ClCG04G001030 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG04G001030
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Ycf1
Location	CG_Chr04 : 3259491 .. 3261701 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTCGATATTCTGGTGTCCTAGGCGTAGAGGAACCACACCAATCCATCCTGAACTTAGTGGTTAAACTCTATTACGGTAACGATACTGTAGAGGAGGTCCTATGGAAAAATAACTCGACACCAGGATGATAAAAAGTTGAACACCTCTAATTCTTATTACTTTTCAATATTCAATATCAATATGGAAAAAAATGAAAAATGAAAAGGTCGTCTTATTCAAAACCCCTTCTCTCCCACTTTTCTCTCTCACTTCACACCTTGAAACGCATCGTTCTTATAGAGAGAGAGTCGCTTTTACATCTTAACTCAAAATATAGAGAGAGAGTCGCTTTTACATCTTAACTCAAAAAGGGAAGGATCTTCTCTCTAGGGGTAGGAAAATTATGATCTAGATAGCGAACCCAAAGCTATCGAACTTGGGTGTGGGTCTTTTGTCAAAATGGAATGGCCTTATCTTTTGATTTTTTTCTTTTTCGTTAATGGGTTAAGGGAGGGGGTTATGTTTTAAATTAAATATAGTATACCCAACTCGAATCAACATATTTTTTTGTTTAACGCCCCTAATTCTTCCTCAGCCAGGCTCGAGCAGAATAGCAGAGCAAGTACAAGTATTAGTAGAATAGCAAAAATGTGTTCCTCGTCATTAATATGTTTGCACGCTGTACTTGTGACCTATCGGGAGAATCGGATGACTGTATCAAAGATGCACTTGCTAGTACTAGTATATCTGAGAATTCTTAATTGACCAATTGTAAATAGATCCAGACTATGGAACAAAGGATTATCCTGGACCTACACCGAGGTATTGATGGTGATTCTCAAGTATCGCATAACAGAACTTGATACGATGAGATAGAATGCAATAGAAACAAAGACACAGGGAACGAGTTACCTACACTTAACGGTCAAAGTGAACCCTTTCATTTTGAATTCTTTAATTCAGAATGAATCAAATCTCCCCAAGTAGGATTCGAAGCTACGACCAATTGGTTAATAGCCGACTGCTCTACCACTGAGCTACTAAGGAACAACGATAAATTAGGTCTCAGAGAATTCAATTCTCGTTCTCAACCCATGACTAATATGAGCTTGAGGTTTCCTTTGTAACTCCCGAAACTTCTTCATAGTGGCTTCATTCCATGCCTCATTTCATAAAGAACCTCAAAGTGGCTCTATTTCATTATATTCCATCCATATGCCAATTCCATTCATTTAATATCCATGTGGTGTCATTGAGATAAGAGATGTCGTTTCTAGTCTATTTGTTTCTATTTCTATATATATGGAAAGTTAAAAAATCATCATATAATAATCCAGAAAATACAATAGAAAAGAAAAAGGGAGGTTTGTGATAATTTTAAAATCTTTTATACTAGGTAATCTAGTATCCTTATGCATGAAGATAATCAATTCGGTTGTTGTGGTCGGACTCTATTATGGATTTCTAACCACATTCTCCATAGGGTCCTCTTATCTCTTCCTTCTCCGAGCTCGGGTCATGGAAGAAGGAGCCGAGAAGAAAGTATCAGCAACAACAGGTTTTATTACACAACTCATGATGTTCATATTCATCTATTATGCGTCTCTACATCTAGCATTGGGTAGACCTCATACAATAACTGTCCTATCTCTACCATATCTTTTGTTTCATTTCTTCTAAAACAATCAGAAACATTTTTTTTTACCATGGATCTACTACCAAAAACTCAATGCGTAATCTTAGCATTCAATGTGTATTCCTAAATAATCTTATTTTTCAATTATTCAACAATTTCATTTAACCAAGTTTAATGTTAGTCAGATTAGTCAACATTTCTATATTTCGATGCAACAACAAGATGTTATTTGTAACATGTAGTTTCATTGGTTGGTTAATTGGTCACATTTTATTCATGAAATGAGTTGGATTGATATTAGTTTGGATACAGCAAAATAATTTTATAGAGAAAGTACCTTGTGTCAGAATTGAGAAATTCTATGGCTCGAATCTTTAGTATTCTCTTATTTATTACCTGTGTCTACTATTTAGGCAAAATACTGTCACCCATTGTTACTAAGAAACTGAAAGAAACCTCAGAAATGGAGGAAAAGGGGGAAAGCGAGGAAGAAATAGAGGGAGTCATTGAAGAAAATACTTCTCCTTCCCTTTCTTTTTGGAAGAAAAGGAGGATCCCGACAAAATCGATGAAACAGAAGAGATCTGAGTGA

mRNA sequence

ATGGTTCGATATTCTGGTGTCCTAGGCGTAGAGGAACCACACCAATCCATCCTGAACTTAGTGGTTAAACTCTATTACGGTAACGATACTGTAGAGGAGAATAGCAGAGCAAGTACAAGTATTAGTAGAATAGCAAAAATGTGTTCCTCGTCATTAATATGTTTGCACGCTGTACTTGTGACCTATCGGGAGAATCGGATGACTGTATCAAAGATGCACTTGCTAGTACTAATCCAGACTATGGAACAAAGGATTATCCTGGACCTACACCGAGGTATTGATGGTGATTCTCAAATAATCAATTCGGTTGTTGTGGTCGGACTCTATTATGGATTTCTAACCACATTCTCCATAGGGTCCTCTTATCTCTTCCTTCTCCGAGCTCGGGTCATGGAAGAAGGAGCCGAGAAGAAAGTATCAGCAACAACAGGCAAAATACTGTCACCCATTGTTACTAAGAAACTGAAAGAAACCTCAGAAATGGAGGAAAAGGGGGAAAGCGAGGAAGAAATAGAGGGAGTCATTGAAGAAAATACTTCTCCTTCCCTTTCTTTTTGGAAGAAAAGGAGGATCCCGACAAAATCGATGAAACAGAAGAGATCTGAGTGA

Coding sequence (CDS)

ATGGTTCGATATTCTGGTGTCCTAGGCGTAGAGGAACCACACCAATCCATCCTGAACTTAGTGGTTAAACTCTATTACGGTAACGATACTGTAGAGGAGAATAGCAGAGCAAGTACAAGTATTAGTAGAATAGCAAAAATGTGTTCCTCGTCATTAATATGTTTGCACGCTGTACTTGTGACCTATCGGGAGAATCGGATGACTGTATCAAAGATGCACTTGCTAGTACTAATCCAGACTATGGAACAAAGGATTATCCTGGACCTACACCGAGGTATTGATGGTGATTCTCAAATAATCAATTCGGTTGTTGTGGTCGGACTCTATTATGGATTTCTAACCACATTCTCCATAGGGTCCTCTTATCTCTTCCTTCTCCGAGCTCGGGTCATGGAAGAAGGAGCCGAGAAGAAAGTATCAGCAACAACAGGCAAAATACTGTCACCCATTGTTACTAAGAAACTGAAAGAAACCTCAGAAATGGAGGAAAAGGGGGAAAGCGAGGAAGAAATAGAGGGAGTCATTGAAGAAAATACTTCTCCTTCCCTTTCTTTTTGGAAGAAAAGGAGGATCCCGACAAAATCGATGAAACAGAAGAGATCTGAGTGA

Protein sequence

MVRYSGVLGVEEPHQSILNLVVKLYYGNDTVEENSRASTSISRIAKMCSSSLICLHAVLVTYRENRMTVSKMHLLVLIQTMEQRIILDLHRGIDGDSQIINSVVVVGLYYGFLTTFSIGSSYLFLLRARVMEEGAEKKVSATTGKILSPIVTKKLKETSEMEEKGESEEEIEGVIEENTSPSLSFWKKRRIPTKSMKQKRSE

Homology

[Close]

BLAST of ClCG04G001030 vs. Swiss-Prot
Match: TI214_COFAR (Protein TIC 214 OS=Coffea arabica GN=TIC214 PE=3 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 1.1e-16
Identity = 45/54 (83.33%), Postives = 46/54 (85.19%), Query Frame = 1


Query: 98  QIINSVVVVGLYYGFLTTFSIGSSYLFLLRARVMEEGAEKKVSATTGKILSPIV 152
           +IINSVVVVGLYYGFLTTFSIG SYLFLLRARVMEEG EKKVSATTG I   ++
Sbjct: 17  KIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVMEEGTEKKVSATTGFITGQLM 70

HSP 2 Score: 41.6 bits (96), Expect = 1.2e-02
Identity = 24/47 (51.06%), Postives = 30/47 (63.83%), Query Frame = 1


Query: 144 GKILSPIVTKKLKETSEMEEKGESEEEIEGVIEENTSPSLSFWKKRR 191
           G+I SPI+TKKLKETS+ EE  ESEE  EG +E  T+  +   K+ +
Sbjct: 235 GRIPSPILTKKLKETSKTEEGVESEE--EGDVEIETTSEMKGTKQEQ 279

[Close]

BLAST of ClCG04G001030 vs. Swiss-Prot
Match: TI214_BUXMI (Protein TIC 214 OS=Buxus microphylla GN=TIC214 PE=3 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 1.1e-16
Identity = 45/54 (83.33%), Postives = 46/54 (85.19%), Query Frame = 1


Query: 98  QIINSVVVVGLYYGFLTTFSIGSSYLFLLRARVMEEGAEKKVSATTGKILSPIV 152
           +IINSVVVVGLYYGFLTTFSIG SYLFLLRARVMEEG EKKVSATTG I   ++
Sbjct: 17  KIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVMEEGTEKKVSATTGFITGQLM 70

HSP 2 Score: 45.1 bits (105), Expect = 1.1e-03
Identity = 22/33 (66.67%), Postives = 26/33 (78.79%), Query Frame = 1


Query: 144 GKILSPIVTKKLKETSEMEEKGESEEEIEGVIE 177
           G++ +PIVTKKLKETS+ EE+GESEEE +  IE
Sbjct: 235 GRMPAPIVTKKLKETSKTEERGESEEERDVEIE 267

[Close]

BLAST of ClCG04G001030 vs. Swiss-Prot
Match: TI214_NANDO (Protein TIC 214 OS=Nandina domestica GN=TIC214 PE=3 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 3.3e-16
Identity = 44/54 (81.48%), Postives = 46/54 (85.19%), Query Frame = 1


Query: 98  QIINSVVVVGLYYGFLTTFSIGSSYLFLLRARVMEEGAEKKVSATTGKILSPIV 152
           +IINSVVVVGLYYGFLTTFSIG SYLFLLRARVMEEG EK+VSATTG I   ++
Sbjct: 17  KIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVMEEGTEKEVSATTGFITGQLM 70

HSP 2 Score: 45.1 bits (105), Expect = 1.1e-03
Identity = 23/33 (69.70%), Postives = 25/33 (75.76%), Query Frame = 1


Query: 144 GKILSPIVTKKLKETSEMEEKGESEEEIEGVIE 177
           G+I SPIVTKKLKETS+ EE+ ESEEE +  IE
Sbjct: 231 GRIPSPIVTKKLKETSKTEEREESEEETDVEIE 263

[Close]

BLAST of ClCG04G001030 vs. Swiss-Prot
Match: TI214_CALFG (Protein TIC 214 OS=Calycanthus floridus var. glaucus GN=TIC214 PE=3 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 3.3e-16
Identity = 44/54 (81.48%), Postives = 46/54 (85.19%), Query Frame = 1


Query: 98  QIINSVVVVGLYYGFLTTFSIGSSYLFLLRARVMEEGAEKKVSATTGKILSPIV 152
           +IINSVVVVGLYYGFLTTFSIG SYLFLLRARVMEEG EK+VSATTG I   ++
Sbjct: 17  KIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVMEEGTEKEVSATTGFITGQLM 70

HSP 2 Score: 41.2 bits (95), Expect = 1.6e-02
Identity = 21/34 (61.76%), Postives = 24/34 (70.59%), Query Frame = 1


Query: 144 GKILSPIVTKKLKETSEMEEKGESEEEIEGVIEE 178
           G+I SPI+TKKLKETSE EE  E+E+E    IE+
Sbjct: 235 GRIPSPILTKKLKETSETEEGEENEDETNVEIEK 268

[Close]

BLAST of ClCG04G001030 vs. Swiss-Prot
Match: TI214_PLAOC (Protein TIC 214 OS=Platanus occidentalis GN=TIC214 PE=3 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 3.3e-16
Identity = 44/54 (81.48%), Postives = 46/54 (85.19%), Query Frame = 1


Query: 98  QIINSVVVVGLYYGFLTTFSIGSSYLFLLRARVMEEGAEKKVSATTGKILSPIV 152
           +IINSVVVVGLYYGFLTTFSIG SYLFLLRARVMEEG EK+VSATTG I   ++
Sbjct: 17  KIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVMEEGTEKEVSATTGFITGQLM 70

HSP 2 Score: 40.8 bits (94), Expect = 2.1e-02
Identity = 24/57 (42.11%), Postives = 31/57 (54.39%), Query Frame = 1


Query: 144 GKILSPIVTKKLKETSEMEEKGESEEEI-----------------EGVIEENTSPSL 184
           G++ S +VTKK+KETS+M++ G+SEEE                  EG  EE+ SPSL
Sbjct: 244 GRMPSTLVTKKMKETSKMKQMGQSEEETDVEIETTSETKETKEEQEGSTEEDPSPSL 300

[Close]

BLAST of ClCG04G001030 vs. TrEMBL
Match: A0A0S2IGL0_CUCPE (Ycf1 OS=Cucurbita pepo var. ozarkana GN=ycf1 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 1.2e-14
Identity = 45/54 (83.33%), Postives = 48/54 (88.89%), Query Frame = 1


Query: 98  QIINSVVVVGLYYGFLTTFSIGSSYLFLLRARVMEEGAEKKVSATTGKILSPIV 152
           +IINSVVVVGLYYGFLTTFSIG SYLFLLRARVMEEG EKKVSATTG I   ++
Sbjct: 17  KIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVMEEGTEKKVSATTGFITGQLM 70

[Close]

BLAST of ClCG04G001030 vs. TrEMBL
Match: A0A0S2IGL0_CUCPE (Ycf1 OS=Cucurbita pepo var. ozarkana GN=ycf1 PE=4 SV=1)

HSP 1 Score: 40.0 bits (92), Expect = 3.9e+00
Identity = 25/51 (49.02%), Postives = 34/51 (66.67%), Query Frame = 1


Query: 144 GKILSPIVTKKLKETSEMEEKGESEEEIEGVIEENTSPSLSFWKKRRIPTK 195
           G+I SPI+TKKLKET        +++E EG  EE+TSPSL F +++  P K
Sbjct: 229 GRIPSPILTKKLKETE------GTKQEQEGSTEEDTSPSL-FSEEKEDPDK 272

HSP 2 Score: 88.2 bits (217), Expect = 1.2e-14
Identity = 45/54 (83.33%), Postives = 48/54 (88.89%), Query Frame = 1


Query: 98  QIINSVVVVGLYYGFLTTFSIGSSYLFLLRARVMEEGAEKKVSATTGKILSPIV 152
           +IINSVVVVGLYYGFLTTFSIG SYLFLLRARVMEEG EKKVSATTG I   ++
Sbjct: 17  KIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVMEEGTEKKVSATTGFITGQLM 70

[Close]

BLAST of ClCG04G001030 vs. TrEMBL
Match: A0A166GJJ8_COFCA (Ycf1 OS=Coffea canephora GN=ycf1 PE=4 SV=1)

HSP 1 Score: 41.6 bits (96), Expect = 1.3e+00
Identity = 24/47 (51.06%), Postives = 32/47 (68.09%), Query Frame = 1


Query: 144 GKILSPIVTKKLKETSEMEEKGESEEEIEGVIEENTSPSLSFWKKRR 191
           G+I SPI+TKKLKETS+ EE  ESEE  EG +E  T+  +   K+ +
Sbjct: 235 GRIPSPILTKKLKETSKTEEGVESEE--EGDVEIETTSEMKGTKQEQ 279

HSP 2 Score: 88.2 bits (217), Expect = 1.2e-14
Identity = 45/54 (83.33%), Postives = 48/54 (88.89%), Query Frame = 1


Query: 98  QIINSVVVVGLYYGFLTTFSIGSSYLFLLRARVMEEGAEKKVSATTGKILSPIV 152
           +IINSVVVVGLYYGFLTTFSIG SYLFLLRARVMEEG EKKVSATTG I   ++
Sbjct: 17  KIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVMEEGTEKKVSATTGFITGQLM 70

[Close]

BLAST of ClCG04G001030 vs. TrEMBL
Match: A0A0S2IH24_CUCPE (Uncharacterized protein OS=Cucurbita pepo var. texana PE=4 SV=1)

HSP 1 Score: 40.0 bits (92), Expect = 3.9e+00
Identity = 25/51 (49.02%), Postives = 34/51 (66.67%), Query Frame = 1


Query: 144 GKILSPIVTKKLKETSEMEEKGESEEEIEGVIEENTSPSLSFWKKRRIPTK 195
           G+I SPI+TKKLKET        +++E EG  EE+TSPSL F +++  P K
Sbjct: 229 GRIPSPILTKKLKETE------GTKQEQEGSTEEDTSPSL-FSEEKEDPDK 272

HSP 2 Score: 88.2 bits (217), Expect = 1.2e-14
Identity = 45/54 (83.33%), Postives = 48/54 (88.89%), Query Frame = 1


Query: 98  QIINSVVVVGLYYGFLTTFSIGSSYLFLLRARVMEEGAEKKVSATTGKILSPIV 152
           +IINSVVVVGLYYGFLTTFSIG SYLFLLRARVMEEG EKKVSATTG I   ++
Sbjct: 17  KIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVMEEGTEKKVSATTGFITGQLM 70

[Close]

BLAST of ClCG04G001030 vs. TrEMBL
Match: A0A0S2IFT8_9ROSI (Uncharacterized protein OS=Cucurbita okeechobeensis PE=4 SV=1)

HSP 1 Score: 40.0 bits (92), Expect = 3.9e+00
Identity = 25/51 (49.02%), Postives = 34/51 (66.67%), Query Frame = 1


Query: 144 GKILSPIVTKKLKETSEMEEKGESEEEIEGVIEENTSPSLSFWKKRRIPTK 195
           G+I SPI+TKKLKET        +++E EG  EE+TSPSL F +++  P K
Sbjct: 229 GRIPSPILTKKLKETE------GTKQEQEGSTEEDTSPSL-FSEEKEDPDK 272

HSP 2 Score: 88.2 bits (217), Expect = 1.2e-14
Identity = 45/54 (83.33%), Postives = 48/54 (88.89%), Query Frame = 1


Query: 98  QIINSVVVVGLYYGFLTTFSIGSSYLFLLRARVMEEGAEKKVSATTGKILSPIV 152
           +IINSVVVVGLYYGFLTTFSIG SYLFLLRARVMEEG EKKVSATTG I   ++
Sbjct: 17  KIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVMEEGTEKKVSATTGFITGQLM 70

[Close]

BLAST of ClCG04G001030 vs. TAIR10
Match: ATCG01130.1 (ATCG01130.1 Ycf1 protein)

HSP 1 Score: 82.8 bits (203), Expect = 2.7e-16
Identity = 45/57 (78.95%), Postives = 46/57 (80.70%), Query Frame = 1


Query: 98  QIINSVVVVGLYYGFLTTFSIGSSYLFLLRARVM---EEGAEKKVSATTGKILSPIV 152
           +IINSVVVVGLYYGFLTTFSIG SYLFLLRARVM   EEG EKKVSATTG I   ++
Sbjct: 18  KIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVMDEGEEGTEKKVSATTGFIAGQLM 74

HSP 2 Score: 31.6 bits (70), Expect = 7.0e-01
Identity = 20/40 (50.00%), Postives = 23/40 (57.50%), Query Frame = 1


Query: 144 GKILSPIVTKKLKETSEMEEKGESEEEIEGVIEENTSPSL 184
           G+I SPI TKKLK TS   E G ++++ E   EE   PSL
Sbjct: 241 GRIPSPIFTKKLKGTS---ETGGTKQDQEVSTEEAPFPSL 277

[Close]

BLAST of ClCG04G001030 vs. TAIR10
Match: ATCG01000.1 (ATCG01000.1 Ycf1 protein)

HSP 1 Score: 82.8 bits (203), Expect = 2.7e-16
Identity = 45/57 (78.95%), Postives = 46/57 (80.70%), Query Frame = 1


Query: 98  QIINSVVVVGLYYGFLTTFSIGSSYLFLLRARVM---EEGAEKKVSATTGKILSPIV 152
           +IINSVVVVGLYYGFLTTFSIG SYLFLLRARVM   EEG EKKVSATTG I   ++
Sbjct: 18  KIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVMDEGEEGTEKKVSATTGFIAGQLM 74

HSP 2 Score: 31.6 bits (70), Expect = 7.0e-01
Identity = 20/40 (50.00%), Postives = 23/40 (57.50%), Query Frame = 1


Query: 144 GKILSPIVTKKLKETSEMEEKGESEEEIEGVIEENTSPSL 184
           G+I SPI TKKLK TS   E G ++++ E   EE   PSL
Sbjct: 241 GRIPSPIFTKKLKGTS---ETGGTKQDQEVSTEEAPFPSL 277

[Close]

BLAST of ClCG04G001030 vs. TAIR10
Match: ATMG00370.1 (ATMG00370.1 Ycf1 protein)

HSP 1 Score: 82.8 bits (203), Expect = 2.7e-16
Identity = 45/57 (78.95%), Postives = 46/57 (80.70%), Query Frame = 1


Query: 98  QIINSVVVVGLYYGFLTTFSIGSSYLFLLRARVM---EEGAEKKVSATTGKILSPIV 152
           +IINSVVVVGLYYGFLTTFSIG SYLFLLRARVM   EEG EKKVSATTG I   ++
Sbjct: 17  KIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVMDEGEEGTEKKVSATTGFIAGQLM 73

[Close]

BLAST of ClCG04G001030 vs. TAIR10
Match: AT2G07739.1 (AT2G07739.1 Ycf1 protein)

HSP 1 Score: 80.5 bits (197), Expect = 1.3e-15
Identity = 44/57 (77.19%), Postives = 45/57 (78.95%), Query Frame = 1


Query: 98  QIINSVVVVGLYYGFLTTFSIGSSYLFLLRARVM---EEGAEKKVSATTGKILSPIV 152
           +IINSVVVVGLYYGFLTTFSIG  YLFLLRARVM   EEG EKKVSATTG I   ++
Sbjct: 17  KIINSVVVVGLYYGFLTTFSIGPFYLFLLRARVMDEGEEGTEKKVSATTGFIAGQLM 73

[Close]

BLAST of ClCG04G001030 vs. NCBI nr
Match: gi|149390599|ref|YP_001294243.1| (hypothetical chloroplast RF1 [Buxus microphylla])

HSP 1 Score: 88.2 bits (217), Expect = 1.8e-14
Identity = 45/54 (83.33%), Postives = 48/54 (88.89%), Query Frame = 1


Query: 98  QIINSVVVVGLYYGFLTTFSIGSSYLFLLRARVMEEGAEKKVSATTGKILSPIV 152
           +IINSVVVVGLYYGFLTTFSIG SYLFLLRARVMEEG EKKVSATTG I   ++
Sbjct: 17  KIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVMEEGTEKKVSATTGFITGQLM 70

[Close]

BLAST of ClCG04G001030 vs. NCBI nr
Match: gi|149390599|ref|YP_001294243.1| (hypothetical chloroplast RF1 [Buxus microphylla])

HSP 1 Score: 45.1 bits (105), Expect = 1.7e-01
Identity = 22/33 (66.67%), Postives = 28/33 (84.85%), Query Frame = 1


Query: 144 GKILSPIVTKKLKETSEMEEKGESEEEIEGVIE 177
           G++ +PIVTKKLKETS+ EE+GESEEE +  IE
Sbjct: 235 GRMPAPIVTKKLKETSKTEERGESEEERDVEIE 267

HSP 2 Score: 88.2 bits (217), Expect = 1.8e-14
Identity = 45/54 (83.33%), Postives = 48/54 (88.89%), Query Frame = 1


Query: 98  QIINSVVVVGLYYGFLTTFSIGSSYLFLLRARVMEEGAEKKVSATTGKILSPIV 152
           +IINSVVVVGLYYGFLTTFSIG SYLFLLRARVMEEG EKKVSATTG I   ++
Sbjct: 17  KIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVMEEGTEKKVSATTGFITGQLM 70

[Close]

BLAST of ClCG04G001030 vs. NCBI nr
Match: gi|116617166|ref|YP_817540.1| (hypothetical chloroplast RF1 [Coffea arabica])

HSP 1 Score: 41.6 bits (96), Expect = 1.9e+00
Identity = 24/47 (51.06%), Postives = 32/47 (68.09%), Query Frame = 1


Query: 144 GKILSPIVTKKLKETSEMEEKGESEEEIEGVIEENTSPSLSFWKKRR 191
           G+I SPI+TKKLKETS+ EE  ESEE  EG +E  T+  +   K+ +
Sbjct: 235 GRIPSPILTKKLKETSKTEEGVESEE--EGDVEIETTSEMKGTKQEQ 279

HSP 2 Score: 88.2 bits (217), Expect = 1.8e-14
Identity = 45/54 (83.33%), Postives = 48/54 (88.89%), Query Frame = 1


Query: 98  QIINSVVVVGLYYGFLTTFSIGSSYLFLLRARVMEEGAEKKVSATTGKILSPIV 152
           +IINSVVVVGLYYGFLTTFSIG SYLFLLRARVMEEG EKKVSATTG I   ++
Sbjct: 17  KIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVMEEGTEKKVSATTGFITGQLM 70

[Close]

BLAST of ClCG04G001030 vs. NCBI nr
Match: gi|290489064|gb|ADD30916.1| (putative RF1 protein (chloroplast) [Ficus sp. Moore 315])

HSP 1 Score: 42.4 bits (98), Expect = 1.1e+00
Identity = 27/56 (48.21%), Postives = 36/56 (64.29%), Query Frame = 1


Query: 144 GKILSPIVTKKLKETSEMEEKGESE-----EEIEGVIEENTSPSLSFWKKRRIPTK 195
           G+I SPI+TKKLKET E + +  SE     +E EG  EE+ SPSL F +++  P K
Sbjct: 229 GRIPSPILTKKLKETEERDVEKTSETKGTKQEQEGSTEEDPSPSL-FSEEKEDPEK 283

HSP 2 Score: 88.2 bits (217), Expect = 1.8e-14
Identity = 45/54 (83.33%), Postives = 48/54 (88.89%), Query Frame = 1


Query: 98  QIINSVVVVGLYYGFLTTFSIGSSYLFLLRARVMEEGAEKKVSATTGKILSPIV 152
           +IINSVVVVGLYYGFLTTFSIG SYLFLLRARVMEEG EKKVSATTG I   ++
Sbjct: 17  KIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVMEEGTEKKVSATTGFITGQLM 70

[Close]

BLAST of ClCG04G001030 vs. NCBI nr
Match: gi|511348508|ref|YP_008081412.1| (hypothetical chloroplast RF1 (chloroplast) [Tetracentron sinense])

HSP 1 Score: 50.8 bits (120), Expect = 3.2e-03
Identity = 31/57 (54.39%), Postives = 34/57 (59.65%), Query Frame = 1


Query: 144 GKILSPIVTKKLKETSEMEEKGESEEEI-----------------EGVIEENTSPSL 184
           G+I SPIVTKKLKETSE EE+GESEEE                  EG  EE+ SPSL
Sbjct: 235 GRIPSPIVTKKLKETSETEERGESEEETDVEIETTSETKGTKQEQEGSTEEDPSPSL 291

HSP 2 Score: 88.2 bits (217), Expect = 1.8e-14
Identity = 45/54 (83.33%), Postives = 48/54 (88.89%), Query Frame = 1


Query: 98  QIINSVVVVGLYYGFLTTFSIGSSYLFLLRARVMEEGAEKKVSATTGKILSPIV 152
           +IINSVVVVGLYYGFLTTFSIG SYLFLLRARVMEEG EKKVSATTG I   ++
Sbjct: 17  KIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVMEEGTEKKVSATTGFITGQLM 70

The following BLAST results are available for this feature:

BLAST of ClCG04G001030 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TI214_COFAR	1.1e-16	83.33	Protein TIC 214 OS=Coffea arabica GN=TIC214 PE=3 SV=1	[more]
TI214_BUXMI	1.1e-16	83.33	Protein TIC 214 OS=Buxus microphylla GN=TIC214 PE=3 SV=1	[more]
TI214_NANDO	3.3e-16	81.48	Protein TIC 214 OS=Nandina domestica GN=TIC214 PE=3 SV=1	[more]
TI214_CALFG	3.3e-16	81.48	Protein TIC 214 OS=Calycanthus floridus var. glaucus GN=TIC214 PE=3 SV=1	[more]
TI214_PLAOC	3.3e-16	81.48	Protein TIC 214 OS=Platanus occidentalis GN=TIC214 PE=3 SV=1	[more]

BLAST of ClCG04G001030 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0S2IGL0_CUCPE	1.2e-14	83.33	Ycf1 OS=Cucurbita pepo var. ozarkana GN=ycf1 PE=4 SV=1	[more]
A0A0S2IGL0_CUCPE	3.9e+00	49.02	Ycf1 OS=Cucurbita pepo var. ozarkana GN=ycf1 PE=4 SV=1	[more]
A0A166GJJ8_COFCA	1.3e+00	51.06	Ycf1 OS=Coffea canephora GN=ycf1 PE=4 SV=1	[more]
A0A0S2IH24_CUCPE	3.9e+00	49.02	Uncharacterized protein OS=Cucurbita pepo var. texana PE=4 SV=1	[more]
A0A0S2IFT8_9ROSI	3.9e+00	49.02	Uncharacterized protein OS=Cucurbita okeechobeensis PE=4 SV=1	[more]

BLAST of ClCG04G001030 vs. TAIR10


Match Name	E-value	Identity	Description
ATCG01130.1	2.7e-16	78.95	ATCG01130.1 Ycf1 protein	[more]
ATCG01000.1	2.7e-16	78.95	ATCG01000.1 Ycf1 protein	[more]
ATMG00370.1	2.7e-16	78.95	ATMG00370.1 Ycf1 protein	[more]
AT2G07739.1	1.3e-15	77.19	Ycf1 protein	[more]

BLAST of ClCG04G001030 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|149390599\|ref\|YP_001294243.1\|	1.8e-14	83.33	hypothetical chloroplast RF1 [Buxus microphylla]	[more]
gi\|149390599\|ref\|YP_001294243.1\|	1.7e-01	66.67	hypothetical chloroplast RF1 [Buxus microphylla]	[more]
gi\|116617166\|ref\|YP_817540.1\|	1.9e+00	51.06	hypothetical chloroplast RF1 [Coffea arabica]	[more]
gi\|290489064\|gb\|ADD30916.1\|	1.1e+00	48.21	putative RF1 protein (chloroplast) [Ficus sp. Moore 315]	[more]
gi\|511348508\|ref\|YP_008081412.1\|	3.2e-03	54.39	hypothetical chloroplast RF1 (chloroplast) [Tetracentron sinense]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008896	TIC214

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015031	protein transport
cellular_component	GO:0009706	chloroplast inner membrane
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG04G001030.1	ClCG04G001030.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008896	Protein TIC214	PFAM	PF05758	Ycf1	coord: 102..146 score: 1.0
None	No IPR available	PANTHER	PTHR33163	FAMILY NOT NAMED	coord: 99..144 score: 1.5

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG04G001030	Wax gourd	wcgwgoB387
ClCG04G001030	Wax gourd	wcgwgoB397
ClCG04G001030	Cucumber (Gy14) v1	cgywcgB608
ClCG04G001030	Cucurbita maxima (Rimu)	cmawcgB586
ClCG04G001030	Cucurbita maxima (Rimu)	cmawcgB770
ClCG04G001030	Cucurbita moschata (Rifu)	cmowcgB585
ClCG04G001030	Cucurbita moschata (Rifu)	cmowcgB771
ClCG04G001030	Wild cucumber (PI 183967)	cpiwcgB319
ClCG04G001030	Cucumber (Chinese Long) v2	cuwcgB303
ClCG04G001030	Melon (DHL92) v3.5.1	mewcgB526
ClCG04G001030	Watermelon (97103) v1	wcgwmB260
ClCG04G001030	Cucurbita pepo (Zucchini)	cpewcgB079
ClCG04G001030	Cucurbita pepo (Zucchini)	cpewcgB434
ClCG04G001030	Bottle gourd (USVL1VR-Ls)	lsiwcgB135
ClCG04G001030	Cucumber (Gy14) v2	cgybwcgB283
ClCG04G001030	Melon (DHL92) v3.6.1	medwcgB522
ClCG04G001030	Silver-seed gourd	carwcgB0276
ClCG04G001030	Silver-seed gourd	carwcgB0832
ClCG04G001030	Cucumber (Chinese Long) v3	cucwcgB319
ClCG04G001030	Watermelon (97103) v2	wcgwmbB200