ClCG03G012140.1 (mRNA) Watermelon (Charleston Gray)

Overview
NameClCG03G012140.1
TypemRNA
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionUnknown protein
LocationCG_Chr03 : 24332910 .. 24335845 (+)
Sequence length753
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTAAACACCAGAGAAAAAGCTTATCAACCTGAATCTAAGATGGTGAGATTTAAGGAAAAGGCTAATCATGTTCTGGTAACCACTACAAATACATTTGACTGCCTCTCACTTGGTCAAGTGGAAAAGATCAAATGCCTCTATTTCTGCTGTAGCTAAGAGGAAAATTGATGTGTAATCTACATCTGCCTTAACCATGACAAACCTTGTGGAGCATGTAAGACAATTCTCCCTGAATCTAGTAAGTCATCATCTAGTAGTTCTTCTGGGTCTGAGCAAGATTATAGAGTTGTAAGTCATGACACTAGTTTGAAAACTATGCATGAAAGTGGAGAGATCTCAACCAAGAAGCTTGAAAATGTTAAGGTTTCTAAAAACTATTTCTGAGACTGAAAATATTGACGTTGTTGTTGATAATTGTAGCCTTGGTAGAGTAGATATTATTGCCTCTGCTAAGAATGTAGCTAGTGCATATGTTGAGACATAAAGGGTTGTTGGTGGTTGTGGTCTTGACACCAACCCTCATGTTGAATCAAATGTGTCTAATGTTGTTCCCAACATCTCTTTTAAGAAATCTTCTCTTTCTGAGAAAGATAGTGTTGTTGCTATAGAAGAGTGTAATGTTCAGATTGATAATCATTAAGGTCTTGTGAGGACTGTTGAAATTACTCAAAAACTCAATGTTGTTCCTGAACTTGAAGAAGGTGTTCTTAATATCGGCAATAAGACTGTTGTTTGTGATTCTAATATTTCTGCTGATTCCAATTTAGATGATGACATTCCTTTGAGCACGCTGGTGTCTAAAGTAAAGCTTGTCACCAAAGATGTCAATGCAAATTCTAAAACATCAAAAGAGGCATCAAATAAGAAATATTTTGAAGATCATTCTGAATCATCGAGAGATTGAGGGCTAAAGAGCAGCACTAATGATGATGTTAAGCCAGTGCAAGCTCCTTTGACTCGTGCCTCCTCTCATGCTCGAGAGAAGAAGGATACTTCCTCCTTTGTTCCTTCAATTTCCCATGATGGTATCTCGATTCACTCGGAGGAAAGTACAATTTTATGGAAGTATGTTGTGAATAGGACAACTTTTGTTGAAAAAGAGCTGTCTGATCGGGCCCAAGAGGGCATGAAGATCATGGAACCGATTCTAAAGTCTGATCTTGTCAAGACTATCCTTAATCTTAGTCCATACTATCCAAAGTTGGTTAAAAAATTCATTGTGAATCTTTCTCCATCCTTTAATAATGTCAATTCTCCCCAGTTCTGCCGTGTTCATGTTTGAAGTCACACCTTGGTGTTTACTGCCTCTGTTATTAAAAATTTTCTTAACAGAATTGTTCCTGCAAATACTAGAGAGTTATGTCCCTCAACGAAGGAGCTTGTGTAGAAACTCACAGAGGAATGAAGAAAACCTAGCCTACGACTGGTCAACTTGCTTCAGCTGATTTAAGTGCTAAATATGCAATTCTCTTCATAATCGAAATGGCAAATTGGTGCCCTTCATTGCATCACTCTAGATTCTCTATTTCCTTGGAAAATATTTTATATCAAATAGGGAAGTTAGATTCATTTGACTATGGAGTCTTTGTTATTAATCTAATAAAGCGCCATATTGGGTTTGGGTCTCAAGCTCTCATATTGCCCATTGTTTATCCACGTTTGATTTATGGCATCTTGTTGTGTTAAAAATTGAATTACTTACTCCAGATGAACCAATTGGTGCTAATTATGACTTACTAAACTTTAATTACAAACTCTTTCAAGGTCATCATGTGCCTGATATTGCCCCTCCATCTCCCTTTAAACATGAAGATACTCCAAGTGCTCAGTTAGTAAATTTTCCTTTTGGAAAAAGGCTTATGCACTCATTGACTTCTAAGCTTCATAATTTGAATGAAGTGATTGATTGTACTTTTGACTGTAAGCAAGAGGTTACTCTCCTTTTGAATGTGATGAGGAGAGTCGTTAATGATGGTGGGTAGGTTGGGCCTTCTCAGTAATTTTTTTAAGCCAAAGGGAGGAGCAGTTGTTGTGTTTGGTTTTGTTTGTTGTTGGTTTGGGTTGTTTAATCTTTGGTTTGGTATCTTGAACTTCTGCCAGTGGTTCTTTTTGTTGATGAACTATTGTTGGTTTGTCTTCTTTGTTGATGTAAACATTATCTTATAGGAACTCTATTTGAATACTATTAGGTTTTCCTCTCTTCAGGTATTCTATAGTTGAATGGTTGAGTGTGAAAGTGTTATGTTTGATTCTATCTTGAAAAAATATATTTTAGCCAATGAGGGAGTTTGTTAAGTTTGTGATGTTGCTTACATATATTTGTTAGTGGTTCTTTTTGTTGATGAATTGTTGTTGGCTACATATATTTGTTTGTTAAGTTTGTGATGTTCCTGCAAATACCAAAGAGTTATGTCCCTCAATAAAGGAGCTTGTGTAAAAACTCACAGGGGGAATGAAGAAATCCTAGCCTAAGACTGGTTAACTTACTTCAGTTGATCTAAGTGCTAAATATGCAATTCTCTTCATAATTGTAATTGCAAATTTGTGCCCTTCATCACATCACTCTGGACTCTCTATTTCCTTGGAAAATCTTTATATTAGATAAGGAAGTCAACTTTGTTTGACTATGGAGTCTTTGTCACTAATCTACTGAAGCGCCATATTGGGTCTCATACTCTCATATTGCCCATTGTTTATCTCCGTCTGATTTATGGCATCTTGTTGTCTTAAAAAATGATTTACTTACTTAGATGAACAAGTTGGGGCTAATCCTGACTTACTAAACTTAATTACAAGCTCTTTCAAGGTCACATGTACTTGATATTGCCCCTCCATCTCCCTCTAAACATGAAGATGCTCCAAGTGCTTAGTTAGTAAATTCTCCTTTTAGCAAAAGGCTTATGCATTCCTTGACTGCTAGCTTCATACTCTGA

mRNA sequence

ATGGTAAACACCAGAGAAAAAGCTTATCAACCTGAATCTAAGATGGTGAGATTTAAGGAAAAGGCTAATCATGTTCTGGTAACCACTACAAATACATTTGACTGCCTCTCACTTGTGCAAGCTCCTTTGACTCGTGCCTCCTCTCATGCTCGAGAGAAGAAGGATACTTCCTCCTTTGTTCCTTCAATTTCCCATGATGGTATCTCGATTCACTCGGAGGAAAGTACAATTTTATGGAAGTATGTTGTGAATAGGACAACTTTTGTTGAAAAAGAGCTTCCATACTATCCAAAGTTGGTTAAAAAATTCATTGTGAATCTTTCTCCATCCTTTAATAATGTCAATTCTCCCCAGTTCTGCCGTCATCATGTGCCTGATATTGCCCCTCCATCTCCCTTTAAACATGAAGATACTCCAAGTGCTCAGTTAGTAAATTTTCCTTTTGGAAAAAGGCTTATGCACTCATTGACTTCTAAGCTTCATAATTTGAATGAAGTGATTGATTGTACTTTTGACTGTAAGCAAGAGATAAGGAAGTCAACTTTGTTTGACTATGGAGTCTTTGTCACTAATCTACTGAAGCGCCATATTGGGTCTCATACTCTCATATTGCCCATTGTTTATCTCCGTCTGATTTATGGCATCTTGTCACATGTACTTGATATTGCCCCTCCATCTCCCTCTAAACATGAAGATGCTCCAAGTGCTTACAAAAGGCTTATGCATTCCTTGACTGCTAGCTTCATACTCTGA

Coding sequence (CDS)

ATGGTAAACACCAGAGAAAAAGCTTATCAACCTGAATCTAAGATGGTGAGATTTAAGGAAAAGGCTAATCATGTTCTGGTAACCACTACAAATACATTTGACTGCCTCTCACTTGTGCAAGCTCCTTTGACTCGTGCCTCCTCTCATGCTCGAGAGAAGAAGGATACTTCCTCCTTTGTTCCTTCAATTTCCCATGATGGTATCTCGATTCACTCGGAGGAAAGTACAATTTTATGGAAGTATGTTGTGAATAGGACAACTTTTGTTGAAAAAGAGCTTCCATACTATCCAAAGTTGGTTAAAAAATTCATTGTGAATCTTTCTCCATCCTTTAATAATGTCAATTCTCCCCAGTTCTGCCGTCATCATGTGCCTGATATTGCCCCTCCATCTCCCTTTAAACATGAAGATACTCCAAGTGCTCAGTTAGTAAATTTTCCTTTTGGAAAAAGGCTTATGCACTCATTGACTTCTAAGCTTCATAATTTGAATGAAGTGATTGATTGTACTTTTGACTGTAAGCAAGAGATAAGGAAGTCAACTTTGTTTGACTATGGAGTCTTTGTCACTAATCTACTGAAGCGCCATATTGGGTCTCATACTCTCATATTGCCCATTGTTTATCTCCGTCTGATTTATGGCATCTTGTCACATGTACTTGATATTGCCCCTCCATCTCCCTCTAAACATGAAGATGCTCCAAGTGCTTACAAAAGGCTTATGCATTCCTTGACTGCTAGCTTCATACTCTGA

Protein sequence

MVNTREKAYQPESKMVRFKEKANHVLVTTTNTFDCLSLVQAPLTRASSHAREKKDTSSFVPSISHDGISIHSEESTILWKYVVNRTTFVEKELPYYPKLVKKFIVNLSPSFNNVNSPQFCRHHVPDIAPPSPFKHEDTPSAQLVNFPFGKRLMHSLTSKLHNLNEVIDCTFDCKQEIRKSTLFDYGVFVTNLLKRHIGSHTLILPIVYLRLIYGILSHVLDIAPPSPSKHEDAPSAYKRLMHSLTASFIL
Homology
[Close]
BLAST of ClCG03G012140.1 vs. NCBI nr
Match: gi|659109367|ref|XP_008454678.1| (PREDICTED: uncharacterized protein LOC103495034 [Cucumis melo])

HSP 1 Score: 62.0 bits (149), Expect = 1.7e-06
Identity = 52/188 (27.66%), Postives = 85/188 (45.21%), Query Frame = 1 

Query: 53  KKDTSSFVPSISHDGISIHSEESTILWKYVVNRTTFVEKELPYYPKLVKKFIVNLSPSFN 112
           +K   + VPS+  D IS H EES   WK+V+ R    E        L+++FIVNL   FN
Sbjct: 193 RKKIPANVPSVPIDEISFHHEESVQCWKFVMQRRITDE--------LIREFIVNLPDEFN 252

Query: 113 NVNSPQFCRHHVPD----IAPP------SPFKHEDTPSAQL-VNFPFGKRLMHSLTSKLH 172
           +++S  +   H+ +    I+P       S +     P+A L + +    ++  +      
Sbjct: 253 DLSSANYQTVHIKEFKFVISPAVINGTLSTWPVNGIPAAALRIKYVILHKIGIANWFPSS 312

Query: 173 NLNEVIDCTFDCKQEIRKSTLFDYGVFVTNLLKRHIGSHTLILPIVYLRLI--YGILSHV 228
           + + +         +I      D G F+ N L RH+GS  + +PI +LRL   +G +  V
Sbjct: 313 HASSISAALGTFLYQIFNDDKVDAGSFICNQLLRHVGSFGVKVPIAFLRLFSSHGAVLTV 372

The following BLAST results are available for this feature:
BLAST of ClCG03G012140.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659109367|ref|XP_008454678.1|1.7e-0627.66PREDICTED: uncharacterized protein LOC103495034 [Cucumis melo][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
ClCG03G012140ClCG03G012140gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
ClCG03G012140.1ClCG03G012140.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
ClCG03G012140.1.cds1ClCG03G012140.1.cds1CDS
ClCG03G012140.1.cds2ClCG03G012140.1.cds2CDS
ClCG03G012140.1.cds3ClCG03G012140.1.cds3CDS
ClCG03G012140.1.cds4ClCG03G012140.1.cds4CDS
ClCG03G012140.1.cds5ClCG03G012140.1.cds5CDS
ClCG03G012140.1.cds6ClCG03G012140.1.cds6CDS
ClCG03G012140.1.cds7ClCG03G012140.1.cds7CDS