ClCG03G012120.1 (mRNA) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG03G012120.1
Type	mRNA
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Aminoacylase like protein
Location	CG_Chr03 : 24288372 .. 24288720 (-)
Sequence length	270

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACTCTATCCCTATCGAGGCTTCTAAGTGGCTTTATCCTCCATTCATAGCCAACCAGACCTCCAATGGCAGAACCTTTGCTCATGGTTCTCAAGATGACTTGTGCATGTTCGTACGATTTGGGGGTATCTTGAAGCCACCTGGCACCTCAGAAATCGAAATTTTGTCCATGTTCGTACGATTCACATCTTGTATGTACCGAATGAGGAGATTGTGGATTTCTTATGGCTAGAGGAAAAAGGAAATTGAAATTAACGGCAATACTGACAGACATCGATGACAGCAGCGGCGGAAAACGACGGCAACACCGAGACTTCACGACGACGTTGAGGATGGAGGTCAGTTAA

mRNA sequence

ATGGACTCTATCCCTATCGAGGCTTCTAAGTGGCTTTATCCTCCATTCATAGCCAACCAGACCTCCAATGGCAGAACCTTTGCTCATGGTTCTCAAGATGACTTGTGCATGTTCGTACGATTTGGGGGTATCTTGAAGCCACCTGGCACCTCAGAAATCGAAATTTTGTCCATGTTCGTACGATTCACATCTTACATCGATGACAGCAGCGGCGGAAAACGACGGCAACACCGAGACTTCACGACGACGTTGAGGATGGAGGTCAGTTAA

Coding sequence (CDS)

ATGGACTCTATCCCTATCGAGGCTTCTAAGTGGCTTTATCCTCCATTCATAGCCAACCAGACCTCCAATGGCAGAACCTTTGCTCATGGTTCTCAAGATGACTTGTGCATGTTCGTACGATTTGGGGGTATCTTGAAGCCACCTGGCACCTCAGAAATCGAAATTTTGTCCATGTTCGTACGATTCACATCTTACATCGATGACAGCAGCGGCGGAAAACGACGGCAACACCGAGACTTCACGACGACGTTGAGGATGGAGGTCAGTTAA

Protein sequence

MDSIPIEASKWLYPPFIANQTSNGRTFAHGSQDDLCMFVRFGGILKPPGTSEIEILSMFVRFTSYIDDSSGGKRRQHRDFTTTLRMEVS

Homology

[Close]

BLAST of ClCG03G012120.1 vs. TrEMBL
Match: A0A0S3RNQ6_PHAAN (Aminoacylase-1 OS=Vigna angularis var. angularis GN=Vigan.03G200700 PE=3 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 4.7e-06
Identity = 23/41 (56.10%), Postives = 34/41 (82.93%), Query Frame = 1


Query: 1   MDSIPIEASKWLYPPFIANQTSNGRTFAHGSQDDLCMFVRF 42
           +DS+P E SKWL+PPF A++TS+G+ FA G+QDD C+ V++
Sbjct: 115 LDSVPAEPSKWLHPPFSAHRTSDGKIFARGAQDDKCIAVQY 155

[Close]

BLAST of ClCG03G012120.1 vs. TrEMBL
Match: A0A0L9V056_PHAAN (Aminoacylase-1 OS=Phaseolus angularis GN=LR48_Vigan07g216900 PE=3 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 4.7e-06
Identity = 23/41 (56.10%), Postives = 34/41 (82.93%), Query Frame = 1


Query: 1   MDSIPIEASKWLYPPFIANQTSNGRTFAHGSQDDLCMFVRF 42
           +DS+P E SKWL+PPF A++TS+G+ FA G+QDD C+ V++
Sbjct: 113 LDSVPAEPSKWLHPPFSAHRTSDGKIFARGAQDDKCIAVQY 153

[Close]

BLAST of ClCG03G012120.1 vs. TrEMBL
Match: A0A0A0LRI1_CUCSA (Aminoacylase-1 OS=Cucumis sativus GN=Csa_1G005600 PE=3 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 8.0e-06
Identity = 23/41 (56.10%), Postives = 33/41 (80.49%), Query Frame = 1


Query: 1   MDSIPIEASKWLYPPFIANQTSNGRTFAHGSQDDLCMFVRF 42
           MDS+P E SKW++PPF A +TS+G+ FA GSQDD C+ +++
Sbjct: 112 MDSVPAEPSKWVHPPFSAVRTSDGKIFARGSQDDKCIAIQY 152

[Close]

BLAST of ClCG03G012120.1 vs. TAIR10
Match: AT1G44820.1 (AT1G44820.1 Peptidase M20/M25/M40 family protein)

HSP 1 Score: 53.1 bits (126), Expect = 9.9e-08
Identity = 20/41 (48.78%), Postives = 29/41 (70.73%), Query Frame = 1


Query: 1   MDSIPIEASKWLYPPFIANQTSNGRTFAHGSQDDLCMFVRF 42
           +DS+P E+ KW YPPF A++T +G  +A G+QDD C+ V++
Sbjct: 98  LDSVPAESEKWTYPPFSAHKTIDGHIYARGAQDDKCIGVQY 138

[Close]

BLAST of ClCG03G012120.1 vs. TAIR10
Match: AT1G44180.1 (AT1G44180.1 Peptidase M20/M25/M40 family protein)

HSP 1 Score: 52.4 bits (124), Expect = 1.7e-07
Identity = 19/41 (46.34%), Postives = 30/41 (73.17%), Query Frame = 1


Query: 1   MDSIPIEASKWLYPPFIANQTSNGRTFAHGSQDDLCMFVRF 42
           +DS+P E+ KW++PPF A++T +G  +A G+QDD C+ V++
Sbjct: 100 LDSVPAESEKWIHPPFSAHRTIDGHIYARGAQDDKCIGVQY 140

[Close]

BLAST of ClCG03G012120.1 vs. NCBI nr
Match: gi|965666575|dbj|BAT82063.1| (hypothetical protein VIGAN_03200700 [Vigna angularis var. angularis])

HSP 1 Score: 58.5 bits (140), Expect = 6.7e-06
Identity = 23/41 (56.10%), Postives = 34/41 (82.93%), Query Frame = 1


Query: 1   MDSIPIEASKWLYPPFIANQTSNGRTFAHGSQDDLCMFVRF 42
           +DS+P E SKWL+PPF A++TS+G+ FA G+QDD C+ V++
Sbjct: 115 LDSVPAEPSKWLHPPFSAHRTSDGKIFARGAQDDKCIAVQY 155

[Close]

BLAST of ClCG03G012120.1 vs. NCBI nr
Match: gi|920705240|gb|KOM48465.1| (hypothetical protein LR48_Vigan07g216900 [Vigna angularis])

HSP 1 Score: 58.5 bits (140), Expect = 6.7e-06
Identity = 23/41 (56.10%), Postives = 34/41 (82.93%), Query Frame = 1


Query: 1   MDSIPIEASKWLYPPFIANQTSNGRTFAHGSQDDLCMFVRF 42
           +DS+P E SKWL+PPF A++TS+G+ FA G+QDD C+ V++
Sbjct: 113 LDSVPAEPSKWLHPPFSAHRTSDGKIFARGAQDDKCIAVQY 153

The following BLAST results are available for this feature:

BLAST of ClCG03G012120.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0S3RNQ6_PHAAN	4.7e-06	56.10	Aminoacylase-1 OS=Vigna angularis var. angularis GN=Vigan.03G200700 PE=3 SV=1	[more]
A0A0L9V056_PHAAN	4.7e-06	56.10	Aminoacylase-1 OS=Phaseolus angularis GN=LR48_Vigan07g216900 PE=3 SV=1	[more]
A0A0A0LRI1_CUCSA	8.0e-06	56.10	Aminoacylase-1 OS=Cucumis sativus GN=Csa_1G005600 PE=3 SV=1	[more]

BLAST of ClCG03G012120.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G44820.1	9.9e-08	48.78	Peptidase M20/M25/M40 family protein	[more]
AT1G44180.1	1.7e-07	46.34	Peptidase M20/M25/M40 family protein	[more]

BLAST of ClCG03G012120.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|965666575\|dbj\|BAT82063.1\|	6.7e-06	56.10	hypothetical protein VIGAN_03200700 [Vigna angularis var. angularis]	[more]
gi\|920705240\|gb\|KOM48465.1\|	6.7e-06	56.10	hypothetical protein LR48_Vigan07g216900 [Vigna angularis]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006520	cellular amino acid metabolic process
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0004046	aminoacylase activity
molecular_function	GO:0046872	metal ion binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
ClCG03G012120	ClCG03G012120	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
ClCG03G012120.1	ClCG03G012120.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG03G012120.1.cds2	ClCG03G012120.1.cds2	CDS
ClCG03G012120.1.cds1	ClCG03G012120.1.cds1	CDS

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:3.40.630.10		coord: 1..38 score: 6.