ClCG02G012110.1 (mRNA) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG02G012110.1
Type	mRNA
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Unknown protein
Location	CG_Chr02 : 25416713 .. 25417072 (+)
Sequence length	360

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAACCCTCTTCTTCTCCCACTTTCCTCTCTAATTCCAACCCTCCTCTTAGCTCCTCCGAATCAGAATTCTCCGACATCGAAATGACCCCTCTTCAATCCTACACCAGCCTCAAAGACCTCCTCCCGGACTCCCCCTCGCCGCCCCCCTCCACCGTCGCCGCCCCCCTCCACTGCCCCGCCTGGGACGAACTCCCCATCAAAAACCCACTTGTCAAACACGCCGCCTTGGCCTACCTTCAGCCCATGCTCACGCCGCCCGTCGCCGGCGATCGTACCTTCATGCGCAGGCTCAAGAAGCACGGTTTCGGATGCATCGAGTGGCTCGCTGCTGTCGTCGCTGGAGTCCGCCGGTGGTAG

mRNA sequence

ATGGAACCCTCTTCTTCTCCCACTTTCCTCTCTAATTCCAACCCTCCTCTTAGCTCCTCCGAATCAGAATTCTCCGACATCGAAATGACCCCTCTTCAATCCTACACCAGCCTCAAAGACCTCCTCCCGGACTCCCCCTCGCCGCCCCCCTCCACCGTCGCCGCCCCCCTCCACTGCCCCGCCTGGGACGAACTCCCCATCAAAAACCCACTTGTCAAACACGCCGCCTTGGCCTACCTTCAGCCCATGCTCACGCCGCCCGTCGCCGGCGATCGTACCTTCATGCGCAGGCTCAAGAAGCACGGTTTCGGATGCATCGAGTGGCTCGCTGCTGTCGTCGCTGGAGTCCGCCGGTGGTAG

Coding sequence (CDS)

ATGGAACCCTCTTCTTCTCCCACTTTCCTCTCTAATTCCAACCCTCCTCTTAGCTCCTCCGAATCAGAATTCTCCGACATCGAAATGACCCCTCTTCAATCCTACACCAGCCTCAAAGACCTCCTCCCGGACTCCCCCTCGCCGCCCCCCTCCACCGTCGCCGCCCCCCTCCACTGCCCCGCCTGGGACGAACTCCCCATCAAAAACCCACTTGTCAAACACGCCGCCTTGGCCTACCTTCAGCCCATGCTCACGCCGCCCGTCGCCGGCGATCGTACCTTCATGCGCAGGCTCAAGAAGCACGGTTTCGGATGCATCGAGTGGCTCGCTGCTGTCGTCGCTGGAGTCCGCCGGTGGTAG

Protein sequence

MEPSSSPTFLSNSNPPLSSSESEFSDIEMTPLQSYTSLKDLLPDSPSPPPSTVAAPLHCPAWDELPIKNPLVKHAALAYLQPMLTPPVAGDRTFMRRLKKHGFGCIEWLAAVVAGVRRW

Homology

[Close]

BLAST of ClCG02G012110.1 vs. TrEMBL
Match: A0A0A0LPR9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G271440 PE=4 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 7.3e-39
Identity = 88/117 (75.21%), Postives = 93/117 (79.49%), Query Frame = 1


Query: 3   PSSSPTFLSNSNPPLSSSESEFSD-IEMTPLQSYTSLKDLLPDSPSPPPSTVAAPLHCPA 62
           PS SPT   + N PLSS E EFSD IEMTPLQSYTSLKDLLPDSPSPPPS  +     PA
Sbjct: 9   PSPSPTSFLSPNHPLSSPELEFSDDIEMTPLQSYTSLKDLLPDSPSPPPSATS-----PA 68

Query: 63  WDELPIKNPLVKHAALAYLQPMLTPPVAGDRTFMRRLKKHGFGCIEWLAAVVAGVRR 119
           +D+LPIKNPLVKHAALAYLQPMLTPP     TF+R LKKHGFGCIEWLAAVV  VRR
Sbjct: 69  FDQLPIKNPLVKHAALAYLQPMLTPPTTSHPTFLRILKKHGFGCIEWLAAVVHEVRR 120

[Close]

BLAST of ClCG02G012110.1 vs. TrEMBL
Match: M5VHF3_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa022032mg PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 2.6e-20
Identity = 64/124 (51.61%), Postives = 77/124 (62.10%), Query Frame = 1


Query: 4   SSSPTFLSNSNPPLSSSESEFSDIEMTPLQS--YTSLKDLLPDSPSPPPSTVAAPLHCPA 63
           S SP+FL     P    E E SDIEM  +Q+  YTSLKDLLP SP     T+ +P    +
Sbjct: 19  SHSPSFLL----PNGFGEIEISDIEMITIQTVTYTSLKDLLPASPP----TIMSPTQNSS 78

Query: 64  WDELPIKNPLVKHAALAYLQPMLTPPVAGDRTFMRRLKK-------HGFGCIEWLAAVV- 118
           W E+PIKNPLVKHAALAYLQPM TPP  GD+  +R L++       +G GC  WL  VV 
Sbjct: 79  WHEIPIKNPLVKHAALAYLQPMSTPPEVGDKGLLRMLREKCLCEGTNGVGCFSWLGDVVL 134

[Close]

BLAST of ClCG02G012110.1 vs. TrEMBL
Match: A0A061DXS2_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_006565 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 7.1e-18
Identity = 57/115 (49.57%), Postives = 71/115 (61.74%), Query Frame = 1


Query: 4   SSSPTFLSNSNPPLSSSESEFSDIEMTPLQS--YTSLKDLLPDSPSPPPSTVAAPLHCPA 63
           S S TFL ++        S+ SDIEM  +QS  YTSLKDLLP SP      + +P H  +
Sbjct: 26  SHSSTFLLHNG----FGSSQISDIEMITIQSVSYTSLKDLLPTSPP----AITSPTHNSS 85

Query: 64  WDELPIKNPLVKHAALAYLQPMLTPPVAGDRTFMRRLKKH---GFGCIEWLAAVV 114
           W E+PIKNPLVKHAALAYLQPM +PP  G++    RLK+      GC+ WL  V+
Sbjct: 86  WHEIPIKNPLVKHAALAYLQPMSSPPEVGEKGLFGRLKERCCGECGCVLWLHDVI 132

[Close]

BLAST of ClCG02G012110.1 vs. TrEMBL
Match: A0A0D2VZV0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_012G156800 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 1.8e-16
Identity = 49/97 (50.52%), Postives = 67/97 (69.07%), Query Frame = 1


Query: 20  SESEFSDIEMTPLQSYTSLKDLLPDSPSPPPSTVAAPLHCPAWDELPIKNPLVKHAALAY 79
           S S+FSD+EM  + SYTSLK+LLP S     S   + +H  +W+E+PIKNPLVK AALAY
Sbjct: 110 SSSQFSDVEM--MTSYTSLKELLPASSPTNISPTTSTVHNSSWNEIPIKNPLVKQAALAY 169

Query: 80  LQPMLTPPVAGDRTFMRRLKK---HGFGCIEWLAAVV 114
           LQPM + P AG++ F+ R+K+   +  GC+ W+  VV
Sbjct: 170 LQPMESLPPAGEKGFLERVKENCSNECGCVSWMFDVV 204

[Close]

BLAST of ClCG02G012110.1 vs. TrEMBL
Match: B9S5I6_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0976830 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 1.6e-14
Identity = 54/113 (47.79%), Postives = 70/113 (61.95%), Query Frame = 1


Query: 9   FLSNSNPPLSSSES-EFSDIEMTPLQS--YTSLKDLLPDSPSPPPSTVAAPLHCPAWDEL 68
           F++N+ P L+     + SD+E   ++S  YTSLKDLLP SP    ST     H  +W+E+
Sbjct: 28  FINNNIPSLNHHHQYQISDMERISVKSATYTSLKDLLPVSPLSITSTS----HNASWNEI 87

Query: 69  PIKNPLVKHAALAYLQPMLTPPVAGDR-TFMRRLKK----HGFGCIEWLAAVV 114
           PIKNPLVK AALAYLQPM TPP+AG +  F+RRL+        GC  W   +V
Sbjct: 88  PIKNPLVKQAALAYLQPMSTPPIAGGKGLFLRRLRDLICCRECGCFGWFNDLV 136

[Close]

BLAST of ClCG02G012110.1 vs. TAIR10
Match: AT3G52520.1 (AT3G52520.1 unknown protein)

HSP 1 Score: 47.4 bits (111), Expect = 7.3e-06
Identity = 29/70 (41.43%), Postives = 39/70 (55.71%), Query Frame = 1


Query: 31  PLQSYTSLKDLLPDSPSP--PPSTVAAPLHCPAWDELPIKNPLVKHAALAYLQPMLTPPV 90
           PL  YTSLKD+LP S +    P+   A     +   + I+N LVK AA +YLQP  TP  
Sbjct: 37  PLPCYTSLKDILPSSSTTVDSPAISFAVASAVSGPTITIRNRLVKQAACSYLQPS-TPTP 96

Query: 91  AGDRTFMRRL 99
           + + +F+RR+
Sbjct: 97  SSNPSFLRRV 105

[Close]

BLAST of ClCG02G012110.1 vs. NCBI nr
Match: gi|659115776|ref|XP_008457731.1| (PREDICTED: uncharacterized protein LOC103497353 [Cucumis melo])

HSP 1 Score: 172.2 bits (435), Expect = 5.6e-40
Identity = 89/117 (76.07%), Postives = 94/117 (80.34%), Query Frame = 1


Query: 3   PSSSPTFLSNSNPPLSSSESEFSD-IEMTPLQSYTSLKDLLPDSPSPPPSTVAAPLHCPA 62
           PS SPTF  + N PLSS E +FSD IEMTPLQSYTSLKDLLPDSPSPPPS  +     PA
Sbjct: 7   PSPSPTFFLSPNHPLSSPELQFSDDIEMTPLQSYTSLKDLLPDSPSPPPSATS-----PA 66

Query: 63  WDELPIKNPLVKHAALAYLQPMLTPPVAGDRTFMRRLKKHGFGCIEWLAAVVAGVRR 119
           +DELPIKNPLVKHAALAYLQPMLTPP     TF+R LKKHGFGCIEWLAAVV  VRR
Sbjct: 67  FDELPIKNPLVKHAALAYLQPMLTPPTTAHPTFLRNLKKHGFGCIEWLAAVVDEVRR 118

[Close]

BLAST of ClCG02G012110.1 vs. NCBI nr
Match: gi|700206832|gb|KGN61951.1| (hypothetical protein Csa_2G271440 [Cucumis sativus])

HSP 1 Score: 167.9 bits (424), Expect = 1.0e-38
Identity = 88/117 (75.21%), Postives = 93/117 (79.49%), Query Frame = 1


Query: 3   PSSSPTFLSNSNPPLSSSESEFSD-IEMTPLQSYTSLKDLLPDSPSPPPSTVAAPLHCPA 62
           PS SPT   + N PLSS E EFSD IEMTPLQSYTSLKDLLPDSPSPPPS  +     PA
Sbjct: 9   PSPSPTSFLSPNHPLSSPELEFSDDIEMTPLQSYTSLKDLLPDSPSPPPSATS-----PA 68

Query: 63  WDELPIKNPLVKHAALAYLQPMLTPPVAGDRTFMRRLKKHGFGCIEWLAAVVAGVRR 119
           +D+LPIKNPLVKHAALAYLQPMLTPP     TF+R LKKHGFGCIEWLAAVV  VRR
Sbjct: 69  FDQLPIKNPLVKHAALAYLQPMLTPPTTSHPTFLRILKKHGFGCIEWLAAVVHEVRR 120

[Close]

BLAST of ClCG02G012110.1 vs. NCBI nr
Match: gi|1009150879|ref|XP_015893260.1| (PREDICTED: zinc-regulated protein 8-like [Ziziphus jujuba])

HSP 1 Score: 108.6 bits (270), Expect = 7.6e-21
Identity = 65/120 (54.17%), Postives = 76/120 (63.33%), Query Frame = 1


Query: 4   SSSPTFLSNSNPPLSSSESEFSDIEMTPLQS--YTSLKDLLPDSPSPPPSTVAAPLHCPA 63
           S SPTFL +    L S E + SDIEM  +QS  YTSLKDLLP  PSPPP+ + +P H  +
Sbjct: 25  SHSPTFLFHDGG-LDSPEFKVSDIEMITIQSLTYTSLKDLLP--PSPPPA-IMSPTHNSS 84

Query: 64  WDELPIKNPLVKHAALAYLQPMLTPPVAGDRTFMRRLKKH--------GFGCIEWLAAVV 114
           W E+PI+NPLVKHAALAYLQPM TP  A D+    +LK          GFGC  WL  VV
Sbjct: 85  WHEIPIRNPLVKHAALAYLQPMSTPTEADDKGLFGKLKDKCLCGAAGGGFGCFGWLGDVV 140

[Close]

BLAST of ClCG02G012110.1 vs. NCBI nr
Match: gi|595790959|ref|XP_007199228.1| (hypothetical protein PRUPE_ppa022032mg, partial [Prunus persica])

HSP 1 Score: 106.3 bits (264), Expect = 3.7e-20
Identity = 64/124 (51.61%), Postives = 77/124 (62.10%), Query Frame = 1


Query: 4   SSSPTFLSNSNPPLSSSESEFSDIEMTPLQS--YTSLKDLLPDSPSPPPSTVAAPLHCPA 63
           S SP+FL     P    E E SDIEM  +Q+  YTSLKDLLP SP     T+ +P    +
Sbjct: 19  SHSPSFLL----PNGFGEIEISDIEMITIQTVTYTSLKDLLPASPP----TIMSPTQNSS 78

Query: 64  WDELPIKNPLVKHAALAYLQPMLTPPVAGDRTFMRRLKK-------HGFGCIEWLAAVV- 118
           W E+PIKNPLVKHAALAYLQPM TPP  GD+  +R L++       +G GC  WL  VV 
Sbjct: 79  WHEIPIKNPLVKHAALAYLQPMSTPPEVGDKGLLRMLREKCLCEGTNGVGCFSWLGDVVL 134

[Close]

BLAST of ClCG02G012110.1 vs. NCBI nr
Match: gi|645260966|ref|XP_008236068.1| (PREDICTED: uncharacterized protein LOC103334865 [Prunus mume])

HSP 1 Score: 105.1 bits (261), Expect = 8.4e-20
Identity = 63/124 (50.81%), Postives = 77/124 (62.10%), Query Frame = 1


Query: 4   SSSPTFLSNSNPPLSSSESEFSDIEMTPLQS--YTSLKDLLPDSPSPPPSTVAAPLHCPA 63
           S SP+FL     P    E E SDIEM  +Q+  YTSL+DLLP SP     T+ +P    +
Sbjct: 19  SHSPSFLL----PNGFGEIEISDIEMITIQTVTYTSLRDLLPASPP----TIMSPTQNSS 78

Query: 64  WDELPIKNPLVKHAALAYLQPMLTPPVAGDRTFMRRLK-------KHGFGCIEWLAAVV- 118
           W E+PIKNPLVKHAALAYLQPM TPP  GD+  +R L+       ++G GC  WL  VV 
Sbjct: 79  WHEIPIKNPLVKHAALAYLQPMSTPPEVGDKGLLRMLREKCLCGGENGLGCFAWLGDVVL 134

The following BLAST results are available for this feature:

BLAST of ClCG02G012110.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LPR9_CUCSA	7.3e-39	75.21	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G271440 PE=4 SV=1	[more]
M5VHF3_PRUPE	2.6e-20	51.61	Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa022032mg PE=4 S...	[more]
A0A061DXS2_THECC	7.1e-18	49.57	Uncharacterized protein OS=Theobroma cacao GN=TCM_006565 PE=4 SV=1	[more]
A0A0D2VZV0_GOSRA	1.8e-16	50.52	Uncharacterized protein OS=Gossypium raimondii GN=B456_012G156800 PE=4 SV=1	[more]
B9S5I6_RICCO	1.6e-14	47.79	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0976830 PE=4 SV=1	[more]

BLAST of ClCG02G012110.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G52520.1	7.3e-06	41.43	unknown protein	[more]

BLAST of ClCG02G012110.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659115776\|ref\|XP_008457731.1\|	5.6e-40	76.07	PREDICTED: uncharacterized protein LOC103497353 [Cucumis melo]	[more]
gi\|700206832\|gb\|KGN61951.1\|	1.0e-38	75.21	hypothetical protein Csa_2G271440 [Cucumis sativus]	[more]
gi\|1009150879\|ref\|XP_015893260.1\|	7.6e-21	54.17	PREDICTED: zinc-regulated protein 8-like [Ziziphus jujuba]	[more]
gi\|595790959\|ref\|XP_007199228.1\|	3.7e-20	51.61	hypothetical protein PRUPE_ppa022032mg, partial [Prunus persica]	[more]
gi\|645260966\|ref\|XP_008236068.1\|	8.4e-20	50.81	PREDICTED: uncharacterized protein LOC103334865 [Prunus mume]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
ClCG02G012110	ClCG02G012110	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
ClCG02G012110.1	ClCG02G012110.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG02G012110.1.cds1	ClCG02G012110.1.cds1	CDS

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34569	FAMILY NOT NAMED	coord: 17..98 score: 3.7