ClCG03G012140 (gene) Watermelon (Charleston Gray)

Overview
NameClCG03G012140
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionUnknown protein
LocationCG_Chr03 : 24332910 .. 24335845 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTAAACACCAGAGAAAAAGCTTATCAACCTGAATCTAAGATGGTGAGATTTAAGGAAAAGGCTAATCATGTTCTGGTAACCACTACAAATACATTTGACTGCCTCTCACTTGGTCAAGTGGAAAAGATCAAATGCCTCTATTTCTGCTGTAGCTAAGAGGAAAATTGATGTGTAATCTACATCTGCCTTAACCATGACAAACCTTGTGGAGCATGTAAGACAATTCTCCCTGAATCTAGTAAGTCATCATCTAGTAGTTCTTCTGGGTCTGAGCAAGATTATAGAGTTGTAAGTCATGACACTAGTTTGAAAACTATGCATGAAAGTGGAGAGATCTCAACCAAGAAGCTTGAAAATGTTAAGGTTTCTAAAAACTATTTCTGAGACTGAAAATATTGACGTTGTTGTTGATAATTGTAGCCTTGGTAGAGTAGATATTATTGCCTCTGCTAAGAATGTAGCTAGTGCATATGTTGAGACATAAAGGGTTGTTGGTGGTTGTGGTCTTGACACCAACCCTCATGTTGAATCAAATGTGTCTAATGTTGTTCCCAACATCTCTTTTAAGAAATCTTCTCTTTCTGAGAAAGATAGTGTTGTTGCTATAGAAGAGTGTAATGTTCAGATTGATAATCATTAAGGTCTTGTGAGGACTGTTGAAATTACTCAAAAACTCAATGTTGTTCCTGAACTTGAAGAAGGTGTTCTTAATATCGGCAATAAGACTGTTGTTTGTGATTCTAATATTTCTGCTGATTCCAATTTAGATGATGACATTCCTTTGAGCACGCTGGTGTCTAAAGTAAAGCTTGTCACCAAAGATGTCAATGCAAATTCTAAAACATCAAAAGAGGCATCAAATAAGAAATATTTTGAAGATCATTCTGAATCATCGAGAGATTGAGGGCTAAAGAGCAGCACTAATGATGATGTTAAGCCAGTGCAAGCTCCTTTGACTCGTGCCTCCTCTCATGCTCGAGAGAAGAAGGATACTTCCTCCTTTGTTCCTTCAATTTCCCATGATGGTATCTCGATTCACTCGGAGGAAAGTACAATTTTATGGAAGTATGTTGTGAATAGGACAACTTTTGTTGAAAAAGAGCTGTCTGATCGGGCCCAAGAGGGCATGAAGATCATGGAACCGATTCTAAAGTCTGATCTTGTCAAGACTATCCTTAATCTTAGTCCATACTATCCAAAGTTGGTTAAAAAATTCATTGTGAATCTTTCTCCATCCTTTAATAATGTCAATTCTCCCCAGTTCTGCCGTGTTCATGTTTGAAGTCACACCTTGGTGTTTACTGCCTCTGTTATTAAAAATTTTCTTAACAGAATTGTTCCTGCAAATACTAGAGAGTTATGTCCCTCAACGAAGGAGCTTGTGTAGAAACTCACAGAGGAATGAAGAAAACCTAGCCTACGACTGGTCAACTTGCTTCAGCTGATTTAAGTGCTAAATATGCAATTCTCTTCATAATCGAAATGGCAAATTGGTGCCCTTCATTGCATCACTCTAGATTCTCTATTTCCTTGGAAAATATTTTATATCAAATAGGGAAGTTAGATTCATTTGACTATGGAGTCTTTGTTATTAATCTAATAAAGCGCCATATTGGGTTTGGGTCTCAAGCTCTCATATTGCCCATTGTTTATCCACGTTTGATTTATGGCATCTTGTTGTGTTAAAAATTGAATTACTTACTCCAGATGAACCAATTGGTGCTAATTATGACTTACTAAACTTTAATTACAAACTCTTTCAAGGTCATCATGTGCCTGATATTGCCCCTCCATCTCCCTTTAAACATGAAGATACTCCAAGTGCTCAGTTAGTAAATTTTCCTTTTGGAAAAAGGCTTATGCACTCATTGACTTCTAAGCTTCATAATTTGAATGAAGTGATTGATTGTACTTTTGACTGTAAGCAAGAGGTTACTCTCCTTTTGAATGTGATGAGGAGAGTCGTTAATGATGGTGGGTAGGTTGGGCCTTCTCAGTAATTTTTTTAAGCCAAAGGGAGGAGCAGTTGTTGTGTTTGGTTTTGTTTGTTGTTGGTTTGGGTTGTTTAATCTTTGGTTTGGTATCTTGAACTTCTGCCAGTGGTTCTTTTTGTTGATGAACTATTGTTGGTTTGTCTTCTTTGTTGATGTAAACATTATCTTATAGGAACTCTATTTGAATACTATTAGGTTTTCCTCTCTTCAGGTATTCTATAGTTGAATGGTTGAGTGTGAAAGTGTTATGTTTGATTCTATCTTGAAAAAATATATTTTAGCCAATGAGGGAGTTTGTTAAGTTTGTGATGTTGCTTACATATATTTGTTAGTGGTTCTTTTTGTTGATGAATTGTTGTTGGCTACATATATTTGTTTGTTAAGTTTGTGATGTTCCTGCAAATACCAAAGAGTTATGTCCCTCAATAAAGGAGCTTGTGTAAAAACTCACAGGGGGAATGAAGAAATCCTAGCCTAAGACTGGTTAACTTACTTCAGTTGATCTAAGTGCTAAATATGCAATTCTCTTCATAATTGTAATTGCAAATTTGTGCCCTTCATCACATCACTCTGGACTCTCTATTTCCTTGGAAAATCTTTATATTAGATAAGGAAGTCAACTTTGTTTGACTATGGAGTCTTTGTCACTAATCTACTGAAGCGCCATATTGGGTCTCATACTCTCATATTGCCCATTGTTTATCTCCGTCTGATTTATGGCATCTTGTTGTCTTAAAAAATGATTTACTTACTTAGATGAACAAGTTGGGGCTAATCCTGACTTACTAAACTTAATTACAAGCTCTTTCAAGGTCACATGTACTTGATATTGCCCCTCCATCTCCCTCTAAACATGAAGATGCTCCAAGTGCTTAGTTAGTAAATTCTCCTTTTAGCAAAAGGCTTATGCATTCCTTGACTGCTAGCTTCATACTCTGA

mRNA sequence

ATGGTAAACACCAGAGAAAAAGCTTATCAACCTGAATCTAAGATGGTGAGATTTAAGGAAAAGGCTAATCATGTTCTGGTAACCACTACAAATACATTTGACTGCCTCTCACTTGTGCAAGCTCCTTTGACTCGTGCCTCCTCTCATGCTCGAGAGAAGAAGGATACTTCCTCCTTTGTTCCTTCAATTTCCCATGATGGTATCTCGATTCACTCGGAGGAAAGTACAATTTTATGGAAGTATGTTGTGAATAGGACAACTTTTGTTGAAAAAGAGCTTCCATACTATCCAAAGTTGGTTAAAAAATTCATTGTGAATCTTTCTCCATCCTTTAATAATGTCAATTCTCCCCAGTTCTGCCGTCATCATGTGCCTGATATTGCCCCTCCATCTCCCTTTAAACATGAAGATACTCCAAGTGCTCAGTTAGTAAATTTTCCTTTTGGAAAAAGGCTTATGCACTCATTGACTTCTAAGCTTCATAATTTGAATGAAGTGATTGATTGTACTTTTGACTGTAAGCAAGAGATAAGGAAGTCAACTTTGTTTGACTATGGAGTCTTTGTCACTAATCTACTGAAGCGCCATATTGGGTCTCATACTCTCATATTGCCCATTGTTTATCTCCGTCTGATTTATGGCATCTTGTCACATGTACTTGATATTGCCCCTCCATCTCCCTCTAAACATGAAGATGCTCCAAGTGCTTACAAAAGGCTTATGCATTCCTTGACTGCTAGCTTCATACTCTGA

Coding sequence (CDS)

ATGGTAAACACCAGAGAAAAAGCTTATCAACCTGAATCTAAGATGGTGAGATTTAAGGAAAAGGCTAATCATGTTCTGGTAACCACTACAAATACATTTGACTGCCTCTCACTTGTGCAAGCTCCTTTGACTCGTGCCTCCTCTCATGCTCGAGAGAAGAAGGATACTTCCTCCTTTGTTCCTTCAATTTCCCATGATGGTATCTCGATTCACTCGGAGGAAAGTACAATTTTATGGAAGTATGTTGTGAATAGGACAACTTTTGTTGAAAAAGAGCTTCCATACTATCCAAAGTTGGTTAAAAAATTCATTGTGAATCTTTCTCCATCCTTTAATAATGTCAATTCTCCCCAGTTCTGCCGTCATCATGTGCCTGATATTGCCCCTCCATCTCCCTTTAAACATGAAGATACTCCAAGTGCTCAGTTAGTAAATTTTCCTTTTGGAAAAAGGCTTATGCACTCATTGACTTCTAAGCTTCATAATTTGAATGAAGTGATTGATTGTACTTTTGACTGTAAGCAAGAGATAAGGAAGTCAACTTTGTTTGACTATGGAGTCTTTGTCACTAATCTACTGAAGCGCCATATTGGGTCTCATACTCTCATATTGCCCATTGTTTATCTCCGTCTGATTTATGGCATCTTGTCACATGTACTTGATATTGCCCCTCCATCTCCCTCTAAACATGAAGATGCTCCAAGTGCTTACAAAAGGCTTATGCATTCCTTGACTGCTAGCTTCATACTCTGA

Protein sequence

MVNTREKAYQPESKMVRFKEKANHVLVTTTNTFDCLSLVQAPLTRASSHAREKKDTSSFVPSISHDGISIHSEESTILWKYVVNRTTFVEKELPYYPKLVKKFIVNLSPSFNNVNSPQFCRHHVPDIAPPSPFKHEDTPSAQLVNFPFGKRLMHSLTSKLHNLNEVIDCTFDCKQEIRKSTLFDYGVFVTNLLKRHIGSHTLILPIVYLRLIYGILSHVLDIAPPSPSKHEDAPSAYKRLMHSLTASFIL
Homology
[Close]
BLAST of ClCG03G012140 vs. NCBI nr
Match: gi|659109367|ref|XP_008454678.1| (PREDICTED: uncharacterized protein LOC103495034 [Cucumis melo])

HSP 1 Score: 62.0 bits (149), Expect = 1.7e-06
Identity = 52/188 (27.66%), Postives = 85/188 (45.21%), Query Frame = 1 

Query: 53  KKDTSSFVPSISHDGISIHSEESTILWKYVVNRTTFVEKELPYYPKLVKKFIVNLSPSFN 112
           +K   + VPS+  D IS H EES   WK+V+ R    E        L+++FIVNL   FN
Sbjct: 193 RKKIPANVPSVPIDEISFHHEESVQCWKFVMQRRITDE--------LIREFIVNLPDEFN 252

Query: 113 NVNSPQFCRHHVPD----IAPP------SPFKHEDTPSAQL-VNFPFGKRLMHSLTSKLH 172
           +++S  +   H+ +    I+P       S +     P+A L + +    ++  +      
Sbjct: 253 DLSSANYQTVHIKEFKFVISPAVINGTLSTWPVNGIPAAALRIKYVILHKIGIANWFPSS 312

Query: 173 NLNEVIDCTFDCKQEIRKSTLFDYGVFVTNLLKRHIGSHTLILPIVYLRLI--YGILSHV 228
           + + +         +I      D G F+ N L RH+GS  + +PI +LRL   +G +  V
Sbjct: 313 HASSISAALGTFLYQIFNDDKVDAGSFICNQLLRHVGSFGVKVPIAFLRLFSSHGAVLTV 372

The following BLAST results are available for this feature:
BLAST of ClCG03G012140 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659109367|ref|XP_008454678.1|1.7e-0627.66PREDICTED: uncharacterized protein LOC103495034 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG03G012140.1ClCG03G012140.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG03G012140Silver-seed gourdcarwcgB0520
ClCG03G012140Silver-seed gourdcarwcgB0944
ClCG03G012140Silver-seed gourdcarwcgB0946
ClCG03G012140Cucumber (Chinese Long) v3cucwcgB046
ClCG03G012140Cucumber (Chinese Long) v3cucwcgB050
ClCG03G012140Watermelon (97103) v2wcgwmbB186
ClCG03G012140Wax gourdwcgwgoB362
ClCG03G012140Wax gourdwcgwgoB370
ClCG03G012140Cucumber (Gy14) v1cgywcgB606
ClCG03G012140Cucumber (Gy14) v1cgywcgB607
ClCG03G012140Cucurbita maxima (Rimu)cmawcgB054
ClCG03G012140Cucurbita maxima (Rimu)cmawcgB062
ClCG03G012140Cucurbita maxima (Rimu)cmawcgB112
ClCG03G012140Cucurbita maxima (Rimu)cmawcgB113
ClCG03G012140Cucurbita moschata (Rifu)cmowcgB045
ClCG03G012140Cucurbita moschata (Rifu)cmowcgB054
ClCG03G012140Cucurbita moschata (Rifu)cmowcgB099
ClCG03G012140Cucurbita moschata (Rifu)cmowcgB101
ClCG03G012140Wild cucumber (PI 183967)cpiwcgB046
ClCG03G012140Wild cucumber (PI 183967)cpiwcgB049
ClCG03G012140Cucumber (Chinese Long) v2cuwcgB043
ClCG03G012140Cucumber (Chinese Long) v2cuwcgB046
ClCG03G012140Melon (DHL92) v3.5.1mewcgB245
ClCG03G012140Melon (DHL92) v3.5.1mewcgB241
ClCG03G012140Watermelon (97103) v1wcgwmB226
ClCG03G012140Cucurbita pepo (Zucchini)cpewcgB014
ClCG03G012140Cucurbita pepo (Zucchini)cpewcgB324
ClCG03G012140Cucurbita pepo (Zucchini)cpewcgB327
ClCG03G012140Cucurbita pepo (Zucchini)cpewcgB606
ClCG03G012140Bottle gourd (USVL1VR-Ls)lsiwcgB364
ClCG03G012140Cucumber (Gy14) v2cgybwcgB041
ClCG03G012140Cucumber (Gy14) v2cgybwcgB043
ClCG03G012140Melon (DHL92) v3.6.1medwcgB232