTTGCACGCTGTACTTGTGACCTATCGGGAGAATCGGATGACTGTATCAAAGATGCACTTGCTAGTACTAATCCAGACTATGGAACAAAGGATTATCCTGGACCTACACCGAGGTATTGATGGTGATTCTCAAATAATCAATTCGGTTGTTGTGGTCGGACTCTATTATGGATTTCTAACCACATTCTCCATAGGGTCCTCTTATCTCTTCCTTCTCCGAGCTCGGGTCATGGAAGAAGGAGCCGAGAAGAAAGTATCAGCAACAACAGGCAAAATACTGTCACCCATTGTTACTAAGAAACTGAAAGAAACCTCAGAAATGGAGGAAAAGGGGGAAAGCGAGGAAGAAATAGAGGGAGTCATTGAAGAAAATACTTCTCCTTCCCTTTCTTTTTGGAAGAAAAGGAGGATCCCGACAAAATCGATGAAACAGAAGAGATCTGAGTGA

Coding sequence (CDS)

ATGGTTCGATATTCTGGTGTCCTAGGCGTAGAGGAACCACACCAATCCATCCTGAACTTAGTGGTTAAACTCTATTACGGTAACGATACTGTAGAGGAGAATAGCAGAGCAAGTACAAGTATTAGTAGAATAGCAAAAATGTGTTCCTCGTCATTAATATGTTTGCACGCTGTACTTGTGACCTATCGGGAGAATCGGATGACTGTATCAAAGATGCACTTGCTAGTACTAATCCAGACTATGGAACAAAGGATTATCCTGGACCTACACCGAGGTATTGATGGTGATTCTCAAATAATCAATTCGGTTGTTGTGGTCGGACTCTATTATGGATTTCTAACCACATTCTCCATAGGGTCCTCTTATCTCTTCCTTCTCCGAGCTCGGGTCATGGAAGAAGGAGCCGAGAAGAAAGTATCAGCAACAACAGGCAAAATACTGTCACCCATTGTTACTAAGAAACTGAAAGAAACCTCAGAAATGGAGGAAAAGGGGGAAAGCGAGGAAGAAATAGAGGGAGTCATTGAAGAAAATACTTCTCCTTCCCTTTCTTTTTGGAAGAAAAGGAGGATCCCGACAAAATCGATGAAACAGAAGAGATCTGAGTGA

Protein sequence

MVRYSGVLGVEEPHQSILNLVVKLYYGNDTVEENSRASTSISRIAKMCSSSLICLHAVLVTYRENRMTVSKMHLLVLIQTMEQRIILDLHRGIDGDSQIINSVVVVGLYYGFLTTFSIGSSYLFLLRARVMEEGAEKKVSATTGKILSPIVTKKLKETSEMEEKGESEEEIEGVIEENTSPSLSFWKKRRIPTKSMKQKRSE

Homology

[Close]

BLAST of ClCG04G001030.1 vs. Swiss-Prot
Match: TI214_COFAR (Protein TIC 214 OS=Coffea arabica GN=TIC214 PE=3 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 1.1e-16
Identity = 45/54 (83.33%), Postives = 46/54 (85.19%), Query Frame = 1


Query: 98  QIINSVVVVGLYYGFLTTFSIGSSYLFLLRARVMEEGAEKKVSATTGKILSPIV 152
           +IINSVVVVGLYYGFLTTFSIG SYLFLLRARVMEEG EKKVSATTG I   ++
Sbjct: 17  KIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVMEEGTEKKVSATTGFITGQLM 70

HSP 2 Score: 41.6 bits (96), Expect = 1.2e-02
Identity = 24/47 (51.06%), Postives = 30/47 (63.83%), Query Frame = 1


Query: 144 GKILSPIVTKKLKETSEMEEKGESEEEIEGVIEENTSPSLSFWKKRR 191
           G+I SPI+TKKLKETS+ EE  ESEE  EG +E  T+  +   K+ +
Sbjct: 235 GRIPSPILTKKLKETSKTEEGVESEE--EGDVEIETTSEMKGTKQEQ 279

[Close]

BLAST of ClCG04G001030.1 vs. Swiss-Prot
Match: TI214_BUXMI (Protein TIC 214 OS=Buxus microphylla GN=TIC214 PE=3 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 1.1e-16
Identity = 45/54 (83.33%), Postives = 46/54 (85.19%), Query Frame = 1


Query: 98  QIINSVVVVGLYYGFLTTFSIGSSYLFLLRARVMEEGAEKKVSATTGKILSPIV 152
           +IINSVVVVGLYYGFLTTFSIG SYLFLLRARVMEEG EKKVSATTG I   ++
Sbjct: 17  KIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVMEEGTEKKVSATTGFITGQLM 70

HSP 2 Score: 45.1 bits (105), Expect = 1.1e-03
Identity = 22/33 (66.67%), Postives = 26/33 (78.79%), Query Frame = 1


Query: 144 GKILSPIVTKKLKETSEMEEKGESEEEIEGVIE 177
           G++ +PIVTKKLKETS+ EE+GESEEE +  IE
Sbjct: 235 GRMPAPIVTKKLKETSKTEERGESEEERDVEIE 267

[Close]

BLAST of ClCG04G001030.1 vs. Swiss-Prot
Match: TI214_NANDO (Protein TIC 214 OS=Nandina domestica GN=TIC214 PE=3 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 3.3e-16
Identity = 44/54 (81.48%), Postives = 46/54 (85.19%), Query Frame = 1


Query: 98  QIINSVVVVGLYYGFLTTFSIGSSYLFLLRARVMEEGAEKKVSATTGKILSPIV 152
           +IINSVVVVGLYYGFLTTFSIG SYLFLLRARVMEEG EK+VSATTG I   ++
Sbjct: 17  KIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVMEEGTEKEVSATTGFITGQLM 70

HSP 2 Score: 45.1 bits (105), Expect = 1.1e-03
Identity = 23/33 (69.70%), Postives = 25/33 (75.76%), Query Frame = 1


Query: 144 GKILSPIVTKKLKETSEMEEKGESEEEIEGVIE 177
           G+I SPIVTKKLKETS+ EE+ ESEEE +  IE
Sbjct: 231 GRIPSPIVTKKLKETSKTEEREESEEETDVEIE 263

[Close]

BLAST of ClCG04G001030.1 vs. Swiss-Prot
Match: TI214_CALFG (Protein TIC 214 OS=Calycanthus floridus var. glaucus GN=TIC214 PE=3 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 3.3e-16
Identity = 44/54 (81.48%), Postives = 46/54 (85.19%), Query Frame = 1


Query: 98  QIINSVVVVGLYYGFLTTFSIGSSYLFLLRARVMEEGAEKKVSATTGKILSPIV 152
           +IINSVVVVGLYYGFLTTFSIG SYLFLLRARVMEEG EK+VSATTG I   ++
Sbjct: 17  KIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVMEEGTEKEVSATTGFITGQLM 70

HSP 2 Score: 41.2 bits (95), Expect = 1.6e-02
Identity = 21/34 (61.76%), Postives = 24/34 (70.59%), Query Frame = 1


Query: 144 GKILSPIVTKKLKETSEMEEKGESEEEIEGVIEE 178
           G+I SPI+TKKLKETSE EE  E+E+E    IE+
Sbjct: 235 GRIPSPILTKKLKETSETEEGEENEDETNVEIEK 268

[Close]

BLAST of ClCG04G001030.1 vs. Swiss-Prot
Match: TI214_PLAOC (Protein TIC 214 OS=Platanus occidentalis GN=TIC214 PE=3 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 3.3e-16
Identity = 44/54 (81.48%), Postives = 46/54 (85.19%), Query Frame = 1


Query: 98  QIINSVVVVGLYYGFLTTFSIGSSYLFLLRARVMEEGAEKKVSATTGKILSPIV 152
           +IINSVVVVGLYYGFLTTFSIG SYLFLLRARVMEEG EK+VSATTG I   ++
Sbjct: 17  KIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVMEEGTEKEVSATTGFITGQLM 70

HSP 2 Score: 40.8 bits (94), Expect = 2.1e-02
Identity = 24/57 (42.11%), Postives = 31/57 (54.39%), Query Frame = 1


Query: 144 GKILSPIVTKKLKETSEMEEKGESEEEI-----------------EGVIEENTSPSL 184
           G++ S +VTKK+KETS+M++ G+SEEE                  EG  EE+ SPSL
Sbjct: 244 GRMPSTLVTKKMKETSKMKQMGQSEEETDVEIETTSETKETKEEQEGSTEEDPSPSL 300

[Close]

BLAST of ClCG04G001030.1 vs. TrEMBL
Match: A0A0S2IGL0_CUCPE (Ycf1 OS=Cucurbita pepo var. ozarkana GN=ycf1 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 1.2e-14
Identity = 45/54 (83.33%), Postives = 48/54 (88.89%), Query Frame = 1


Query: 98  QIINSVVVVGLYYGFLTTFSIGSSYLFLLRARVMEEGAEKKVSATTGKILSPIV 152
           +IINSVVVVGLYYGFLTTFSIG SYLFLLRARVMEEG EKKVSATTG I   ++
Sbjct: 17  KIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVMEEGTEKKVSATTGFITGQLM 70

[Close]

BLAST of ClCG04G001030.1 vs. TrEMBL
Match: A0A0S2IGL0_CUCPE (Ycf1 OS=Cucurbita pepo var. ozarkana GN=ycf1 PE=4 SV=1)

HSP 1 Score: 40.0 bits (92), Expect = 3.9e+00
Identity = 25/51 (49.02%), Postives = 34/51 (66.67%), Query Frame = 1


Query: 144 GKILSPIVTKKLKETSEMEEKGESEEEIEGVIEENTSPSLSFWKKRRIPTK 195
           G+I SPI+TKKLKET        +++E EG  EE+TSPSL F +++  P K
Sbjct: 229 GRIPSPILTKKLKETE------GTKQEQEGSTEEDTSPSL-FSEEKEDPDK 272

HSP 2 Score: 88.2 bits (217), Expect = 1.2e-14
Identity = 45/54 (83.33%), Postives = 48/54 (88.89%), Query Frame = 1


Query: 98  QIINSVVVVGLYYGFLTTFSIGSSYLFLLRARVMEEGAEKKVSATTGKILSPIV 152
           +IINSVVVVGLYYGFLTTFSIG SYLFLLRARVMEEG EKKVSATTG I   ++
Sbjct: 17  KIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVMEEGTEKKVSATTGFITGQLM 70

[Close]

BLAST of ClCG04G001030.1 vs. TrEMBL
Match: A0A166GJJ8_COFCA (Ycf1 OS=Coffea canephora GN=ycf1 PE=4 SV=1)

HSP 1 Score: 41.6 bits (96), Expect = 1.3e+00
Identity = 24/47 (51.06%), Postives = 32/47 (68.09%), Query Frame = 1


Query: 144 GKILSPIVTKKLKETSEMEEKGESEEEIEGVIEENTSPSLSFWKKRR 191
           G+I SPI+TKKLKETS+ EE  ESEE  EG +E  T+  +   K+ +
Sbjct: 235 GRIPSPILTKKLKETSKTEEGVESEE--EGDVEIETTSEMKGTKQEQ 279

HSP 2 Score: 88.2 bits (217), Expect = 1.2e-14
Identity = 45/54 (83.33%), Postives = 48/54 (88.89%), Query Frame = 1


Query: 98  QIINSVVVVGLYYGFLTTFSIGSSYLFLLRARVMEEGAEKKVSATTGKILSPIV 152
           +IINSVVVVGLYYGFLTTFSIG SYLFLLRARVMEEG EKKVSATTG I   ++
Sbjct: 17  KIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVMEEGTEKKVSATTGFITGQLM 70

[Close]

BLAST of ClCG04G001030.1 vs. TrEMBL
Match: A0A0S2IH24_CUCPE (Uncharacterized protein OS=Cucurbita pepo var. texana PE=4 SV=1)

HSP 1 Score: 40.0 bits (92), Expect = 3.9e+00
Identity = 25/51 (49.02%), Postives = 34/51 (66.67%), Query Frame = 1


Query: 144 GKILSPIVTKKLKETSEMEEKGESEEEIEGVIEENTSPSLSFWKKRRIPTK 195
           G+I SPI+TKKLKET        +++E EG  EE+TSPSL F +++  P K
Sbjct: 229 GRIPSPILTKKLKETE------GTKQEQEGSTEEDTSPSL-FSEEKEDPDK 272

HSP 2 Score: 88.2 bits (217), Expect = 1.2e-14
Identity = 45/54 (83.33%), Postives = 48/54 (88.89%), Query Frame = 1


Query: 98  QIINSVVVVGLYYGFLTTFSIGSSYLFLLRARVMEEGAEKKVSATTGKILSPIV 152
           +IINSVVVVGLYYGFLTTFSIG SYLFLLRARVMEEG EKKVSATTG I   ++
Sbjct: 17  KIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVMEEGTEKKVSATTGFITGQLM 70

[Close]

BLAST of ClCG04G001030.1 vs. TrEMBL
Match: A0A0S2IFT8_9ROSI (Uncharacterized protein OS=Cucurbita okeechobeensis PE=4 SV=1)

HSP 1 Score: 40.0 bits (92), Expect = 3.9e+00
Identity = 25/51 (49.02%), Postives = 34/51 (66.67%), Query Frame = 1


Query: 144 GKILSPIVTKKLKETSEMEEKGESEEEIEGVIEENTSPSLSFWKKRRIPTK 195
           G+I SPI+TKKLKET        +++E EG  EE+TSPSL F +++  P K
Sbjct: 229 GRIPSPILTKKLKETE------GTKQEQEGSTEEDTSPSL-FSEEKEDPDK 272

HSP 2 Score: 88.2 bits (217), Expect = 1.2e-14
Identity = 45/54 (83.33%), Postives = 48/54 (88.89%), Query Frame = 1


Query: 98  QIINSVVVVGLYYGFLTTFSIGSSYLFLLRARVMEEGAEKKVSATTGKILSPIV 152
           +IINSVVVVGLYYGFLTTFSIG SYLFLLRARVMEEG EKKVSATTG I   ++
Sbjct: 17  KIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVMEEGTEKKVSATTGFITGQLM 70

[Close]

BLAST of ClCG04G001030.1 vs. TAIR10
Match: ATCG01130.1 (ATCG01130.1 Ycf1 protein)

HSP 1 Score: 82.8 bits (203), Expect = 2.7e-16
Identity = 45/57 (78.95%), Postives = 46/57 (80.70%), Query Frame = 1


Query: 98  QIINSVVVVGLYYGFLTTFSIGSSYLFLLRARVM---EEGAEKKVSATTGKILSPIV 152
           +IINSVVVVGLYYGFLTTFSIG SYLFLLRARVM   EEG EKKVSATTG I   ++
Sbjct: 18  KIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVMDEGEEGTEKKVSATTGFIAGQLM 74

HSP 2 Score: 31.6 bits (70), Expect = 7.0e-01
Identity = 20/40 (50.00%), Postives = 23/40 (57.50%), Query Frame = 1


Query: 144 GKILSPIVTKKLKETSEMEEKGESEEEIEGVIEENTSPSL 184
           G+I SPI TKKLK TS   E G ++++ E   EE   PSL
Sbjct: 241 GRIPSPIFTKKLKGTS---ETGGTKQDQEVSTEEAPFPSL 277

[Close]

BLAST of ClCG04G001030.1 vs. TAIR10
Match: ATCG01000.1 (ATCG01000.1 Ycf1 protein)

HSP 1 Score: 82.8 bits (203), Expect = 2.7e-16
Identity = 45/57 (78.95%), Postives = 46/57 (80.70%), Query Frame = 1


Query: 98  QIINSVVVVGLYYGFLTTFSIGSSYLFLLRARVM---EEGAEKKVSATTGKILSPIV 152
           +IINSVVVVGLYYGFLTTFSIG SYLFLLRARVM   EEG EKKVSATTG I   ++
Sbjct: 18  KIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVMDEGEEGTEKKVSATTGFIAGQLM 74

HSP 2 Score: 31.6 bits (70), Expect = 7.0e-01
Identity = 20/40 (50.00%), Postives = 23/40 (57.50%), Query Frame = 1


Query: 144 GKILSPIVTKKLKETSEMEEKGESEEEIEGVIEENTSPSL 184
           G+I SPI TKKLK TS   E G ++++ E   EE   PSL
Sbjct: 241 GRIPSPIFTKKLKGTS---ETGGTKQDQEVSTEEAPFPSL 277

[Close]

BLAST of ClCG04G001030.1 vs. TAIR10
Match: ATMG00370.1 (ATMG00370.1 Ycf1 protein)

HSP 1 Score: 82.8 bits (203), Expect = 2.7e-16
Identity = 45/57 (78.95%), Postives = 46/57 (80.70%), Query Frame = 1


Query: 98  QIINSVVVVGLYYGFLTTFSIGSSYLFLLRARVM---EEGAEKKVSATTGKILSPIV 152
           +IINSVVVVGLYYGFLTTFSIG SYLFLLRARVM   EEG EKKVSATTG I   ++
Sbjct: 17  KIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVMDEGEEGTEKKVSATTGFIAGQLM 73

[Close]

BLAST of ClCG04G001030.1 vs. TAIR10
Match: AT2G07739.1 (AT2G07739.1 Ycf1 protein)

HSP 1 Score: 80.5 bits (197), Expect = 1.3e-15
Identity = 44/57 (77.19%), Postives = 45/57 (78.95%), Query Frame = 1


Query: 98  QIINSVVVVGLYYGFLTTFSIGSSYLFLLRARVM---EEGAEKKVSATTGKILSPIV 152
           +IINSVVVVGLYYGFLTTFSIG  YLFLLRARVM   EEG EKKVSATTG I   ++
Sbjct: 17  KIINSVVVVGLYYGFLTTFSIGPFYLFLLRARVMDEGEEGTEKKVSATTGFIAGQLM 73

[Close]

BLAST of ClCG04G001030.1 vs. NCBI nr
Match: gi|149390599|ref|YP_001294243.1| (hypothetical chloroplast RF1 [Buxus microphylla])

HSP 1 Score: 88.2 bits (217), Expect = 1.8e-14
Identity = 45/54 (83.33%), Postives = 48/54 (88.89%), Query Frame = 1


Query: 98  QIINSVVVVGLYYGFLTTFSIGSSYLFLLRARVMEEGAEKKVSATTGKILSPIV 152
           +IINSVVVVGLYYGFLTTFSIG SYLFLLRARVMEEG EKKVSATTG I   ++
Sbjct: 17  KIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVMEEGTEKKVSATTGFITGQLM 70

[Close]

BLAST of ClCG04G001030.1 vs. NCBI nr
Match: gi|149390599|ref|YP_001294243.1| (hypothetical chloroplast RF1 [Buxus microphylla])

HSP 1 Score: 45.1 bits (105), Expect = 1.7e-01
Identity = 22/33 (66.67%), Postives = 28/33 (84.85%), Query Frame = 1


Query: 144 GKILSPIVTKKLKETSEMEEKGESEEEIEGVIE 177
           G++ +PIVTKKLKETS+ EE+GESEEE +  IE
Sbjct: 235 GRMPAPIVTKKLKETSKTEERGESEEERDVEIE 267

HSP 2 Score: 88.2 bits (217), Expect = 1.8e-14
Identity = 45/54 (83.33%), Postives = 48/54 (88.89%), Query Frame = 1


Query: 98  QIINSVVVVGLYYGFLTTFSIGSSYLFLLRARVMEEGAEKKVSATTGKILSPIV 152
           +IINSVVVVGLYYGFLTTFSIG SYLFLLRARVMEEG EKKVSATTG I   ++
Sbjct: 17  KIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVMEEGTEKKVSATTGFITGQLM 70

[Close]

BLAST of ClCG04G001030.1 vs. NCBI nr
Match: gi|116617166|ref|YP_817540.1| (hypothetical chloroplast RF1 [Coffea arabica])

HSP 1 Score: 41.6 bits (96), Expect = 1.9e+00
Identity = 24/47 (51.06%), Postives = 32/47 (68.09%), Query Frame = 1


Query: 144 GKILSPIVTKKLKETSEMEEKGESEEEIEGVIEENTSPSLSFWKKRR 191
           G+I SPI+TKKLKETS+ EE  ESEE  EG +E  T+  +   K+ +
Sbjct: 235 GRIPSPILTKKLKETSKTEEGVESEE--EGDVEIETTSEMKGTKQEQ 279

HSP 2 Score: 88.2 bits (217), Expect = 1.8e-14
Identity = 45/54 (83.33%), Postives = 48/54 (88.89%), Query Frame = 1


Query: 98  QIINSVVVVGLYYGFLTTFSIGSSYLFLLRARVMEEGAEKKVSATTGKILSPIV 152
           +IINSVVVVGLYYGFLTTFSIG SYLFLLRARVMEEG EKKVSATTG I   ++
Sbjct: 17  KIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVMEEGTEKKVSATTGFITGQLM 70

[Close]

BLAST of ClCG04G001030.1 vs. NCBI nr
Match: gi|290489064|gb|ADD30916.1| (putative RF1 protein (chloroplast) [Ficus sp. Moore 315])

HSP 1 Score: 42.4 bits (98), Expect = 1.1e+00
Identity = 27/56 (48.21%), Postives = 36/56 (64.29%), Query Frame = 1


Query: 144 GKILSPIVTKKLKETSEMEEKGESE-----EEIEGVIEENTSPSLSFWKKRRIPTK 195
           G+I SPI+TKKLKET E + +  SE     +E EG  EE+ SPSL F +++  P K
Sbjct: 229 GRIPSPILTKKLKETEERDVEKTSETKGTKQEQEGSTEEDPSPSL-FSEEKEDPEK 283

HSP 2 Score: 88.2 bits (217), Expect = 1.8e-14
Identity = 45/54 (83.33%), Postives = 48/54 (88.89%), Query Frame = 1


Query: 98  QIINSVVVVGLYYGFLTTFSIGSSYLFLLRARVMEEGAEKKVSATTGKILSPIV 152
           +IINSVVVVGLYYGFLTTFSIG SYLFLLRARVMEEG EKKVSATTG I   ++
Sbjct: 17  KIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVMEEGTEKKVSATTGFITGQLM 70

[Close]

BLAST of ClCG04G001030.1 vs. NCBI nr
Match: gi|511348508|ref|YP_008081412.1| (hypothetical chloroplast RF1 (chloroplast) [Tetracentron sinense])

HSP 1 Score: 50.8 bits (120), Expect = 3.2e-03
Identity = 31/57 (54.39%), Postives = 34/57 (59.65%), Query Frame = 1


Query: 144 GKILSPIVTKKLKETSEMEEKGESEEEI-----------------EGVIEENTSPSL 184
           G+I SPIVTKKLKETSE EE+GESEEE                  EG  EE+ SPSL
Sbjct: 235 GRIPSPIVTKKLKETSETEERGESEEETDVEIETTSETKGTKQEQEGSTEEDPSPSL 291

HSP 2 Score: 88.2 bits (217), Expect = 1.8e-14
Identity = 45/54 (83.33%), Postives = 48/54 (88.89%), Query Frame = 1


Query: 98  QIINSVVVVGLYYGFLTTFSIGSSYLFLLRARVMEEGAEKKVSATTGKILSPIV 152
           +IINSVVVVGLYYGFLTTFSIG SYLFLLRARVMEEG EKKVSATTG I   ++
Sbjct: 17  KIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVMEEGTEKKVSATTGFITGQLM 70

The following BLAST results are available for this feature:

BLAST of ClCG04G001030.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TI214_COFAR	1.1e-16	83.33	Protein TIC 214 OS=Coffea arabica GN=TIC214 PE=3 SV=1	[more]
TI214_BUXMI	1.1e-16	83.33	Protein TIC 214 OS=Buxus microphylla GN=TIC214 PE=3 SV=1	[more]
TI214_NANDO	3.3e-16	81.48	Protein TIC 214 OS=Nandina domestica GN=TIC214 PE=3 SV=1	[more]
TI214_CALFG	3.3e-16	81.48	Protein TIC 214 OS=Calycanthus floridus var. glaucus GN=TIC214 PE=3 SV=1	[more]
TI214_PLAOC	3.3e-16	81.48	Protein TIC 214 OS=Platanus occidentalis GN=TIC214 PE=3 SV=1	[more]

BLAST of ClCG04G001030.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0S2IGL0_CUCPE	1.2e-14	83.33	Ycf1 OS=Cucurbita pepo var. ozarkana GN=ycf1 PE=4 SV=1	[more]
A0A0S2IGL0_CUCPE	3.9e+00	49.02	Ycf1 OS=Cucurbita pepo var. ozarkana GN=ycf1 PE=4 SV=1	[more]
A0A166GJJ8_COFCA	1.3e+00	51.06	Ycf1 OS=Coffea canephora GN=ycf1 PE=4 SV=1	[more]
A0A0S2IH24_CUCPE	3.9e+00	49.02	Uncharacterized protein OS=Cucurbita pepo var. texana PE=4 SV=1	[more]
A0A0S2IFT8_9ROSI	3.9e+00	49.02	Uncharacterized protein OS=Cucurbita okeechobeensis PE=4 SV=1	[more]

BLAST of ClCG04G001030.1 vs. TAIR10


Match Name	E-value	Identity	Description
ATCG01130.1	2.7e-16	78.95	ATCG01130.1 Ycf1 protein	[more]
ATCG01000.1	2.7e-16	78.95	ATCG01000.1 Ycf1 protein	[more]
ATMG00370.1	2.7e-16	78.95	ATMG00370.1 Ycf1 protein	[more]
AT2G07739.1	1.3e-15	77.19	Ycf1 protein	[more]

BLAST of ClCG04G001030.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|149390599\|ref\|YP_001294243.1\|	1.8e-14	83.33	hypothetical chloroplast RF1 [Buxus microphylla]	[more]
gi\|149390599\|ref\|YP_001294243.1\|	1.7e-01	66.67	hypothetical chloroplast RF1 [Buxus microphylla]	[more]
gi\|116617166\|ref\|YP_817540.1\|	1.9e+00	51.06	hypothetical chloroplast RF1 [Coffea arabica]	[more]
gi\|290489064\|gb\|ADD30916.1\|	1.1e+00	48.21	putative RF1 protein (chloroplast) [Ficus sp. Moore 315]	[more]
gi\|511348508\|ref\|YP_008081412.1\|	3.2e-03	54.39	hypothetical chloroplast RF1 (chloroplast) [Tetracentron sinense]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR008896	TIC214

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015031	protein transport
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009706	chloroplast inner membrane
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
ClCG04G001030	ClCG04G001030	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
ClCG04G001030.1	ClCG04G001030.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG04G001030.1.cds1	ClCG04G001030.1.cds1	CDS
ClCG04G001030.1.cds2	ClCG04G001030.1.cds2	CDS
ClCG04G001030.1.cds3	ClCG04G001030.1.cds3	CDS
ClCG04G001030.1.cds4	ClCG04G001030.1.cds4	CDS
ClCG04G001030.1.cds5	ClCG04G001030.1.cds5	CDS

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008896	Protein TIC214	PFAM	PF05758	Ycf1	coord: 102..146 score: 1.0
None	No IPR available	PANTHER	PTHR33163	FAMILY NOT NAMED	coord: 99..144 score: 1.5