ClCG03G015140.1 (mRNA) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG03G015140.1
Type	mRNA
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Unknown protein
Location	CG_Chr03 : 30098255 .. 30098723 (+)
Sequence length	423

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAAAGCTGATTGTCCTCTTCATGGTTGCCACGTCATCCATGGTCGGAGCATACGAGGTTCTTCTCGGCGCTTACTATGGACTTGCTGGCAACAACCTGCCACCACCATGGAAGGTGGTGCCAACTGTGTCGAAAATACAACATTCGTCGGGTTCGTTTGAATGAACCAAAGCTCGATGTTGTCGAAGCCTTTCCAGGCATGGGAATTGACCTCTCTTTTGGTGTGTCCAACAGCTTGATAACAAACATGGCCACCAATCACACCATACCTACATCGCACCCTTCATCCGCGATTTCACCATCAACTACATCATTATTGTTGGTCACGGAATCCCTTCAAAATCTCCTCAATGCTCGTTACCTCGGACAAGTGAAAACCACCACATTGGTTGGCTTATCCTCATTGGCAGTTAAAACCCCTCCATCTAGTGGCGCGTTTGACACCCCACCATTTCCAAGAACATGA

mRNA sequence

ATGGCAAAGCTGATTGTCCTCTTCATGGTTGCCACGTCATCCATGGTCGGAGCATACGAGGTTCTTCTCGGCGCTTACTATGGACTTGCTGGCAACAACCTGCCACCACCATGGAAGGTGGTGCCAACTGTGTCGAAAATACAACATTCGTCGGGCATGGGAATTGACCTCTCTTTTGGTGTGTCCAACAGCTTGATAACAAACATGGCCACCAATCACACCATACCTACATCGCACCCTTCATCCGCGATTTCACCATCAACTACATCATTATTGTTGGTCACGGAATCCCTTCAAAATCTCCTCAATGCTCGTTACCTCGGACAAGTGAAAACCACCACATTGGTTGGCTTATCCTCATTGGCAGTTAAAACCCCTCCATCTAGTGGCGCGTTTGACACCCCACCATTTCCAAGAACATGA

Coding sequence (CDS)

ATGGCAAAGCTGATTGTCCTCTTCATGGTTGCCACGTCATCCATGGTCGGAGCATACGAGGTTCTTCTCGGCGCTTACTATGGACTTGCTGGCAACAACCTGCCACCACCATGGAAGGTGGTGCCAACTGTGTCGAAAATACAACATTCGTCGGGCATGGGAATTGACCTCTCTTTTGGTGTGTCCAACAGCTTGATAACAAACATGGCCACCAATCACACCATACCTACATCGCACCCTTCATCCGCGATTTCACCATCAACTACATCATTATTGTTGGTCACGGAATCCCTTCAAAATCTCCTCAATGCTCGTTACCTCGGACAAGTGAAAACCACCACATTGGTTGGCTTATCCTCATTGGCAGTTAAAACCCCTCCATCTAGTGGCGCGTTTGACACCCCACCATTTCCAAGAACATGA

Protein sequence

MAKLIVLFMVATSSMVGAYEVLLGAYYGLAGNNLPPPWKVVPTVSKIQHSSGMGIDLSFGVSNSLITNMATNHTIPTSHPSSAISPSTTSLLLVTESLQNLLNARYLGQVKTTTLVGLSSLAVKTPPSSGAFDTPPFPRT

Homology

[Close]

BLAST of ClCG03G015140.1 vs. TrEMBL
Match: A0A0A0LR03_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G416760 PE=3 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 3.6e-21
Identity = 68/165 (41.21%), Postives = 88/165 (53.33%), Query Frame = 1


Query: 4   LIVLFMVATSSMVG-AYEVLLGAYYGLAGNNLPPPWKVV---------------PTVSKI 63
           + +LFMVA SS+V     + +GAYYG  GNNLPPPWKVV               P +  +
Sbjct: 9   IALLFMVAMSSIVARGNNIFVGAYYGSEGNNLPPPWKVVQLCEKYNIRRIRFNEPNLDIL 68

Query: 64  QHSSGMGIDLSFGVSNSLITNMATNHTIPTSHPSSAISPST------------------- 123
           +   G  I++SF V   LI N ATN T         + P                     
Sbjct: 69  EQFRGTNIEVSFSVPGELIINQATNQTAVEEWFVKYVVPFIGEFTINYIVVGDKVIPGLD 128

Query: 124 TSLLLVTESLQNLLNARYLGQVKTTTLVGLSSLAVKTPPSSGAFD 134
            ++L V  SLQ+LLN+RYLGQVK TT+VGL++L V++PPSSGAFD
Sbjct: 129 DNILPVMRSLQDLLNSRYLGQVKITTMVGLTALGVQSPPSSGAFD 173

[Close]

BLAST of ClCG03G015140.1 vs. TrEMBL
Match: A0A0A0LZ10_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G595900 PE=3 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 6.2e-21
Identity = 69/173 (39.88%), Postives = 96/173 (55.49%), Query Frame = 1


Query: 1   MAKLI-VLFMVAT----SSMVGAYEVLLGAYYGLAGNNLPPPWKV--------------- 60
           MAK++ ++F++A+    +++VGAY++LLGAYYGL G+NLPPPWKV               
Sbjct: 1   MAKVVQIVFLMASILMAATVVGAYDILLGAYYGLVGDNLPPPWKVVQLCEQYNIRRVRLD 60

Query: 61  VPTVSKIQHSSGMGIDLSFGVSNSLITNMATNHTIPTSH-------------------PS 120
           VP V  +    G  ID+SFG+ N+++T++A N  +                         
Sbjct: 61  VPDVDVLTAFRGGAIDVSFGIPNNMLTDLANNKGLVEEWFNTYVKTFVDDFRINYIIVGD 120

Query: 121 SAISPSTTSLLLVTESLQNLLNARYLGQVKTTTLVGL-SSLAVKTPPSSGAFD 134
            AI      +L +  SLQ+LLNA YLGQVK TTLVG  ++L  K PPSSG FD
Sbjct: 121 KAIPSHANFILPIMMSLQDLLNANYLGQVKLTTLVGYNAALVSKDPPSSGTFD 173

[Close]

BLAST of ClCG03G015140.1 vs. TrEMBL
Match: A0A0A0LWM4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G595910 PE=3 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.3e-10
Identity = 44/101 (43.56%), Postives = 57/101 (56.44%), Query Frame = 1


Query: 52  GMGIDLSFGVSNSLITNMATNHTIPTSHPSSAISPST-------------------TSLL 111
           G  I++SF V   LI+N ATNHT         + P                      ++L
Sbjct: 8   GTNIEVSFSVPGELISNQATNHTAVEEWFVKYVVPFIGEFTINYIVVGDKVIPGLDDNIL 67

Query: 112 LVTESLQNLLNARYLGQVKTTTLVGLSSLAVKTPPSSGAFD 134
            V  SLQ+LLN+RYLGQVK TT+VGL++L V++PPSSGAFD
Sbjct: 68  PVMRSLQDLLNSRYLGQVKITTMVGLTALGVQSPPSSGAFD 108

[Close]

BLAST of ClCG03G015140.1 vs. TrEMBL
Match: A0A0Q3JGG3_BRADI (Uncharacterized protein OS=Brachypodium distachyon GN=BRADI_2g60497 PE=3 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 2.5e-06
Identity = 48/170 (28.24%), Postives = 77/170 (45.29%), Query Frame = 1


Query: 4   LIVLFMVATSSMVGAYEVLLGAYYGLAGNNLPPPWKVV---------------PTVSKIQ 63
           + +L  +A  + + A    +G  YG++GNNLPP   VV               P  + + 
Sbjct: 18  MALLLGLAAVASIPARAASVGVCYGMSGNNLPPASTVVGMLRDNGFTSVRLYAPDAAALA 77

Query: 64  HSSGMGIDLSFGVSNSLITNMATNHTIPTS--------HP----------SSAISPSTTS 123
             +G GI +  G  N ++ +++TN +   S        HP          +     +T  
Sbjct: 78  ALAGTGIGVVVGAPNDVVPSLSTNPSFAASWVRDNIAAHPYVSFKYLSVGNEISGENTQH 137

Query: 124 LLLVTESLQNLLNARYLGQ-VKTTTLVGLSSLAVKTPPSSGAF--DTPPF 138
           L+   E++   LNA  LG  V+ TT +  +++AV TPPS+GAF  D  PF
Sbjct: 138 LVPAMENVLAALNAAGLGMGVQVTTAISQATIAVHTPPSAGAFAEDCKPF 187

[Close]

BLAST of ClCG03G015140.1 vs. TrEMBL
Match: I1HV43_BRADI (Uncharacterized protein OS=Brachypodium distachyon PE=3 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 2.5e-06
Identity = 48/170 (28.24%), Postives = 77/170 (45.29%), Query Frame = 1


Query: 4   LIVLFMVATSSMVGAYEVLLGAYYGLAGNNLPPPWKVV---------------PTVSKIQ 63
           + +L  +A  + + A    +G  YG++GNNLPP   VV               P  + + 
Sbjct: 16  MALLLGLAAVASIPARAASVGVCYGMSGNNLPPASTVVGMLRDNGFTSVRLYAPDAAALA 75

Query: 64  HSSGMGIDLSFGVSNSLITNMATNHTIPTS--------HP----------SSAISPSTTS 123
             +G GI +  G  N ++ +++TN +   S        HP          +     +T  
Sbjct: 76  ALAGTGIGVVVGAPNDVVPSLSTNPSFAASWVRDNIAAHPYVSFKYLSVGNEISGENTQH 135

Query: 124 LLLVTESLQNLLNARYLGQ-VKTTTLVGLSSLAVKTPPSSGAF--DTPPF 138
           L+   E++   LNA  LG  V+ TT +  +++AV TPPS+GAF  D  PF
Sbjct: 136 LVPAMENVLAALNAAGLGMGVQVTTAISQATIAVHTPPSAGAFAEDCKPF 185

[Close]

BLAST of ClCG03G015140.1 vs. NCBI nr
Match: gi|659100571|ref|XP_008451158.1| (PREDICTED: uncharacterized protein LOC103492536 [Cucumis melo])

HSP 1 Score: 133.7 bits (335), Expect = 2.6e-28
Identity = 83/169 (49.11%), Postives = 99/169 (58.58%), Query Frame = 1


Query: 4   LIVLFMVATSSMV-GAYEVLLGAYYGLAGNNLPPPWKVV---------------PTVSKI 63
           + +LFMV  SS+V GAY VLLGAYYGL  NNLP PWKV+               P +  I
Sbjct: 9   IALLFMVDMSSIVLGAYNVLLGAYYGLESNNLPTPWKVMQLCEKYNIRRIRIDEPNLDVI 68

Query: 64  QHSSGMGIDLSFGVSNSLITNMATNHTIPTSHPSSAISPSTT------------------ 123
           +   G  I++SFGVSN LITNMATNHT      ++ I+P                     
Sbjct: 69  ESFRGTNIEVSFGVSNGLITNMATNHTAVEEWFANYIAPFIDDLTINYIVVGDKAVPGLD 128

Query: 124 -SLLLVTESLQNLLNARYLGQVKTTTLVGLSSLAVKTPPSSGAFDTPPF 138
            S+L V +SLQ+LLN R+LGQVK TTLVGLS+L VK PPSSGAFD   F
Sbjct: 129 DSILPVMKSLQDLLNRRFLGQVKITTLVGLSALGVKAPPSSGAFDPNVF 177

[Close]

BLAST of ClCG03G015140.1 vs. NCBI nr
Match: gi|659100571|ref|XP_008451158.1| (PREDICTED: uncharacterized protein LOC103492536 [Cucumis melo])

HSP 1 Score: 115.5 bits (288), Expect = 7.3e-23
Identity = 73/160 (45.62%), Postives = 87/160 (54.37%), Query Frame = 1


Query: 8   FMVATSSMVGAYEVLLGAYYGLAGNNLPPPWKVV---------------PTVSKIQHSSG 67
           F   +S +V AY+VLLGAYYG  GNNLPPP KVV               P    I    G
Sbjct: 325 FYAMSSIVVRAYDVLLGAYYGTEGNNLPPPEKVVQLCQKYNIRRIRFSEPNFDIIDAFRG 384

Query: 68  MGIDLSFGVSNSLITNMATNHTIPTSHPSSAISPST-------------------TSLLL 127
             I+LSF V+  LITNMATNHT       + ++P                      ++L 
Sbjct: 385 KDIELSFSVTGELITNMATNHTAVEEWFVNYVAPFIGDFTINYIIVGDKAIPGLDDNILP 444

Query: 128 VTESLQNLLNARYLGQVKTTTLVGLSSLAVKTPPSSGAFD 134
           V +SLQ LLN RYLGQVK TTLVGL++L V+TPPSSG FD
Sbjct: 445 VMKSLQVLLNGRYLGQVKITTLVGLAALGVQTPPSSGTFD 484

HSP 2 Score: 111.3 bits (277), Expect = 1.4e-21
Identity = 74/174 (42.53%), Postives = 97/174 (55.75%), Query Frame = 1


Query: 1   MAKL--IVLFMVAT----SSMVGAYEVLLGAYYGLAGNNLPPPWKVV------------- 60
           MAKL  I++F++A+    +S+V A++VLLGAYYGL+GNNLPPPWKVV             
Sbjct: 1   MAKLVQIIVFLMASILMPTSLVRAHDVLLGAYYGLSGNNLPPPWKVVHLCEKYNIRRIRL 60

Query: 61  --PTVSKIQHSSGMGIDLSFGVSNSLITNMATNHTIPTSHPSSAISPSTTS--------- 120
             PTV  +    G  IDLSF V N ++T+MATN  +     ++ I P             
Sbjct: 61  DIPTVDVLTAFRGSNIDLSFSVPNDMLTDMATNKALVEEWFNTYIKPFVDDFKINYIIVG 120

Query: 121 ----------LLLVTESLQNLLNARYLGQVKTTTLVGL-SSLAVKTPPSSGAFD 134
                     +L V  SLQ+LLNA Y GQVK TTLVG  ++L  + PPSSG F+
Sbjct: 121 DKAVPGLDNFILPVMMSLQDLLNANYFGQVKLTTLVGYNAALVSQDPPSSGVFN 174

[Close]

BLAST of ClCG03G015140.1 vs. NCBI nr
Match: gi|778674443|ref|XP_004153772.2| (PREDICTED: lichenase-2-like [Cucumis sativus])

HSP 1 Score: 109.4 bits (272), Expect = 5.2e-21
Identity = 68/165 (41.21%), Postives = 88/165 (53.33%), Query Frame = 1


Query: 4   LIVLFMVATSSMVG-AYEVLLGAYYGLAGNNLPPPWKVV---------------PTVSKI 63
           + +LFMVA SS+V     + +GAYYG  GNNLPPPWKVV               P +  +
Sbjct: 9   IALLFMVAMSSIVARGNNIFVGAYYGSEGNNLPPPWKVVQLCEKYNIRRIRFNEPNLDIL 68

Query: 64  QHSSGMGIDLSFGVSNSLITNMATNHTIPTSHPSSAISPST------------------- 123
           +   G  I++SF V   LI N ATN T         + P                     
Sbjct: 69  EQFRGTNIEVSFSVPGELIINQATNQTAVEEWFVKYVVPFIGEFTINYIVVGDKVIPGLD 128

Query: 124 TSLLLVTESLQNLLNARYLGQVKTTTLVGLSSLAVKTPPSSGAFD 134
            ++L V  SLQ+LLN+RYLGQVK TT+VGL++L V++PPSSGAFD
Sbjct: 129 DNILPVMRSLQDLLNSRYLGQVKITTMVGLTALGVQSPPSSGAFD 173

[Close]

BLAST of ClCG03G015140.1 vs. NCBI nr
Match: gi|778665329|ref|XP_004144124.2| (PREDICTED: putative glucan endo-1,3-beta-glucosidase GVI [Cucumis sativus])

HSP 1 Score: 108.6 bits (270), Expect = 8.9e-21
Identity = 69/173 (39.88%), Postives = 96/173 (55.49%), Query Frame = 1


Query: 1   MAKLI-VLFMVAT----SSMVGAYEVLLGAYYGLAGNNLPPPWKV--------------- 60
           MAK++ ++F++A+    +++VGAY++LLGAYYGL G+NLPPPWKV               
Sbjct: 1   MAKVVQIVFLMASILMAATVVGAYDILLGAYYGLVGDNLPPPWKVVQLCEQYNIRRVRLD 60

Query: 61  VPTVSKIQHSSGMGIDLSFGVSNSLITNMATNHTIPTSH-------------------PS 120
           VP V  +    G  ID+SFG+ N+++T++A N  +                         
Sbjct: 61  VPDVDVLTAFRGGAIDVSFGIPNNMLTDLANNKGLVEEWFNTYVKTFVDDFRINYIIVGD 120

Query: 121 SAISPSTTSLLLVTESLQNLLNARYLGQVKTTTLVGL-SSLAVKTPPSSGAFD 134
            AI      +L +  SLQ+LLNA YLGQVK TTLVG  ++L  K PPSSG FD
Sbjct: 121 KAIPSHANFILPIMMSLQDLLNANYLGQVKLTTLVGYNAALVSKDPPSSGTFD 173

[Close]

BLAST of ClCG03G015140.1 vs. NCBI nr
Match: gi|778665333|ref|XP_004144115.2| (PREDICTED: lichenase-2-like [Cucumis sativus])

HSP 1 Score: 74.3 bits (181), Expect = 1.9e-10
Identity = 44/101 (43.56%), Postives = 57/101 (56.44%), Query Frame = 1


Query: 52  GMGIDLSFGVSNSLITNMATNHTIPTSHPSSAISPST-------------------TSLL 111
           G  I++SF V   LI+N ATNHT         + P                      ++L
Sbjct: 8   GTNIEVSFSVPGELISNQATNHTAVEEWFVKYVVPFIGEFTINYIVVGDKVIPGLDDNIL 67

Query: 112 LVTESLQNLLNARYLGQVKTTTLVGLSSLAVKTPPSSGAFD 134
            V  SLQ+LLN+RYLGQVK TT+VGL++L V++PPSSGAFD
Sbjct: 68  PVMRSLQDLLNSRYLGQVKITTMVGLTALGVQSPPSSGAFD 108

The following BLAST results are available for this feature:

BLAST of ClCG03G015140.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LR03_CUCSA	3.6e-21	41.21	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G416760 PE=3 SV=1	[more]
A0A0A0LZ10_CUCSA	6.2e-21	39.88	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G595900 PE=3 SV=1	[more]
A0A0A0LWM4_CUCSA	1.3e-10	43.56	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G595910 PE=3 SV=1	[more]
A0A0Q3JGG3_BRADI	2.5e-06	28.24	Uncharacterized protein OS=Brachypodium distachyon GN=BRADI_2g60497 PE=3 SV=1	[more]
I1HV43_BRADI	2.5e-06	28.24	Uncharacterized protein OS=Brachypodium distachyon PE=3 SV=1	[more]

BLAST of ClCG03G015140.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659100571\|ref\|XP_008451158.1\|	2.6e-28	49.11	PREDICTED: uncharacterized protein LOC103492536 [Cucumis melo]	[more]
gi\|659100571\|ref\|XP_008451158.1\|	7.3e-23	45.63	PREDICTED: uncharacterized protein LOC103492536 [Cucumis melo]	[more]
gi\|778674443\|ref\|XP_004153772.2\|	5.2e-21	41.21	PREDICTED: lichenase-2-like [Cucumis sativus]	[more]
gi\|778665329\|ref\|XP_004144124.2\|	8.9e-21	39.88	PREDICTED: putative glucan endo-1,3-beta-glucosidase GVI [Cucumis sativus]	[more]
gi\|778665333\|ref\|XP_004144115.2\|	1.9e-10	43.56	PREDICTED: lichenase-2-like [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
ClCG03G015140	ClCG03G015140	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
ClCG03G015140.1	ClCG03G015140.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG03G015140.1.cds1	ClCG03G015140.1.cds1	CDS
ClCG03G015140.1.cds2	ClCG03G015140.1.cds2	CDS