ClCG02G006510.1 (mRNA) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG02G006510.1
Type	mRNA
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Ribonuclease H-like superfamily protein LENGTH=575
Location	CG_Chr02 : 7483845 .. 7486693 (-)
Sequence length	1128

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTCGCAGATTTCCTTTGAGGATGTTTTTCCTTTTCGGGCATGCGTATTTAATGGCAATATGGAGCTTTGCTAGGGATGTGGAGATTATTGAATGTACTTGAATGTTTTGTTTTTTGGTGAAGCCGAAATTTGGTTCTTTATTATGTTGTGCAAGTTGTTGATAAAACTTTTTTGTGCAAGAAGCAAGTCATAGTCTTAGGGGAGCCTAATATGTCATGACGGGAGAAAGAGCTCTCCAACTTAAGGCGTACTTAAGTTAGATCAGTGAAGGTCATTCATTGAAGGAAAAAAAAAAACTAGGAAGATCACAACAATAGAGAGGAAGTCCCAAACATTGAGGAGAGTTGAAGCGTTCAACACTAATATTAATACACTCTCGCAGATAGGGGAGCTTAGGTGATCTATGAGTTAGACTCAATGGGAGCCACTGTAGTAGTCGCTATATTACAGATAAGTACTACGTTGTAATTGTTTGACTTTTTAATATTAGTGAATTATCTTTCATGGGCATACTGTCTAGGGGTTAGGAGTAAGTGGTTATCATCTAATTGGGTTACTAATTTTTGTGCATTTTTTTTTAATCTCTGTTATAATGCGTGCGTATGCTTTCTGTTTGACATCTGTGTTCTGAGTTATGTGTCATCTATTTGTTCAATTGTATATATAGCAAATTTGTGTTGTTTTGCAGATCCTTTTCTTAAAAAAAAAATTCAACTTTTCTTTTAACAGATCTTTTGTCTTTTGAAATACGAGAAAGAAATAATATTAAAAGTAAATAAATCTTTTAGCATCCTCATCTTCTAAAAATAAAAAGAAAAAAAGAAAAAGCATGGATTGTATTTAATTCAACTTATATGCATGATTGACAATAAGTATACAAATTATATTCTACCAACCAAAATAATCATGAACCAATCAAGTTTAAAAGTCTCTATTTAATATATATTATAAAATAAGTTATTTATGTGGAGATCAATGGCTATGGCGATTGATGAAGATCAACCAAACTAGTATGGAATTTTAATTTTCATTGATTACACACAATACATGTTCAGAAATAAGATTAGATAATATCAAAATAGGAATTAGTATAAAAATATCAAGTAAGGATTTGAGAAGAGACGAAAAACGGAAACATTGGGAGGTCAAAAACAATAAATAAAAATTAATTATCACATGTGTGTTTGGTCCTAAGTTTTCAAAACATACCATTATTTTAGTCTTAAGGTTTCAAAAATAAATTTAAAAGGTCATTACAATGATTTATTATCACCTTCCGCTTTTAAGGTATATCTTACCAAGTCTCCGTATATTTGTCAAATGCCTTAAAAAATAGGAATAATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAATCTTTTCAACATTTAAACCTTTACTTATACAGATTCCTCATATGAAAGAAAACTATAACACAAACTTTAATCAATTTGAGCTTAAAGGAGGGAAAACACTATGAAATTGGTTGCCTCTGGGAGGCAATCCTAAGCAGAGTGGTTTTTGGGATCCCATCATTAAGCGTATAGATAAAAAGCTCTCCTCCTGGCAGCTTTCTTTCATCTCCAAAGGTGGCAGACTTACCCTGATTCAGGCGGTCCTGAGTAGTATACCAACATATTTCATGTCTCTCTTCAAGGCTCCGTTGAAAGGCTGATGAGAAACTTCCTTTGGAAAGACTTTGGAAATCAAAATGGCTCTCATCTAGTGAGATGGGATTTTGTCACTCGTCCAAAAGACAAAGGTGGTATCGGCATTGACAAAGTTAGAATTACAAATGAAGCTCTCCTAGGGAAGTGGATTTGGAGATATGTCCCAGAACCCGATCAGTTATGGAGATCCCTTATTGATGGTATATATGCAACCTGCACTCCTGGATCAATTCCCAGCTTGAACAACTTTGGTAGTGCCAGAGCTCCTTGGTATCAAATCAGAAAGATGGAAGATCAAAAGTGGATCAAACATTCTGTTTTGGCACCACAATTGGGATGGAGGAATTGCGAAAAGAATCACCTGTCCAAGATTTTACAACATCTCCGAAAATAAGGTTATCACTGTAAAAGATGCCTGGAACTCCAATCAAAGCAGTTGGAATCCGTCCTTTAGAAGGCCCCTCTTGGACAGAGAGATGCAGGTATGGAAATCACTCTCCTCCGGCTGGCAGACTCCAATTCAAACAGAGGAACCGGACATAATCCTCTGGAACCTGGGCGATAAAGGTTTGTTCACCATTAAATCTTTAAAGCAGTATCTGTCAGCTAGCAGAAATTTGCCCAATCACCCGGATTTAACTCAAGTGTGGGCTTCCTATATCCCAAAAAAGTGTAAGTTTTTTCCTTGGTCACTTTATCATAGGAGCATCAACACCATAGACAAGTGTCAGTCACGTAATCCTTCAATGACCCTCAATCCTAATTGGTGTGTACTTTGTAAAAGAGAAAATAAAACAGTGGAACATCTTTTTATCACTTGCACTTACTCCAGCAGGTTTGGAGGAATTTTTATAACTTTGTCGTCGAATCAGCCGTGTCTCCTTCCTCTATAGCAGAAGCTATTCACTCCTTCTCATCCCTCAAGCACACAACAAAAAGAAGAACTTTGTTGCAAAACTTGATTGGTGCTACCCTCTGGACTGTTTGGCTGGAAAGAAACAACAGGACCTTCCATGATGGCAGCAAATCCCAAAGGCAATTGTGGGAAGATATCCTAAGCCTCTCTTCCCTTTGGTGTAAAAAATCACCTGATTGTAACTATAGCATTGCTAGTATCTCCCTCAATTGGAATGCTTTTCTGTAG

mRNA sequence

ATGGCTCGCAGATTTCCTTTGAGGATGTTTTTCCTTTTCGGGCATGCGTATTTAATGGCAATATGGAGCTTTGCTAGGGATGTGGAGATTATTGAATGCAATCCTAAGCAGAGTGGTTTTTGGGATCCCATCATTAAGCGTATAGATAAAAAGCTCTCCTCCTGGCAGCTTTCTTTCATCTCCAAAGGTGGCAGACTTACCCTGATTCAGGCGGTCCTGAGTAGCTCCGTTGAAAGGCTGATGAGAAACTTCCTTTGGAAAGACTTTGGAAATCAAAATGGCTCTCATCTAGTGAGATGGGATTTTGTCACTCGTCCAAAAGACAAAGGTGGTATCGGCATTGACAAAGTTAGAATTACAAATGAAGCTCTCCTAGGGAAGTGGATTTGGAGATATGTCCCAGAACCCGATCAGTTATGGAGATCCCTTATTGATGGTATATATGCAACCTGCACTCCTGGATCAATTCCCAGCTTGAACAACTTTGGTAGTGCCAGAGCTCCTTGTGGATCAAACATTCTGTTTTGGCACCACAATTGGGATGGAGGAATTGCGAAAAGAATCACCTGTCCAAGATTTTACAACATCTCCGAAAATAAGGTTATCACTGTAAAAGATGCCTGGAACTCCAATCAAAGCAGTTGGAATCCGTCCTTTAGAAGGCCCCTCTTGGACAGAGAGATGCAGACTCCAATTCAAACAGAGGAACCGGACATAATCCTCTGGAACCTGGGCGATAAAGGTTTGTTCACCATTAAATCTTTAAAGCAGTATCTGTCAGCTAGCAGAAATTTGCCCAATCACCCGGATTTAACTCAAGTTTGGAGGAATTTTTATAACTTTGTCGTCGAATCAGCCGTGTCTCCTTCCTCTATAGCAGAAGCTATTCACTCCTTCTCATCCCTCAAGCACACAACAAAAAGAAGAACTTTGTTGCAAAACTTGATTGGTGCTACCCTCTGGACTGTTTGGCTGGAAAGAAACAACAGGACCTTCCATGATGGCAGCAAATCCCAAAGGCAATTGTGGGAAGATATCCTAAGCCTCTCTTCCCTTTGGTGTAAAAAATCACCTGATTGTAACTATAGCATTGCTAGTATCTCCCTCAATTGGAATGCTTTTCTGTAG

Coding sequence (CDS)

ATGGCTCGCAGATTTCCTTTGAGGATGTTTTTCCTTTTCGGGCATGCGTATTTAATGGCAATATGGAGCTTTGCTAGGGATGTGGAGATTATTGAATGCAATCCTAAGCAGAGTGGTTTTTGGGATCCCATCATTAAGCGTATAGATAAAAAGCTCTCCTCCTGGCAGCTTTCTTTCATCTCCAAAGGTGGCAGACTTACCCTGATTCAGGCGGTCCTGAGTAGCTCCGTTGAAAGGCTGATGAGAAACTTCCTTTGGAAAGACTTTGGAAATCAAAATGGCTCTCATCTAGTGAGATGGGATTTTGTCACTCGTCCAAAAGACAAAGGTGGTATCGGCATTGACAAAGTTAGAATTACAAATGAAGCTCTCCTAGGGAAGTGGATTTGGAGATATGTCCCAGAACCCGATCAGTTATGGAGATCCCTTATTGATGGTATATATGCAACCTGCACTCCTGGATCAATTCCCAGCTTGAACAACTTTGGTAGTGCCAGAGCTCCTTGTGGATCAAACATTCTGTTTTGGCACCACAATTGGGATGGAGGAATTGCGAAAAGAATCACCTGTCCAAGATTTTACAACATCTCCGAAAATAAGGTTATCACTGTAAAAGATGCCTGGAACTCCAATCAAAGCAGTTGGAATCCGTCCTTTAGAAGGCCCCTCTTGGACAGAGAGATGCAGACTCCAATTCAAACAGAGGAACCGGACATAATCCTCTGGAACCTGGGCGATAAAGGTTTGTTCACCATTAAATCTTTAAAGCAGTATCTGTCAGCTAGCAGAAATTTGCCCAATCACCCGGATTTAACTCAAGTTTGGAGGAATTTTTATAACTTTGTCGTCGAATCAGCCGTGTCTCCTTCCTCTATAGCAGAAGCTATTCACTCCTTCTCATCCCTCAAGCACACAACAAAAAGAAGAACTTTGTTGCAAAACTTGATTGGTGCTACCCTCTGGACTGTTTGGCTGGAAAGAAACAACAGGACCTTCCATGATGGCAGCAAATCCCAAAGGCAATTGTGGGAAGATATCCTAAGCCTCTCTTCCCTTTGGTGTAAAAAATCACCTGATTGTAACTATAGCATTGCTAGTATCTCCCTCAATTGGAATGCTTTTCTGTAG

Protein sequence

MARRFPLRMFFLFGHAYLMAIWSFARDVEIIECNPKQSGFWDPIIKRIDKKLSSWQLSFISKGGRLTLIQAVLSSSVERLMRNFLWKDFGNQNGSHLVRWDFVTRPKDKGGIGIDKVRITNEALLGKWIWRYVPEPDQLWRSLIDGIYATCTPGSIPSLNNFGSARAPCGSNILFWHHNWDGGIAKRITCPRFYNISENKVITVKDAWNSNQSSWNPSFRRPLLDREMQTPIQTEEPDIILWNLGDKGLFTIKSLKQYLSASRNLPNHPDLTQVWRNFYNFVVESAVSPSSIAEAIHSFSSLKHTTKRRTLLQNLIGATLWTVWLERNNRTFHDGSKSQRQLWEDILSLSSLWCKKSPDCNYSIASISLNWNAFL

Homology

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BLAST of ClCG02G006510.1 vs. Swiss-Prot
Match: RNHX1_ARATH (Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana GN=At1g65750 PE=3 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 8.2e-13
Identity = 40/122 (32.79%), Postives = 60/122 (49.18%), Query Frame = 1


Query: 44  IIKRIDKKLSSWQLSFISKGGRLTLIQAVLSSS-----------------VERLMRNFLW 103
           I++R+  ++S W+   +S  GRLTL +AVLSS                  +++L R FLW
Sbjct: 16  ILERVSSRMSGWREKTLSFAGRLTLTKAVLSSMPVHSMSTILLPQSILNRLDQLSRTFLW 75

Query: 104 KDFGNQNGSHLVRWDFVTRPKDKGGIGIDKVRITNEALLGKWIWRYVPEPDQLWRSLIDG 149
                +   HLV+W  V  PK +GG+G+   +  N AL+ K  WR + E + LW  ++  
Sbjct: 76  GSTAEKKKQHLVKWSKVCSPKKEGGLGVRAAKSMNRALISKVGWRLLQEKNSLWTLVLQK 135

[Close]

BLAST of ClCG02G006510.1 vs. TrEMBL
Match: A5AK27_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_008195 PE=4 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 4.5e-42
Identity = 120/374 (32.09%), Postives = 161/374 (43.05%), Query Frame = 1


Query: 34   NPKQSGFWDPIIKRIDKKLSSWQLSFISKGGRLTLIQAVLS-----------------SS 93
            NPK SGFWDP+I+RI ++L  WQ +++S GGR+TLIQ+ L+                 + 
Sbjct: 1480 NPKASGFWDPVIERISRRLDGWQKAYLSFGGRITLIQSCLTHMPCYFLSLFRIPASVAAK 1539

Query: 94   VERLMRNFLWKDFGNQNGSHLVRWDFVTRPKDKGGIGIDKVRITNEALLGKWIWRYVPEP 153
            +ER+ R FLW   G     HLV WD V +PK +GG+G  K+ + N ALLGKW+WRY  E 
Sbjct: 1540 IERMQREFLWSGVGEGKRDHLVNWDVVCKPKSRGGLGFGKISMRNVALLGKWLWRYPREG 1599

Query: 154  DQLWRSLIDGIYATCTPGSIPSLNNFGSARAPC--------------------GSNILFW 213
              LW  +I  IY + + G   + N   S R P                     G  I FW
Sbjct: 1600 SALWHQVILSIYGSHSNGWDVNNNVRWSHRCPWKAIALVFQEFSKFTRFVVGDGDRIRFW 1659

Query: 214  HHNWDGGIAKRITCPRFYNISENKVITVKDAWN-SNQSSWNPSFRRPLLDREMQ------ 273
               W G        PR  ++  +K   +      S   SWN +FRR L D E++      
Sbjct: 1660 DDLWWGDQPLGTQYPRLLSVVTDKNALISSILGYSRPFSWNFNFRRNLTDSEIEDLESLM 1719

Query: 274  -----TPIQTEEPDIILWNLGDKGLFTIKSLKQYLSASRNLPNHPDLTQVWRNFYNFVVE 333
                   I    PD   W++   GLFT+KS    LS     P       VW +    V  
Sbjct: 1720 RSLDRLHISPSVPDKRSWSISPSGLFTVKSFFLALSQHSESPPVFPTKFVWNSQRGVV-- 1779

Query: 334  SAVSPSSIAEAIHSFSSLKHTTKRRTLLQNLIGATLWTVWLERNNRTFHDGSKSQRQLWE 357
                                      L Q+   A +W VW ERN R F D +++   LW+
Sbjct: 1780 --------------------------LWQDACIALMWVVWRERNARIFEDKARNSGCLWD 1825

[Close]

BLAST of ClCG02G006510.1 vs. TrEMBL
Match: A5AY60_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_000485 PE=4 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 1.0e-41
Identity = 124/404 (30.69%), Postives = 182/404 (45.05%), Query Frame = 1


Query: 34   NPKQSGFWDPIIKRIDKKLSSWQLSFISKGGRLTLIQAVLS-----------------SS 93
            NPK  GFWD +++RI ++L  W+ +++S GGR+TLIQ+ LS                 S 
Sbjct: 705  NPKTIGFWDLVVERISRRLDGWKKTYLSLGGRITLIQSCLSHIPSYFISLFKIPASIASK 764

Query: 94   VERLMRNFLWKDFGNQNGSHLVRWDFVTRPKDKGGIGIDKVRITNEALLGKWIWRYVPEP 153
            +E++ RNFLW   G +   HLVRW+ V+RPK+ GG+G  K+ + N ALLGKW+WR+  E 
Sbjct: 765  IEKMQRNFLWSGAGEEKKDHLVRWEVVSRPKELGGLGFGKISLRNIALLGKWLWRFPRER 824

Query: 154  DQLWRSLIDGIYATCTPGSIPSLNNFGSARAPC--------------------GSNILFW 213
              LW  +I  IY T   G   ++    S R P                     G  I FW
Sbjct: 825  SGLWHKVIVSIYGTHPNGWDANMVVRWSHRCPWKAIAQVFQEFSPFVRLVVGNGERIRFW 884

Query: 214  HHNWDGGIAKRITCPRFYNISENKVITVKDA-WNSNQSSWNPSFRRPLLDRE------MQ 273
               W G  +        Y +   K +TV +   NS   +WN +FRR L D E      + 
Sbjct: 885  EDLWWGNQSLCSQFADLYRVIFVKNLTVSNVLGNSFPLAWNLNFRRNLTDSEIDFLQRLM 944

Query: 274  TPIQTEEPDIIL-----WNLGDKGLFTIKSLKQYLSASRNLPNHPDLTQVWRNFYNFVVE 333
            + + +      L     W+L   GLF++KS    LS   N         +W +     V+
Sbjct: 945  SSLSSVHFSPSLADSRAWSLSSSGLFSVKSFFLALSKVSNPILFLPAKFLWSSKVPSKVK 1004

Query: 334  SA-----------------VSPSSIAE-AIHSFSSLKHTTKRRTLLQNLIGATLWTVWLE 371
            +                  V P S  +  + +F  L ++ + +TL Q      +W VW E
Sbjct: 1005 ALAWIVAHGKLFKLAGLDWVPPRSFEDMLVIAFKGLGNSLRGKTLWQVACLTLVWXVWQE 1064

[Close]

BLAST of ClCG02G006510.1 vs. TrEMBL
Match: A5BQD9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_000232 PE=4 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 8.8e-38
Identity = 96/287 (33.45%), Postives = 137/287 (47.74%), Query Frame = 1


Query: 34   NPKQSGFWDPIIKRIDKKLSSWQLSFISKGGRLTLIQAVLSSS----------------- 93
            NPK S FWDP+I+RI  +L  WQ +++S GGR+TLI++ L+                   
Sbjct: 1489 NPKSSSFWDPVIERISSRLDGWQKAYLSFGGRITLIRSCLTHMPCYFLSLFKIPAXVAVR 1548

Query: 94   VERLMRNFLWKDFGNQNGSHLVRWDFVTRPKDKGGIGIDKVRITNEALLGKWIWRYVPEP 153
            +ERL R+FLW   G     HLV W+ V + K KGG+G+ ++ + N ALLGKW+WRY  E 
Sbjct: 1549 IERLQRDFLWSGVGEGKRDHLVSWEVVCKSKMKGGLGLGRISLRNSALLGKWLWRYPREG 1608

Query: 154  DQLWRSLIDGI----YATCTPGSIPSLNNFGSARAPCGSNILFWHHNWDGGIAKRITCPR 213
              LW  ++  +    Y T  P    + + F       G  I FW   W G  +  +  PR
Sbjct: 1609 SALWHQMVTSLSLEGYCTSFPRFFQNFSKFTRFMVGDGDRIRFWEDLWWGDQSLGVRFPR 1668

Query: 214  FYNISENKVITVKDAWNSNQS-SWNPSFRRPLLDREMQ-----------TPIQTEEPDII 273
               +  +K I +     S +  SWN +FRR L D E++             +    PD  
Sbjct: 1669 LLRVVMDKNIPISSILGSTRPFSWNFNFRRNLSDSEIEELESLMQSLDHLHLSPXVPDKR 1728

Query: 274  LWNLGDKGLFTIKSLKQYLSASRNLPNHPDLTQVWRNFYNFVVESAV 288
             W+L   GLFT+KS    LS    LP+      VW +   F ++S V
Sbjct: 1729 SWSLSSSGLFTVKSFFLALSQISGLPSVFPTKLVWNSQVPFKIKSFV 1775

[Close]

BLAST of ClCG02G006510.1 vs. TrEMBL
Match: A5BQD9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_000232 PE=4 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 5.4e-03
Identity = 31/98 (31.63%), Postives = 44/98 (44.90%), Query Frame = 1


Query: 274  VWRNFYNFVVESAVSPSSIAEAIH-SFSSLKHTTKRRTLLQNLIGATLWTVWLERNNRTF 333
            +W   +       V P S+ + I  +F+    + +   L Q    A LW VW ERN R F
Sbjct: 1826 LWHRLFQLTKIDWVPPRSVFDMISINFNGFGSSKRGIVLWQAACIAILWVVWRERNARIF 1885

Query: 334  HDGSKSQRQLWEDILSLSSLWCKKSPDCNYSIASISLN 371
             D S++   LW+ I  L+SLW      C+     I LN
Sbjct: 1886 EDKSRNSENLWDMIHFLASLWV----SCSKVFKGIPLN 1919

HSP 2 Score: 164.1 bits (414), Expect = 3.3e-37
Identity = 103/303 (33.99%), Postives = 139/303 (45.87%), Query Frame = 1


Query: 34  NPKQSGFWDPIIKRIDKKLSSWQLSFISKGGRLTLIQAVLS-----------------SS 93
           NPK SGFWDP+I+RI ++L  WQ +++S GGR+TLIQ+ L+                 + 
Sbjct: 258 NPKASGFWDPVIERISRRLDGWQKAYLSFGGRITLIQSCLTHMPCYFLSLFKIPASVAAK 317

Query: 94  VERLMRNFLWKDFGNQNGSHLVRWDFVTRPKDKGGIGIDKVRITNEALLGKWIWRYVPEP 153
           +ER+ R FLW   G     HLV WD V +PK +GG+G  K+ + N ALLGKW+WRY  E 
Sbjct: 318 IERMQREFLWSGVGEGKRDHLVNWDVVCKPKSRGGLGFGKITMRNVALLGKWLWRYPREG 377

Query: 154 DQLWRSLIDGIYATCTPGSIPSLNNFGSARAPC--------------------GSNILFW 213
             LW  +I  IY + + G   + N   S R P                     G  I FW
Sbjct: 378 SALWHQVILSIYGSHSNGWDVNNNVRWSHRCPWKAIALVFQEFSKFTRFVVGDGDRIRFW 437

Query: 214 HHNWDGGIAKRITCPRFYNISENKVITVKDAWN-SNQSSWNPSFRRPLLDREMQ------ 273
              W G     I  PR  ++  +K   +      S   SWN +FRR L D E++      
Sbjct: 438 DDLWWGNQPLGIQYPRLLSVVMDKNAPISSILGYSRPFSWNFNFRRNLTDSEIEDLESLM 497

Query: 274 -----TPIQTEEPDIILWNLGDKGLFTIKSLKQYLSASRNLPNHPDLTQVWRNFYNFVVE 288
                  +    PD   W++   GLFT+KS    LS    LP       VW +   F V+
Sbjct: 498 RSLDRLHLSPSVPDKRSWSISPSGLFTVKSFFLALSQYAELPPVFPTKFVWNSQVPFKVK 557

[Close]

BLAST of ClCG02G006510.1 vs. TrEMBL
Match: A5BKH7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_026806 PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 2.8e-36
Identity = 102/303 (33.66%), Postives = 137/303 (45.21%), Query Frame = 1


Query: 34  NPKQSGFWDPIIKRIDKKLSSWQLSFISKGGRLTLIQAVLS-----------------SS 93
           NPK SGFWDP+I+RI ++L  WQ +++S GGR+TLIQ+ L+                 + 
Sbjct: 227 NPKASGFWDPVIERISRRLDGWQKAYLSFGGRITLIQSCLTHMPCYFLSLFKIPASVAAK 286

Query: 94  VERLMRNFLWKDFGNQNGSHLVRWDFVTRPKDKGGIGIDKVRITNEALLGKWIWRYVPEP 153
           +ER+ R FLW   G     HLV WD V +PK +GG+G  K+ + N ALLGKW+WRY  E 
Sbjct: 287 IERMQREFLWSGVGEGKRDHLVNWDVVCKPKSRGGLGFGKISMRNVALLGKWLWRYPREG 346

Query: 154 DQLWRSLIDGIYATCTPGSIPSLNNFGSARAPC--------------------GSNILFW 213
             LW  +I  IY + + G   + N   S R P                     G  I FW
Sbjct: 347 SALWHQVILSIYGSHSNGWDVNNNVRWSHRCPWKAIALVFQEFSKFTRFVVGDGDRIRFW 406

Query: 214 HHNWDGGIAKRITCPRFYNISENKVITVKDAWN-SNQSSWNPSFRRPLLDREMQ------ 273
              W G        PR  ++  +K   +      S   SWN +FRR L D E++      
Sbjct: 407 DDLWWGDQTLGTQYPRLLSVVTDKNAPISSILGYSRPFSWNFNFRRNLTDSEIEDLESLM 466

Query: 274 -----TPIQTEEPDIILWNLGDKGLFTIKSLKQYLSASRNLPNHPDLTQVWRNFYNFVVE 288
                  I    PD   W++   GLFT+KS    LS     P       VW +   F V+
Sbjct: 467 RSLDRLHISPSVPDKRSWSISPSGLFTVKSFFLALSQYSESPPVFPTKFVWNSQVPFKVK 526

[Close]

BLAST of ClCG02G006510.1 vs. TAIR10
Match: AT4G29090.1 (AT4G29090.1 Ribonuclease H-like superfamily protein)

HSP 1 Score: 58.2 bits (139), Expect = 1.3e-08
Identity = 49/217 (22.58%), Postives = 77/217 (35.48%), Query Frame = 1


Query: 68  LIQAVLSSSVERLMRNFLWKDFGNQNGSHLVRWDFVTRPKDKGGIGIDKVRITNEALLGK 127
           L+   +   +  ++ +F W++     G H   WD ++  K +GGIG   +   N ALLGK
Sbjct: 12  LLPKTVCKQIISVLADFWWRNKQEAKGMHWKAWDHLSCYKAEGGIGFKDIEAFNLALLGK 71

Query: 128 WIWRYVPEPDQLWRSLIDGIY------ATCTPGSIPS------------LNNFGSARAPC 187
            +WR +  P+ L   +    Y           GS PS            L     A    
Sbjct: 72  QMWRMLSRPESLMAKVFKSRYFHKSDPLNAPLGSRPSFVWKSIHASQEILRQGARAVVGN 131

Query: 188 GSNILFWHHNW------DGGIAKRITCPRFYNISENKVITVKDAWNSNQSSWNPSFRRPL 247
           G +I+ W H W         +  +   P+ Y  S + ++ V D  + +   W       L
Sbjct: 132 GEDIIIWRHKWLDSKPASAALRMQRVPPQEY-ASVSSILKVSDLIDESGREWRKDVIEML 191

Query: 248 LDREMQTPIQTEEP------DIILWNLGDKGLFTIKS 255
                +  I    P      D   W+    G +T+KS
Sbjct: 192 FPEVERKLIGELRPGGRRILDSYTWDYTSSGDYTVKS 227

[Close]

BLAST of ClCG02G006510.1 vs. TAIR10
Match: AT3G24255.1 (AT3G24255.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein)

HSP 1 Score: 54.7 bits (130), Expect = 1.4e-07
Identity = 40/166 (24.10%), Postives = 64/166 (38.55%), Query Frame = 1


Query: 41  WDPIIKRIDKKLSSWQLSFISKGGRLTLIQAVLSS-----------------SVERLMRN 100
           + P++++I  ++  W    +S  GRL LI +V+ S                  ++ +  +
Sbjct: 42  YGPLVEKIRVRIGKWTARHLSFAGRLQLISSVIHSLTNFWMSAFRLPSACIKEIDSICSS 101

Query: 101 FLWKDFGNQNGSHLVRWDFVTRPKDKGGIGIDKVR---------ITNEALLGKWIWRYVP 160
           FLW           V W  V  PKD+GG+GI  ++         I+    LG W+W+ + 
Sbjct: 102 FLWSGPELNTKKAKVAWSDVCTPKDEGGLGIRSLKEANKGSFWSISGNTTLGSWMWKKIL 161

Query: 161 EPDQLWRSLIDGIYATCTPGSIPSLNNFGSARAPCGSNILFWHHNW 181
           +     R+L  G            ++N        GSN  FW  NW
Sbjct: 162 K----HRALASGFVK-------HDIHN--------GSNTSFWFDNW 188

[Close]

BLAST of ClCG02G006510.1 vs. NCBI nr
Match: gi|147780533|emb|CAN69126.1| (hypothetical protein VITISV_008195 [Vitis vinifera])

HSP 1 Score: 180.3 bits (456), Expect = 6.4e-42
Identity = 120/374 (32.09%), Postives = 161/374 (43.05%), Query Frame = 1


Query: 34   NPKQSGFWDPIIKRIDKKLSSWQLSFISKGGRLTLIQAVLS-----------------SS 93
            NPK SGFWDP+I+RI ++L  WQ +++S GGR+TLIQ+ L+                 + 
Sbjct: 1480 NPKASGFWDPVIERISRRLDGWQKAYLSFGGRITLIQSCLTHMPCYFLSLFRIPASVAAK 1539

Query: 94   VERLMRNFLWKDFGNQNGSHLVRWDFVTRPKDKGGIGIDKVRITNEALLGKWIWRYVPEP 153
            +ER+ R FLW   G     HLV WD V +PK +GG+G  K+ + N ALLGKW+WRY  E 
Sbjct: 1540 IERMQREFLWSGVGEGKRDHLVNWDVVCKPKSRGGLGFGKISMRNVALLGKWLWRYPREG 1599

Query: 154  DQLWRSLIDGIYATCTPGSIPSLNNFGSARAPC--------------------GSNILFW 213
              LW  +I  IY + + G   + N   S R P                     G  I FW
Sbjct: 1600 SALWHQVILSIYGSHSNGWDVNNNVRWSHRCPWKAIALVFQEFSKFTRFVVGDGDRIRFW 1659

Query: 214  HHNWDGGIAKRITCPRFYNISENKVITVKDAWN-SNQSSWNPSFRRPLLDREMQ------ 273
               W G        PR  ++  +K   +      S   SWN +FRR L D E++      
Sbjct: 1660 DDLWWGDQPLGTQYPRLLSVVTDKNALISSILGYSRPFSWNFNFRRNLTDSEIEDLESLM 1719

Query: 274  -----TPIQTEEPDIILWNLGDKGLFTIKSLKQYLSASRNLPNHPDLTQVWRNFYNFVVE 333
                   I    PD   W++   GLFT+KS    LS     P       VW +    V  
Sbjct: 1720 RSLDRLHISPSVPDKRSWSISPSGLFTVKSFFLALSQHSESPPVFPTKFVWNSQRGVV-- 1779

Query: 334  SAVSPSSIAEAIHSFSSLKHTTKRRTLLQNLIGATLWTVWLERNNRTFHDGSKSQRQLWE 357
                                      L Q+   A +W VW ERN R F D +++   LW+
Sbjct: 1780 --------------------------LWQDACIALMWVVWRERNARIFEDKARNSGCLWD 1825

[Close]

BLAST of ClCG02G006510.1 vs. NCBI nr
Match: gi|147844192|emb|CAN82685.1| (hypothetical protein VITISV_000485 [Vitis vinifera])

HSP 1 Score: 179.1 bits (453), Expect = 1.4e-41
Identity = 124/404 (30.69%), Postives = 182/404 (45.05%), Query Frame = 1


Query: 34   NPKQSGFWDPIIKRIDKKLSSWQLSFISKGGRLTLIQAVLS-----------------SS 93
            NPK  GFWD +++RI ++L  W+ +++S GGR+TLIQ+ LS                 S 
Sbjct: 705  NPKTIGFWDLVVERISRRLDGWKKTYLSLGGRITLIQSCLSHIPSYFISLFKIPASIASK 764

Query: 94   VERLMRNFLWKDFGNQNGSHLVRWDFVTRPKDKGGIGIDKVRITNEALLGKWIWRYVPEP 153
            +E++ RNFLW   G +   HLVRW+ V+RPK+ GG+G  K+ + N ALLGKW+WR+  E 
Sbjct: 765  IEKMQRNFLWSGAGEEKKDHLVRWEVVSRPKELGGLGFGKISLRNIALLGKWLWRFPRER 824

Query: 154  DQLWRSLIDGIYATCTPGSIPSLNNFGSARAPC--------------------GSNILFW 213
              LW  +I  IY T   G   ++    S R P                     G  I FW
Sbjct: 825  SGLWHKVIVSIYGTHPNGWDANMVVRWSHRCPWKAIAQVFQEFSPFVRLVVGNGERIRFW 884

Query: 214  HHNWDGGIAKRITCPRFYNISENKVITVKDA-WNSNQSSWNPSFRRPLLDRE------MQ 273
               W G  +        Y +   K +TV +   NS   +WN +FRR L D E      + 
Sbjct: 885  EDLWWGNQSLCSQFADLYRVIFVKNLTVSNVLGNSFPLAWNLNFRRNLTDSEIDFLQRLM 944

Query: 274  TPIQTEEPDIIL-----WNLGDKGLFTIKSLKQYLSASRNLPNHPDLTQVWRNFYNFVVE 333
            + + +      L     W+L   GLF++KS    LS   N         +W +     V+
Sbjct: 945  SSLSSVHFSPSLADSRAWSLSSSGLFSVKSFFLALSKVSNPILFLPAKFLWSSKVPSKVK 1004

Query: 334  SA-----------------VSPSSIAE-AIHSFSSLKHTTKRRTLLQNLIGATLWTVWLE 371
            +                  V P S  +  + +F  L ++ + +TL Q      +W VW E
Sbjct: 1005 ALAWIVAHGKLFKLAGLDWVPPRSFEDMLVIAFKGLGNSLRGKTLWQVACLTLVWXVWQE 1064

[Close]

BLAST of ClCG02G006510.1 vs. NCBI nr
Match: gi|147857332|emb|CAN79190.1| (hypothetical protein VITISV_000232 [Vitis vinifera])

HSP 1 Score: 166.0 bits (419), Expect = 1.3e-37
Identity = 96/287 (33.45%), Postives = 137/287 (47.74%), Query Frame = 1


Query: 34   NPKQSGFWDPIIKRIDKKLSSWQLSFISKGGRLTLIQAVLSSS----------------- 93
            NPK S FWDP+I+RI  +L  WQ +++S GGR+TLI++ L+                   
Sbjct: 1489 NPKSSSFWDPVIERISSRLDGWQKAYLSFGGRITLIRSCLTHMPCYFLSLFKIPAXVAVR 1548

Query: 94   VERLMRNFLWKDFGNQNGSHLVRWDFVTRPKDKGGIGIDKVRITNEALLGKWIWRYVPEP 153
            +ERL R+FLW   G     HLV W+ V + K KGG+G+ ++ + N ALLGKW+WRY  E 
Sbjct: 1549 IERLQRDFLWSGVGEGKRDHLVSWEVVCKSKMKGGLGLGRISLRNSALLGKWLWRYPREG 1608

Query: 154  DQLWRSLIDGI----YATCTPGSIPSLNNFGSARAPCGSNILFWHHNWDGGIAKRITCPR 213
              LW  ++  +    Y T  P    + + F       G  I FW   W G  +  +  PR
Sbjct: 1609 SALWHQMVTSLSLEGYCTSFPRFFQNFSKFTRFMVGDGDRIRFWEDLWWGDQSLGVRFPR 1668

Query: 214  FYNISENKVITVKDAWNSNQS-SWNPSFRRPLLDREMQ-----------TPIQTEEPDII 273
               +  +K I +     S +  SWN +FRR L D E++             +    PD  
Sbjct: 1669 LLRVVMDKNIPISSILGSTRPFSWNFNFRRNLSDSEIEELESLMQSLDHLHLSPXVPDKR 1728

Query: 274  LWNLGDKGLFTIKSLKQYLSASRNLPNHPDLTQVWRNFYNFVVESAV 288
             W+L   GLFT+KS    LS    LP+      VW +   F ++S V
Sbjct: 1729 SWSLSSSGLFTVKSFFLALSQISGLPSVFPTKLVWNSQVPFKIKSFV 1775

[Close]

BLAST of ClCG02G006510.1 vs. NCBI nr
Match: gi|147857332|emb|CAN79190.1| (hypothetical protein VITISV_000232 [Vitis vinifera])

HSP 1 Score: 50.4 bits (119), Expect = 7.7e-03
Identity = 31/98 (31.63%), Postives = 44/98 (44.90%), Query Frame = 1


Query: 274  VWRNFYNFVVESAVSPSSIAEAIH-SFSSLKHTTKRRTLLQNLIGATLWTVWLERNNRTF 333
            +W   +       V P S+ + I  +F+    + +   L Q    A LW VW ERN R F
Sbjct: 1826 LWHRLFQLTKIDWVPPRSVFDMISINFNGFGSSKRGIVLWQAACIAILWVVWRERNARIF 1885

Query: 334  HDGSKSQRQLWEDILSLSSLWCKKSPDCNYSIASISLN 371
             D S++   LW+ I  L+SLW      C+     I LN
Sbjct: 1886 EDKSRNSENLWDMIHFLASLWV----SCSKVFKGIPLN 1919

HSP 2 Score: 164.1 bits (414), Expect = 4.8e-37
Identity = 103/303 (33.99%), Postives = 139/303 (45.87%), Query Frame = 1


Query: 34  NPKQSGFWDPIIKRIDKKLSSWQLSFISKGGRLTLIQAVLS-----------------SS 93
           NPK SGFWDP+I+RI ++L  WQ +++S GGR+TLIQ+ L+                 + 
Sbjct: 258 NPKASGFWDPVIERISRRLDGWQKAYLSFGGRITLIQSCLTHMPCYFLSLFKIPASVAAK 317

Query: 94  VERLMRNFLWKDFGNQNGSHLVRWDFVTRPKDKGGIGIDKVRITNEALLGKWIWRYVPEP 153
           +ER+ R FLW   G     HLV WD V +PK +GG+G  K+ + N ALLGKW+WRY  E 
Sbjct: 318 IERMQREFLWSGVGEGKRDHLVNWDVVCKPKSRGGLGFGKITMRNVALLGKWLWRYPREG 377

Query: 154 DQLWRSLIDGIYATCTPGSIPSLNNFGSARAPC--------------------GSNILFW 213
             LW  +I  IY + + G   + N   S R P                     G  I FW
Sbjct: 378 SALWHQVILSIYGSHSNGWDVNNNVRWSHRCPWKAIALVFQEFSKFTRFVVGDGDRIRFW 437

Query: 214 HHNWDGGIAKRITCPRFYNISENKVITVKDAWN-SNQSSWNPSFRRPLLDREMQ------ 273
              W G     I  PR  ++  +K   +      S   SWN +FRR L D E++      
Sbjct: 438 DDLWWGNQPLGIQYPRLLSVVMDKNAPISSILGYSRPFSWNFNFRRNLTDSEIEDLESLM 497

Query: 274 -----TPIQTEEPDIILWNLGDKGLFTIKSLKQYLSASRNLPNHPDLTQVWRNFYNFVVE 288
                  +    PD   W++   GLFT+KS    LS    LP       VW +   F V+
Sbjct: 498 RSLDRLHLSPSVPDKRSWSISPSGLFTVKSFFLALSQYAELPPVFPTKFVWNSQVPFKVK 557

[Close]

BLAST of ClCG02G006510.1 vs. NCBI nr
Match: gi|147792407|emb|CAN63585.1| (hypothetical protein VITISV_026806 [Vitis vinifera])

HSP 1 Score: 161.0 bits (406), Expect = 4.0e-36
Identity = 102/303 (33.66%), Postives = 137/303 (45.21%), Query Frame = 1


Query: 34  NPKQSGFWDPIIKRIDKKLSSWQLSFISKGGRLTLIQAVLS-----------------SS 93
           NPK SGFWDP+I+RI ++L  WQ +++S GGR+TLIQ+ L+                 + 
Sbjct: 227 NPKASGFWDPVIERISRRLDGWQKAYLSFGGRITLIQSCLTHMPCYFLSLFKIPASVAAK 286

Query: 94  VERLMRNFLWKDFGNQNGSHLVRWDFVTRPKDKGGIGIDKVRITNEALLGKWIWRYVPEP 153
           +ER+ R FLW   G     HLV WD V +PK +GG+G  K+ + N ALLGKW+WRY  E 
Sbjct: 287 IERMQREFLWSGVGEGKRDHLVNWDVVCKPKSRGGLGFGKISMRNVALLGKWLWRYPREG 346

Query: 154 DQLWRSLIDGIYATCTPGSIPSLNNFGSARAPC--------------------GSNILFW 213
             LW  +I  IY + + G   + N   S R P                     G  I FW
Sbjct: 347 SALWHQVILSIYGSHSNGWDVNNNVRWSHRCPWKAIALVFQEFSKFTRFVVGDGDRIRFW 406

Query: 214 HHNWDGGIAKRITCPRFYNISENKVITVKDAWN-SNQSSWNPSFRRPLLDREMQ------ 273
              W G        PR  ++  +K   +      S   SWN +FRR L D E++      
Sbjct: 407 DDLWWGDQTLGTQYPRLLSVVTDKNAPISSILGYSRPFSWNFNFRRNLTDSEIEDLESLM 466

Query: 274 -----TPIQTEEPDIILWNLGDKGLFTIKSLKQYLSASRNLPNHPDLTQVWRNFYNFVVE 288
                  I    PD   W++   GLFT+KS    LS     P       VW +   F V+
Sbjct: 467 RSLDRLHISPSVPDKRSWSISPSGLFTVKSFFLALSQYSESPPVFPTKFVWNSQVPFKVK 526

The following BLAST results are available for this feature:

BLAST of ClCG02G006510.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RNHX1_ARATH	8.2e-13	32.79	Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana GN=At1g65750 P...	[more]

BLAST of ClCG02G006510.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A5AK27_VITVI	4.5e-42	32.09	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_008195 PE=4 SV=1	[more]
A5AY60_VITVI	1.0e-41	30.69	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_000485 PE=4 SV=1	[more]
A5BQD9_VITVI	8.8e-38	33.45	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_000232 PE=4 SV=1	[more]
A5BQD9_VITVI	5.4e-03	31.63	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_000232 PE=4 SV=1	[more]
A5BKH7_VITVI	2.8e-36	33.66	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_026806 PE=4 SV=1	[more]

BLAST of ClCG02G006510.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G29090.1	1.3e-08	22.58	Ribonuclease H-like superfamily protein	[more]
AT3G24255.1	1.4e-07	24.10	RNA-directed DNA polymerase (reverse transcriptase)-related family p...	[more]

BLAST of ClCG02G006510.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|147780533\|emb\|CAN69126.1\|	6.4e-42	32.09	hypothetical protein VITISV_008195 [Vitis vinifera]	[more]
gi\|147844192\|emb\|CAN82685.1\|	1.4e-41	30.69	hypothetical protein VITISV_000485 [Vitis vinifera]	[more]
gi\|147857332\|emb\|CAN79190.1\|	1.3e-37	33.45	hypothetical protein VITISV_000232 [Vitis vinifera]	[more]
gi\|147857332\|emb\|CAN79190.1\|	7.7e-03	31.63	hypothetical protein VITISV_000232 [Vitis vinifera]	[more]
gi\|147792407\|emb\|CAN63585.1\|	4.0e-36	33.66	hypothetical protein VITISV_026806 [Vitis vinifera]	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
ClCG02G006510	ClCG02G006510	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
ClCG02G006510.1	ClCG02G006510.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG02G006510.1.cds6	ClCG02G006510.1.cds6	CDS
ClCG02G006510.1.cds5	ClCG02G006510.1.cds5	CDS
ClCG02G006510.1.cds4	ClCG02G006510.1.cds4	CDS
ClCG02G006510.1.cds3	ClCG02G006510.1.cds3	CDS
ClCG02G006510.1.cds2	ClCG02G006510.1.cds2	CDS
ClCG02G006510.1.cds1	ClCG02G006510.1.cds1	CDS