ClCG02G006510 (gene) Watermelon (Charleston Gray)

Overview
NameClCG02G006510
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionRibonuclease H-like superfamily protein LENGTH=575
LocationCG_Chr02 : 7483845 .. 7486693 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTCGCAGATTTCCTTTGAGGATGTTTTTCCTTTTCGGGCATGCGTATTTAATGGCAATATGGAGCTTTGCTAGGGATGTGGAGATTATTGAATGTACTTGAATGTTTTGTTTTTTGGTGAAGCCGAAATTTGGTTCTTTATTATGTTGTGCAAGTTGTTGATAAAACTTTTTTGTGCAAGAAGCAAGTCATAGTCTTAGGGGAGCCTAATATGTCATGACGGGAGAAAGAGCTCTCCAACTTAAGGCGTACTTAAGTTAGATCAGTGAAGGTCATTCATTGAAGGAAAAAAAAAAACTAGGAAGATCACAACAATAGAGAGGAAGTCCCAAACATTGAGGAGAGTTGAAGCGTTCAACACTAATATTAATACACTCTCGCAGATAGGGGAGCTTAGGTGATCTATGAGTTAGACTCAATGGGAGCCACTGTAGTAGTCGCTATATTACAGATAAGTACTACGTTGTAATTGTTTGACTTTTTAATATTAGTGAATTATCTTTCATGGGCATACTGTCTAGGGGTTAGGAGTAAGTGGTTATCATCTAATTGGGTTACTAATTTTTGTGCATTTTTTTTTAATCTCTGTTATAATGCGTGCGTATGCTTTCTGTTTGACATCTGTGTTCTGAGTTATGTGTCATCTATTTGTTCAATTGTATATATAGCAAATTTGTGTTGTTTTGCAGATCCTTTTCTTAAAAAAAAAATTCAACTTTTCTTTTAACAGATCTTTTGTCTTTTGAAATACGAGAAAGAAATAATATTAAAAGTAAATAAATCTTTTAGCATCCTCATCTTCTAAAAATAAAAAGAAAAAAAGAAAAAGCATGGATTGTATTTAATTCAACTTATATGCATGATTGACAATAAGTATACAAATTATATTCTACCAACCAAAATAATCATGAACCAATCAAGTTTAAAAGTCTCTATTTAATATATATTATAAAATAAGTTATTTATGTGGAGATCAATGGCTATGGCGATTGATGAAGATCAACCAAACTAGTATGGAATTTTAATTTTCATTGATTACACACAATACATGTTCAGAAATAAGATTAGATAATATCAAAATAGGAATTAGTATAAAAATATCAAGTAAGGATTTGAGAAGAGACGAAAAACGGAAACATTGGGAGGTCAAAAACAATAAATAAAAATTAATTATCACATGTGTGTTTGGTCCTAAGTTTTCAAAACATACCATTATTTTAGTCTTAAGGTTTCAAAAATAAATTTAAAAGGTCATTACAATGATTTATTATCACCTTCCGCTTTTAAGGTATATCTTACCAAGTCTCCGTATATTTGTCAAATGCCTTAAAAAATAGGAATAATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAATCTTTTCAACATTTAAACCTTTACTTATACAGATTCCTCATATGAAAGAAAACTATAACACAAACTTTAATCAATTTGAGCTTAAAGGAGGGAAAACACTATGAAATTGGTTGCCTCTGGGAGGCAATCCTAAGCAGAGTGGTTTTTGGGATCCCATCATTAAGCGTATAGATAAAAAGCTCTCCTCCTGGCAGCTTTCTTTCATCTCCAAAGGTGGCAGACTTACCCTGATTCAGGCGGTCCTGAGTAGTATACCAACATATTTCATGTCTCTCTTCAAGGCTCCGTTGAAAGGCTGATGAGAAACTTCCTTTGGAAAGACTTTGGAAATCAAAATGGCTCTCATCTAGTGAGATGGGATTTTGTCACTCGTCCAAAAGACAAAGGTGGTATCGGCATTGACAAAGTTAGAATTACAAATGAAGCTCTCCTAGGGAAGTGGATTTGGAGATATGTCCCAGAACCCGATCAGTTATGGAGATCCCTTATTGATGGTATATATGCAACCTGCACTCCTGGATCAATTCCCAGCTTGAACAACTTTGGTAGTGCCAGAGCTCCTTGGTATCAAATCAGAAAGATGGAAGATCAAAAGTGGATCAAACATTCTGTTTTGGCACCACAATTGGGATGGAGGAATTGCGAAAAGAATCACCTGTCCAAGATTTTACAACATCTCCGAAAATAAGGTTATCACTGTAAAAGATGCCTGGAACTCCAATCAAAGCAGTTGGAATCCGTCCTTTAGAAGGCCCCTCTTGGACAGAGAGATGCAGGTATGGAAATCACTCTCCTCCGGCTGGCAGACTCCAATTCAAACAGAGGAACCGGACATAATCCTCTGGAACCTGGGCGATAAAGGTTTGTTCACCATTAAATCTTTAAAGCAGTATCTGTCAGCTAGCAGAAATTTGCCCAATCACCCGGATTTAACTCAAGTGTGGGCTTCCTATATCCCAAAAAAGTGTAAGTTTTTTCCTTGGTCACTTTATCATAGGAGCATCAACACCATAGACAAGTGTCAGTCACGTAATCCTTCAATGACCCTCAATCCTAATTGGTGTGTACTTTGTAAAAGAGAAAATAAAACAGTGGAACATCTTTTTATCACTTGCACTTACTCCAGCAGGTTTGGAGGAATTTTTATAACTTTGTCGTCGAATCAGCCGTGTCTCCTTCCTCTATAGCAGAAGCTATTCACTCCTTCTCATCCCTCAAGCACACAACAAAAAGAAGAACTTTGTTGCAAAACTTGATTGGTGCTACCCTCTGGACTGTTTGGCTGGAAAGAAACAACAGGACCTTCCATGATGGCAGCAAATCCCAAAGGCAATTGTGGGAAGATATCCTAAGCCTCTCTTCCCTTTGGTGTAAAAAATCACCTGATTGTAACTATAGCATTGCTAGTATCTCCCTCAATTGGAATGCTTTTCTGTAG

mRNA sequence

ATGGCTCGCAGATTTCCTTTGAGGATGTTTTTCCTTTTCGGGCATGCGTATTTAATGGCAATATGGAGCTTTGCTAGGGATGTGGAGATTATTGAATGCAATCCTAAGCAGAGTGGTTTTTGGGATCCCATCATTAAGCGTATAGATAAAAAGCTCTCCTCCTGGCAGCTTTCTTTCATCTCCAAAGGTGGCAGACTTACCCTGATTCAGGCGGTCCTGAGTAGCTCCGTTGAAAGGCTGATGAGAAACTTCCTTTGGAAAGACTTTGGAAATCAAAATGGCTCTCATCTAGTGAGATGGGATTTTGTCACTCGTCCAAAAGACAAAGGTGGTATCGGCATTGACAAAGTTAGAATTACAAATGAAGCTCTCCTAGGGAAGTGGATTTGGAGATATGTCCCAGAACCCGATCAGTTATGGAGATCCCTTATTGATGGTATATATGCAACCTGCACTCCTGGATCAATTCCCAGCTTGAACAACTTTGGTAGTGCCAGAGCTCCTTGTGGATCAAACATTCTGTTTTGGCACCACAATTGGGATGGAGGAATTGCGAAAAGAATCACCTGTCCAAGATTTTACAACATCTCCGAAAATAAGGTTATCACTGTAAAAGATGCCTGGAACTCCAATCAAAGCAGTTGGAATCCGTCCTTTAGAAGGCCCCTCTTGGACAGAGAGATGCAGACTCCAATTCAAACAGAGGAACCGGACATAATCCTCTGGAACCTGGGCGATAAAGGTTTGTTCACCATTAAATCTTTAAAGCAGTATCTGTCAGCTAGCAGAAATTTGCCCAATCACCCGGATTTAACTCAAGTTTGGAGGAATTTTTATAACTTTGTCGTCGAATCAGCCGTGTCTCCTTCCTCTATAGCAGAAGCTATTCACTCCTTCTCATCCCTCAAGCACACAACAAAAAGAAGAACTTTGTTGCAAAACTTGATTGGTGCTACCCTCTGGACTGTTTGGCTGGAAAGAAACAACAGGACCTTCCATGATGGCAGCAAATCCCAAAGGCAATTGTGGGAAGATATCCTAAGCCTCTCTTCCCTTTGGTGTAAAAAATCACCTGATTGTAACTATAGCATTGCTAGTATCTCCCTCAATTGGAATGCTTTTCTGTAG

Coding sequence (CDS)

ATGGCTCGCAGATTTCCTTTGAGGATGTTTTTCCTTTTCGGGCATGCGTATTTAATGGCAATATGGAGCTTTGCTAGGGATGTGGAGATTATTGAATGCAATCCTAAGCAGAGTGGTTTTTGGGATCCCATCATTAAGCGTATAGATAAAAAGCTCTCCTCCTGGCAGCTTTCTTTCATCTCCAAAGGTGGCAGACTTACCCTGATTCAGGCGGTCCTGAGTAGCTCCGTTGAAAGGCTGATGAGAAACTTCCTTTGGAAAGACTTTGGAAATCAAAATGGCTCTCATCTAGTGAGATGGGATTTTGTCACTCGTCCAAAAGACAAAGGTGGTATCGGCATTGACAAAGTTAGAATTACAAATGAAGCTCTCCTAGGGAAGTGGATTTGGAGATATGTCCCAGAACCCGATCAGTTATGGAGATCCCTTATTGATGGTATATATGCAACCTGCACTCCTGGATCAATTCCCAGCTTGAACAACTTTGGTAGTGCCAGAGCTCCTTGTGGATCAAACATTCTGTTTTGGCACCACAATTGGGATGGAGGAATTGCGAAAAGAATCACCTGTCCAAGATTTTACAACATCTCCGAAAATAAGGTTATCACTGTAAAAGATGCCTGGAACTCCAATCAAAGCAGTTGGAATCCGTCCTTTAGAAGGCCCCTCTTGGACAGAGAGATGCAGACTCCAATTCAAACAGAGGAACCGGACATAATCCTCTGGAACCTGGGCGATAAAGGTTTGTTCACCATTAAATCTTTAAAGCAGTATCTGTCAGCTAGCAGAAATTTGCCCAATCACCCGGATTTAACTCAAGTTTGGAGGAATTTTTATAACTTTGTCGTCGAATCAGCCGTGTCTCCTTCCTCTATAGCAGAAGCTATTCACTCCTTCTCATCCCTCAAGCACACAACAAAAAGAAGAACTTTGTTGCAAAACTTGATTGGTGCTACCCTCTGGACTGTTTGGCTGGAAAGAAACAACAGGACCTTCCATGATGGCAGCAAATCCCAAAGGCAATTGTGGGAAGATATCCTAAGCCTCTCTTCCCTTTGGTGTAAAAAATCACCTGATTGTAACTATAGCATTGCTAGTATCTCCCTCAATTGGAATGCTTTTCTGTAG

Protein sequence

MARRFPLRMFFLFGHAYLMAIWSFARDVEIIECNPKQSGFWDPIIKRIDKKLSSWQLSFISKGGRLTLIQAVLSSSVERLMRNFLWKDFGNQNGSHLVRWDFVTRPKDKGGIGIDKVRITNEALLGKWIWRYVPEPDQLWRSLIDGIYATCTPGSIPSLNNFGSARAPCGSNILFWHHNWDGGIAKRITCPRFYNISENKVITVKDAWNSNQSSWNPSFRRPLLDREMQTPIQTEEPDIILWNLGDKGLFTIKSLKQYLSASRNLPNHPDLTQVWRNFYNFVVESAVSPSSIAEAIHSFSSLKHTTKRRTLLQNLIGATLWTVWLERNNRTFHDGSKSQRQLWEDILSLSSLWCKKSPDCNYSIASISLNWNAFL
Homology
[Close]
BLAST of ClCG02G006510 vs. Swiss-Prot
Match: RNHX1_ARATH (Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana GN=At1g65750 PE=3 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 8.2e-13
Identity = 40/122 (32.79%), Postives = 60/122 (49.18%), Query Frame = 1 

Query: 44  IIKRIDKKLSSWQLSFISKGGRLTLIQAVLSSS-----------------VERLMRNFLW 103
           I++R+  ++S W+   +S  GRLTL +AVLSS                  +++L R FLW
Sbjct: 16  ILERVSSRMSGWREKTLSFAGRLTLTKAVLSSMPVHSMSTILLPQSILNRLDQLSRTFLW 75

Query: 104 KDFGNQNGSHLVRWDFVTRPKDKGGIGIDKVRITNEALLGKWIWRYVPEPDQLWRSLIDG 149
                +   HLV+W  V  PK +GG+G+   +  N AL+ K  WR + E + LW  ++  
Sbjct: 76  GSTAEKKKQHLVKWSKVCSPKKEGGLGVRAAKSMNRALISKVGWRLLQEKNSLWTLVLQK 135

[Close]
BLAST of ClCG02G006510 vs. TrEMBL
Match: A5AK27_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_008195 PE=4 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 4.5e-42
Identity = 120/374 (32.09%), Postives = 161/374 (43.05%), Query Frame = 1 

Query: 34   NPKQSGFWDPIIKRIDKKLSSWQLSFISKGGRLTLIQAVLS-----------------SS 93
            NPK SGFWDP+I+RI ++L  WQ +++S GGR+TLIQ+ L+                 + 
Sbjct: 1480 NPKASGFWDPVIERISRRLDGWQKAYLSFGGRITLIQSCLTHMPCYFLSLFRIPASVAAK 1539

Query: 94   VERLMRNFLWKDFGNQNGSHLVRWDFVTRPKDKGGIGIDKVRITNEALLGKWIWRYVPEP 153
            +ER+ R FLW   G     HLV WD V +PK +GG+G  K+ + N ALLGKW+WRY  E 
Sbjct: 1540 IERMQREFLWSGVGEGKRDHLVNWDVVCKPKSRGGLGFGKISMRNVALLGKWLWRYPREG 1599

Query: 154  DQLWRSLIDGIYATCTPGSIPSLNNFGSARAPC--------------------GSNILFW 213
              LW  +I  IY + + G   + N   S R P                     G  I FW
Sbjct: 1600 SALWHQVILSIYGSHSNGWDVNNNVRWSHRCPWKAIALVFQEFSKFTRFVVGDGDRIRFW 1659

Query: 214  HHNWDGGIAKRITCPRFYNISENKVITVKDAWN-SNQSSWNPSFRRPLLDREMQ------ 273
               W G        PR  ++  +K   +      S   SWN +FRR L D E++      
Sbjct: 1660 DDLWWGDQPLGTQYPRLLSVVTDKNALISSILGYSRPFSWNFNFRRNLTDSEIEDLESLM 1719

Query: 274  -----TPIQTEEPDIILWNLGDKGLFTIKSLKQYLSASRNLPNHPDLTQVWRNFYNFVVE 333
                   I    PD   W++   GLFT+KS    LS     P       VW +    V  
Sbjct: 1720 RSLDRLHISPSVPDKRSWSISPSGLFTVKSFFLALSQHSESPPVFPTKFVWNSQRGVV-- 1779

Query: 334  SAVSPSSIAEAIHSFSSLKHTTKRRTLLQNLIGATLWTVWLERNNRTFHDGSKSQRQLWE 357
                                      L Q+   A +W VW ERN R F D +++   LW+
Sbjct: 1780 --------------------------LWQDACIALMWVVWRERNARIFEDKARNSGCLWD 1825

[Close]
BLAST of ClCG02G006510 vs. TrEMBL
Match: A5AY60_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_000485 PE=4 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 1.0e-41
Identity = 124/404 (30.69%), Postives = 182/404 (45.05%), Query Frame = 1 

Query: 34   NPKQSGFWDPIIKRIDKKLSSWQLSFISKGGRLTLIQAVLS-----------------SS 93
            NPK  GFWD +++RI ++L  W+ +++S GGR+TLIQ+ LS                 S 
Sbjct: 705  NPKTIGFWDLVVERISRRLDGWKKTYLSLGGRITLIQSCLSHIPSYFISLFKIPASIASK 764

Query: 94   VERLMRNFLWKDFGNQNGSHLVRWDFVTRPKDKGGIGIDKVRITNEALLGKWIWRYVPEP 153
            +E++ RNFLW   G +   HLVRW+ V+RPK+ GG+G  K+ + N ALLGKW+WR+  E 
Sbjct: 765  IEKMQRNFLWSGAGEEKKDHLVRWEVVSRPKELGGLGFGKISLRNIALLGKWLWRFPRER 824

Query: 154  DQLWRSLIDGIYATCTPGSIPSLNNFGSARAPC--------------------GSNILFW 213
              LW  +I  IY T   G   ++    S R P                     G  I FW
Sbjct: 825  SGLWHKVIVSIYGTHPNGWDANMVVRWSHRCPWKAIAQVFQEFSPFVRLVVGNGERIRFW 884

Query: 214  HHNWDGGIAKRITCPRFYNISENKVITVKDA-WNSNQSSWNPSFRRPLLDRE------MQ 273
               W G  +        Y +   K +TV +   NS   +WN +FRR L D E      + 
Sbjct: 885  EDLWWGNQSLCSQFADLYRVIFVKNLTVSNVLGNSFPLAWNLNFRRNLTDSEIDFLQRLM 944

Query: 274  TPIQTEEPDIIL-----WNLGDKGLFTIKSLKQYLSASRNLPNHPDLTQVWRNFYNFVVE 333
            + + +      L     W+L   GLF++KS    LS   N         +W +     V+
Sbjct: 945  SSLSSVHFSPSLADSRAWSLSSSGLFSVKSFFLALSKVSNPILFLPAKFLWSSKVPSKVK 1004

Query: 334  SA-----------------VSPSSIAE-AIHSFSSLKHTTKRRTLLQNLIGATLWTVWLE 371
            +                  V P S  +  + +F  L ++ + +TL Q      +W VW E
Sbjct: 1005 ALAWIVAHGKLFKLAGLDWVPPRSFEDMLVIAFKGLGNSLRGKTLWQVACLTLVWXVWQE 1064

[Close]
BLAST of ClCG02G006510 vs. TrEMBL
Match: A5BQD9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_000232 PE=4 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 8.8e-38
Identity = 96/287 (33.45%), Postives = 137/287 (47.74%), Query Frame = 1 

Query: 34   NPKQSGFWDPIIKRIDKKLSSWQLSFISKGGRLTLIQAVLSSS----------------- 93
            NPK S FWDP+I+RI  +L  WQ +++S GGR+TLI++ L+                   
Sbjct: 1489 NPKSSSFWDPVIERISSRLDGWQKAYLSFGGRITLIRSCLTHMPCYFLSLFKIPAXVAVR 1548

Query: 94   VERLMRNFLWKDFGNQNGSHLVRWDFVTRPKDKGGIGIDKVRITNEALLGKWIWRYVPEP 153
            +ERL R+FLW   G     HLV W+ V + K KGG+G+ ++ + N ALLGKW+WRY  E 
Sbjct: 1549 IERLQRDFLWSGVGEGKRDHLVSWEVVCKSKMKGGLGLGRISLRNSALLGKWLWRYPREG 1608

Query: 154  DQLWRSLIDGI----YATCTPGSIPSLNNFGSARAPCGSNILFWHHNWDGGIAKRITCPR 213
              LW  ++  +    Y T  P    + + F       G  I FW   W G  +  +  PR
Sbjct: 1609 SALWHQMVTSLSLEGYCTSFPRFFQNFSKFTRFMVGDGDRIRFWEDLWWGDQSLGVRFPR 1668

Query: 214  FYNISENKVITVKDAWNSNQS-SWNPSFRRPLLDREMQ-----------TPIQTEEPDII 273
               +  +K I +     S +  SWN +FRR L D E++             +    PD  
Sbjct: 1669 LLRVVMDKNIPISSILGSTRPFSWNFNFRRNLSDSEIEELESLMQSLDHLHLSPXVPDKR 1728

Query: 274  LWNLGDKGLFTIKSLKQYLSASRNLPNHPDLTQVWRNFYNFVVESAV 288
             W+L   GLFT+KS    LS    LP+      VW +   F ++S V
Sbjct: 1729 SWSLSSSGLFTVKSFFLALSQISGLPSVFPTKLVWNSQVPFKIKSFV 1775

[Close]
BLAST of ClCG02G006510 vs. TrEMBL
Match: A5BQD9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_000232 PE=4 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 5.4e-03
Identity = 31/98 (31.63%), Postives = 44/98 (44.90%), Query Frame = 1 

Query: 274  VWRNFYNFVVESAVSPSSIAEAIH-SFSSLKHTTKRRTLLQNLIGATLWTVWLERNNRTF 333
            +W   +       V P S+ + I  +F+    + +   L Q    A LW VW ERN R F
Sbjct: 1826 LWHRLFQLTKIDWVPPRSVFDMISINFNGFGSSKRGIVLWQAACIAILWVVWRERNARIF 1885

Query: 334  HDGSKSQRQLWEDILSLSSLWCKKSPDCNYSIASISLN 371
             D S++   LW+ I  L+SLW      C+     I LN
Sbjct: 1886 EDKSRNSENLWDMIHFLASLWV----SCSKVFKGIPLN 1919


HSP 2 Score: 164.1 bits (414), Expect = 3.3e-37
Identity = 103/303 (33.99%), Postives = 139/303 (45.87%), Query Frame = 1 

Query: 34  NPKQSGFWDPIIKRIDKKLSSWQLSFISKGGRLTLIQAVLS-----------------SS 93
           NPK SGFWDP+I+RI ++L  WQ +++S GGR+TLIQ+ L+                 + 
Sbjct: 258 NPKASGFWDPVIERISRRLDGWQKAYLSFGGRITLIQSCLTHMPCYFLSLFKIPASVAAK 317

Query: 94  VERLMRNFLWKDFGNQNGSHLVRWDFVTRPKDKGGIGIDKVRITNEALLGKWIWRYVPEP 153
           +ER+ R FLW   G     HLV WD V +PK +GG+G  K+ + N ALLGKW+WRY  E 
Sbjct: 318 IERMQREFLWSGVGEGKRDHLVNWDVVCKPKSRGGLGFGKITMRNVALLGKWLWRYPREG 377

Query: 154 DQLWRSLIDGIYATCTPGSIPSLNNFGSARAPC--------------------GSNILFW 213
             LW  +I  IY + + G   + N   S R P                     G  I FW
Sbjct: 378 SALWHQVILSIYGSHSNGWDVNNNVRWSHRCPWKAIALVFQEFSKFTRFVVGDGDRIRFW 437

Query: 214 HHNWDGGIAKRITCPRFYNISENKVITVKDAWN-SNQSSWNPSFRRPLLDREMQ------ 273
              W G     I  PR  ++  +K   +      S   SWN +FRR L D E++      
Sbjct: 438 DDLWWGNQPLGIQYPRLLSVVMDKNAPISSILGYSRPFSWNFNFRRNLTDSEIEDLESLM 497

Query: 274 -----TPIQTEEPDIILWNLGDKGLFTIKSLKQYLSASRNLPNHPDLTQVWRNFYNFVVE 288
                  +    PD   W++   GLFT+KS    LS    LP       VW +   F V+
Sbjct: 498 RSLDRLHLSPSVPDKRSWSISPSGLFTVKSFFLALSQYAELPPVFPTKFVWNSQVPFKVK 557

[Close]
BLAST of ClCG02G006510 vs. TrEMBL
Match: A5BKH7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_026806 PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 2.8e-36
Identity = 102/303 (33.66%), Postives = 137/303 (45.21%), Query Frame = 1 

Query: 34  NPKQSGFWDPIIKRIDKKLSSWQLSFISKGGRLTLIQAVLS-----------------SS 93
           NPK SGFWDP+I+RI ++L  WQ +++S GGR+TLIQ+ L+                 + 
Sbjct: 227 NPKASGFWDPVIERISRRLDGWQKAYLSFGGRITLIQSCLTHMPCYFLSLFKIPASVAAK 286

Query: 94  VERLMRNFLWKDFGNQNGSHLVRWDFVTRPKDKGGIGIDKVRITNEALLGKWIWRYVPEP 153
           +ER+ R FLW   G     HLV WD V +PK +GG+G  K+ + N ALLGKW+WRY  E 
Sbjct: 287 IERMQREFLWSGVGEGKRDHLVNWDVVCKPKSRGGLGFGKISMRNVALLGKWLWRYPREG 346

Query: 154 DQLWRSLIDGIYATCTPGSIPSLNNFGSARAPC--------------------GSNILFW 213
             LW  +I  IY + + G   + N   S R P                     G  I FW
Sbjct: 347 SALWHQVILSIYGSHSNGWDVNNNVRWSHRCPWKAIALVFQEFSKFTRFVVGDGDRIRFW 406

Query: 214 HHNWDGGIAKRITCPRFYNISENKVITVKDAWN-SNQSSWNPSFRRPLLDREMQ------ 273
              W G        PR  ++  +K   +      S   SWN +FRR L D E++      
Sbjct: 407 DDLWWGDQTLGTQYPRLLSVVTDKNAPISSILGYSRPFSWNFNFRRNLTDSEIEDLESLM 466

Query: 274 -----TPIQTEEPDIILWNLGDKGLFTIKSLKQYLSASRNLPNHPDLTQVWRNFYNFVVE 288
                  I    PD   W++   GLFT+KS    LS     P       VW +   F V+
Sbjct: 467 RSLDRLHISPSVPDKRSWSISPSGLFTVKSFFLALSQYSESPPVFPTKFVWNSQVPFKVK 526

[Close]
BLAST of ClCG02G006510 vs. TAIR10
Match: AT4G29090.1 (AT4G29090.1 Ribonuclease H-like superfamily protein)

HSP 1 Score: 58.2 bits (139), Expect = 1.3e-08
Identity = 49/217 (22.58%), Postives = 77/217 (35.48%), Query Frame = 1 

Query: 68  LIQAVLSSSVERLMRNFLWKDFGNQNGSHLVRWDFVTRPKDKGGIGIDKVRITNEALLGK 127
           L+   +   +  ++ +F W++     G H   WD ++  K +GGIG   +   N ALLGK
Sbjct: 12  LLPKTVCKQIISVLADFWWRNKQEAKGMHWKAWDHLSCYKAEGGIGFKDIEAFNLALLGK 71

Query: 128 WIWRYVPEPDQLWRSLIDGIY------ATCTPGSIPS------------LNNFGSARAPC 187
            +WR +  P+ L   +    Y           GS PS            L     A    
Sbjct: 72  QMWRMLSRPESLMAKVFKSRYFHKSDPLNAPLGSRPSFVWKSIHASQEILRQGARAVVGN 131

Query: 188 GSNILFWHHNW------DGGIAKRITCPRFYNISENKVITVKDAWNSNQSSWNPSFRRPL 247
           G +I+ W H W         +  +   P+ Y  S + ++ V D  + +   W       L
Sbjct: 132 GEDIIIWRHKWLDSKPASAALRMQRVPPQEY-ASVSSILKVSDLIDESGREWRKDVIEML 191

Query: 248 LDREMQTPIQTEEP------DIILWNLGDKGLFTIKS 255
                +  I    P      D   W+    G +T+KS
Sbjct: 192 FPEVERKLIGELRPGGRRILDSYTWDYTSSGDYTVKS 227

[Close]
BLAST of ClCG02G006510 vs. TAIR10
Match: AT3G24255.1 (AT3G24255.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein)

HSP 1 Score: 54.7 bits (130), Expect = 1.4e-07
Identity = 40/166 (24.10%), Postives = 64/166 (38.55%), Query Frame = 1 

Query: 41  WDPIIKRIDKKLSSWQLSFISKGGRLTLIQAVLSS-----------------SVERLMRN 100
           + P++++I  ++  W    +S  GRL LI +V+ S                  ++ +  +
Sbjct: 42  YGPLVEKIRVRIGKWTARHLSFAGRLQLISSVIHSLTNFWMSAFRLPSACIKEIDSICSS 101

Query: 101 FLWKDFGNQNGSHLVRWDFVTRPKDKGGIGIDKVR---------ITNEALLGKWIWRYVP 160
           FLW           V W  V  PKD+GG+GI  ++         I+    LG W+W+ + 
Sbjct: 102 FLWSGPELNTKKAKVAWSDVCTPKDEGGLGIRSLKEANKGSFWSISGNTTLGSWMWKKIL 161

Query: 161 EPDQLWRSLIDGIYATCTPGSIPSLNNFGSARAPCGSNILFWHHNW 181
           +     R+L  G            ++N        GSN  FW  NW
Sbjct: 162 K----HRALASGFVK-------HDIHN--------GSNTSFWFDNW 188

[Close]
BLAST of ClCG02G006510 vs. NCBI nr
Match: gi|147780533|emb|CAN69126.1| (hypothetical protein VITISV_008195 [Vitis vinifera])

HSP 1 Score: 180.3 bits (456), Expect = 6.4e-42
Identity = 120/374 (32.09%), Postives = 161/374 (43.05%), Query Frame = 1 

Query: 34   NPKQSGFWDPIIKRIDKKLSSWQLSFISKGGRLTLIQAVLS-----------------SS 93
            NPK SGFWDP+I+RI ++L  WQ +++S GGR+TLIQ+ L+                 + 
Sbjct: 1480 NPKASGFWDPVIERISRRLDGWQKAYLSFGGRITLIQSCLTHMPCYFLSLFRIPASVAAK 1539

Query: 94   VERLMRNFLWKDFGNQNGSHLVRWDFVTRPKDKGGIGIDKVRITNEALLGKWIWRYVPEP 153
            +ER+ R FLW   G     HLV WD V +PK +GG+G  K+ + N ALLGKW+WRY  E 
Sbjct: 1540 IERMQREFLWSGVGEGKRDHLVNWDVVCKPKSRGGLGFGKISMRNVALLGKWLWRYPREG 1599

Query: 154  DQLWRSLIDGIYATCTPGSIPSLNNFGSARAPC--------------------GSNILFW 213
              LW  +I  IY + + G   + N   S R P                     G  I FW
Sbjct: 1600 SALWHQVILSIYGSHSNGWDVNNNVRWSHRCPWKAIALVFQEFSKFTRFVVGDGDRIRFW 1659

Query: 214  HHNWDGGIAKRITCPRFYNISENKVITVKDAWN-SNQSSWNPSFRRPLLDREMQ------ 273
               W G        PR  ++  +K   +      S   SWN +FRR L D E++      
Sbjct: 1660 DDLWWGDQPLGTQYPRLLSVVTDKNALISSILGYSRPFSWNFNFRRNLTDSEIEDLESLM 1719

Query: 274  -----TPIQTEEPDIILWNLGDKGLFTIKSLKQYLSASRNLPNHPDLTQVWRNFYNFVVE 333
                   I    PD   W++   GLFT+KS    LS     P       VW +    V  
Sbjct: 1720 RSLDRLHISPSVPDKRSWSISPSGLFTVKSFFLALSQHSESPPVFPTKFVWNSQRGVV-- 1779

Query: 334  SAVSPSSIAEAIHSFSSLKHTTKRRTLLQNLIGATLWTVWLERNNRTFHDGSKSQRQLWE 357
                                      L Q+   A +W VW ERN R F D +++   LW+
Sbjct: 1780 --------------------------LWQDACIALMWVVWRERNARIFEDKARNSGCLWD 1825

[Close]
BLAST of ClCG02G006510 vs. NCBI nr
Match: gi|147844192|emb|CAN82685.1| (hypothetical protein VITISV_000485 [Vitis vinifera])

HSP 1 Score: 179.1 bits (453), Expect = 1.4e-41
Identity = 124/404 (30.69%), Postives = 182/404 (45.05%), Query Frame = 1 

Query: 34   NPKQSGFWDPIIKRIDKKLSSWQLSFISKGGRLTLIQAVLS-----------------SS 93
            NPK  GFWD +++RI ++L  W+ +++S GGR+TLIQ+ LS                 S 
Sbjct: 705  NPKTIGFWDLVVERISRRLDGWKKTYLSLGGRITLIQSCLSHIPSYFISLFKIPASIASK 764

Query: 94   VERLMRNFLWKDFGNQNGSHLVRWDFVTRPKDKGGIGIDKVRITNEALLGKWIWRYVPEP 153
            +E++ RNFLW   G +   HLVRW+ V+RPK+ GG+G  K+ + N ALLGKW+WR+  E 
Sbjct: 765  IEKMQRNFLWSGAGEEKKDHLVRWEVVSRPKELGGLGFGKISLRNIALLGKWLWRFPRER 824

Query: 154  DQLWRSLIDGIYATCTPGSIPSLNNFGSARAPC--------------------GSNILFW 213
              LW  +I  IY T   G   ++    S R P                     G  I FW
Sbjct: 825  SGLWHKVIVSIYGTHPNGWDANMVVRWSHRCPWKAIAQVFQEFSPFVRLVVGNGERIRFW 884

Query: 214  HHNWDGGIAKRITCPRFYNISENKVITVKDA-WNSNQSSWNPSFRRPLLDRE------MQ 273
               W G  +        Y +   K +TV +   NS   +WN +FRR L D E      + 
Sbjct: 885  EDLWWGNQSLCSQFADLYRVIFVKNLTVSNVLGNSFPLAWNLNFRRNLTDSEIDFLQRLM 944

Query: 274  TPIQTEEPDIIL-----WNLGDKGLFTIKSLKQYLSASRNLPNHPDLTQVWRNFYNFVVE 333
            + + +      L     W+L   GLF++KS    LS   N         +W +     V+
Sbjct: 945  SSLSSVHFSPSLADSRAWSLSSSGLFSVKSFFLALSKVSNPILFLPAKFLWSSKVPSKVK 1004

Query: 334  SA-----------------VSPSSIAE-AIHSFSSLKHTTKRRTLLQNLIGATLWTVWLE 371
            +                  V P S  +  + +F  L ++ + +TL Q      +W VW E
Sbjct: 1005 ALAWIVAHGKLFKLAGLDWVPPRSFEDMLVIAFKGLGNSLRGKTLWQVACLTLVWXVWQE 1064

[Close]
BLAST of ClCG02G006510 vs. NCBI nr
Match: gi|147857332|emb|CAN79190.1| (hypothetical protein VITISV_000232 [Vitis vinifera])

HSP 1 Score: 166.0 bits (419), Expect = 1.3e-37
Identity = 96/287 (33.45%), Postives = 137/287 (47.74%), Query Frame = 1 

Query: 34   NPKQSGFWDPIIKRIDKKLSSWQLSFISKGGRLTLIQAVLSSS----------------- 93
            NPK S FWDP+I+RI  +L  WQ +++S GGR+TLI++ L+                   
Sbjct: 1489 NPKSSSFWDPVIERISSRLDGWQKAYLSFGGRITLIRSCLTHMPCYFLSLFKIPAXVAVR 1548

Query: 94   VERLMRNFLWKDFGNQNGSHLVRWDFVTRPKDKGGIGIDKVRITNEALLGKWIWRYVPEP 153
            +ERL R+FLW   G     HLV W+ V + K KGG+G+ ++ + N ALLGKW+WRY  E 
Sbjct: 1549 IERLQRDFLWSGVGEGKRDHLVSWEVVCKSKMKGGLGLGRISLRNSALLGKWLWRYPREG 1608

Query: 154  DQLWRSLIDGI----YATCTPGSIPSLNNFGSARAPCGSNILFWHHNWDGGIAKRITCPR 213
              LW  ++  +    Y T  P    + + F       G  I FW   W G  +  +  PR
Sbjct: 1609 SALWHQMVTSLSLEGYCTSFPRFFQNFSKFTRFMVGDGDRIRFWEDLWWGDQSLGVRFPR 1668

Query: 214  FYNISENKVITVKDAWNSNQS-SWNPSFRRPLLDREMQ-----------TPIQTEEPDII 273
               +  +K I +     S +  SWN +FRR L D E++             +    PD  
Sbjct: 1669 LLRVVMDKNIPISSILGSTRPFSWNFNFRRNLSDSEIEELESLMQSLDHLHLSPXVPDKR 1728

Query: 274  LWNLGDKGLFTIKSLKQYLSASRNLPNHPDLTQVWRNFYNFVVESAV 288
             W+L   GLFT+KS    LS    LP+      VW +   F ++S V
Sbjct: 1729 SWSLSSSGLFTVKSFFLALSQISGLPSVFPTKLVWNSQVPFKIKSFV 1775

[Close]
BLAST of ClCG02G006510 vs. NCBI nr
Match: gi|147857332|emb|CAN79190.1| (hypothetical protein VITISV_000232 [Vitis vinifera])

HSP 1 Score: 50.4 bits (119), Expect = 7.7e-03
Identity = 31/98 (31.63%), Postives = 44/98 (44.90%), Query Frame = 1 

Query: 274  VWRNFYNFVVESAVSPSSIAEAIH-SFSSLKHTTKRRTLLQNLIGATLWTVWLERNNRTF 333
            +W   +       V P S+ + I  +F+    + +   L Q    A LW VW ERN R F
Sbjct: 1826 LWHRLFQLTKIDWVPPRSVFDMISINFNGFGSSKRGIVLWQAACIAILWVVWRERNARIF 1885

Query: 334  HDGSKSQRQLWEDILSLSSLWCKKSPDCNYSIASISLN 371
             D S++   LW+ I  L+SLW      C+     I LN
Sbjct: 1886 EDKSRNSENLWDMIHFLASLWV----SCSKVFKGIPLN 1919


HSP 2 Score: 164.1 bits (414), Expect = 4.8e-37
Identity = 103/303 (33.99%), Postives = 139/303 (45.87%), Query Frame = 1 

Query: 34  NPKQSGFWDPIIKRIDKKLSSWQLSFISKGGRLTLIQAVLS-----------------SS 93
           NPK SGFWDP+I+RI ++L  WQ +++S GGR+TLIQ+ L+                 + 
Sbjct: 258 NPKASGFWDPVIERISRRLDGWQKAYLSFGGRITLIQSCLTHMPCYFLSLFKIPASVAAK 317

Query: 94  VERLMRNFLWKDFGNQNGSHLVRWDFVTRPKDKGGIGIDKVRITNEALLGKWIWRYVPEP 153
           +ER+ R FLW   G     HLV WD V +PK +GG+G  K+ + N ALLGKW+WRY  E 
Sbjct: 318 IERMQREFLWSGVGEGKRDHLVNWDVVCKPKSRGGLGFGKITMRNVALLGKWLWRYPREG 377

Query: 154 DQLWRSLIDGIYATCTPGSIPSLNNFGSARAPC--------------------GSNILFW 213
             LW  +I  IY + + G   + N   S R P                     G  I FW
Sbjct: 378 SALWHQVILSIYGSHSNGWDVNNNVRWSHRCPWKAIALVFQEFSKFTRFVVGDGDRIRFW 437

Query: 214 HHNWDGGIAKRITCPRFYNISENKVITVKDAWN-SNQSSWNPSFRRPLLDREMQ------ 273
              W G     I  PR  ++  +K   +      S   SWN +FRR L D E++      
Sbjct: 438 DDLWWGNQPLGIQYPRLLSVVMDKNAPISSILGYSRPFSWNFNFRRNLTDSEIEDLESLM 497

Query: 274 -----TPIQTEEPDIILWNLGDKGLFTIKSLKQYLSASRNLPNHPDLTQVWRNFYNFVVE 288
                  +    PD   W++   GLFT+KS    LS    LP       VW +   F V+
Sbjct: 498 RSLDRLHLSPSVPDKRSWSISPSGLFTVKSFFLALSQYAELPPVFPTKFVWNSQVPFKVK 557

[Close]
BLAST of ClCG02G006510 vs. NCBI nr
Match: gi|147792407|emb|CAN63585.1| (hypothetical protein VITISV_026806 [Vitis vinifera])

HSP 1 Score: 161.0 bits (406), Expect = 4.0e-36
Identity = 102/303 (33.66%), Postives = 137/303 (45.21%), Query Frame = 1 

Query: 34  NPKQSGFWDPIIKRIDKKLSSWQLSFISKGGRLTLIQAVLS-----------------SS 93
           NPK SGFWDP+I+RI ++L  WQ +++S GGR+TLIQ+ L+                 + 
Sbjct: 227 NPKASGFWDPVIERISRRLDGWQKAYLSFGGRITLIQSCLTHMPCYFLSLFKIPASVAAK 286

Query: 94  VERLMRNFLWKDFGNQNGSHLVRWDFVTRPKDKGGIGIDKVRITNEALLGKWIWRYVPEP 153
           +ER+ R FLW   G     HLV WD V +PK +GG+G  K+ + N ALLGKW+WRY  E 
Sbjct: 287 IERMQREFLWSGVGEGKRDHLVNWDVVCKPKSRGGLGFGKISMRNVALLGKWLWRYPREG 346

Query: 154 DQLWRSLIDGIYATCTPGSIPSLNNFGSARAPC--------------------GSNILFW 213
             LW  +I  IY + + G   + N   S R P                     G  I FW
Sbjct: 347 SALWHQVILSIYGSHSNGWDVNNNVRWSHRCPWKAIALVFQEFSKFTRFVVGDGDRIRFW 406

Query: 214 HHNWDGGIAKRITCPRFYNISENKVITVKDAWN-SNQSSWNPSFRRPLLDREMQ------ 273
              W G        PR  ++  +K   +      S   SWN +FRR L D E++      
Sbjct: 407 DDLWWGDQTLGTQYPRLLSVVTDKNAPISSILGYSRPFSWNFNFRRNLTDSEIEDLESLM 466

Query: 274 -----TPIQTEEPDIILWNLGDKGLFTIKSLKQYLSASRNLPNHPDLTQVWRNFYNFVVE 288
                  I    PD   W++   GLFT+KS    LS     P       VW +   F V+
Sbjct: 467 RSLDRLHISPSVPDKRSWSISPSGLFTVKSFFLALSQYSESPPVFPTKFVWNSQVPFKVK 526

The following BLAST results are available for this feature:
BLAST of ClCG02G006510 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RNHX1_ARATH8.2e-1332.79Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana GN=At1g65750 P... [more]
BLAST of ClCG02G006510 vs. TrEMBL
Match NameE-valueIdentityDescription
A5AK27_VITVI4.5e-4232.09Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_008195 PE=4 SV=1[more]
A5AY60_VITVI1.0e-4130.69Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_000485 PE=4 SV=1[more]
A5BQD9_VITVI8.8e-3833.45Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_000232 PE=4 SV=1[more]
A5BQD9_VITVI5.4e-0331.63Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_000232 PE=4 SV=1[more]
A5BKH7_VITVI2.8e-3633.66Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_026806 PE=4 SV=1[more]
BLAST of ClCG02G006510 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G29090.11.3e-0822.58 Ribonuclease H-like superfamily protein[more]
AT3G24255.11.4e-0724.10 RNA-directed DNA polymerase (reverse transcriptase)-related family p... [more]
BLAST of ClCG02G006510 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|147780533|emb|CAN69126.1|6.4e-4232.09hypothetical protein VITISV_008195 [Vitis vinifera][more]
gi|147844192|emb|CAN82685.1|1.4e-4130.69hypothetical protein VITISV_000485 [Vitis vinifera][more]
gi|147857332|emb|CAN79190.1|1.3e-3733.45hypothetical protein VITISV_000232 [Vitis vinifera][more]
gi|147857332|emb|CAN79190.1|7.7e-0331.63hypothetical protein VITISV_000232 [Vitis vinifera][more]
gi|147792407|emb|CAN63585.1|4.0e-3633.66hypothetical protein VITISV_026806 [Vitis vinifera][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG02G006510.1ClCG02G006510.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG02G006510Bottle gourd (USVL1VR-Ls)lsiwcgB233
ClCG02G006510Bottle gourd (USVL1VR-Ls)lsiwcgB330
ClCG02G006510Cucumber (Gy14) v2cgybwcgB197
ClCG02G006510Cucumber (Gy14) v2cgybwcgB507
ClCG02G006510Melon (DHL92) v3.6.1medwcgB192
ClCG02G006510Melon (DHL92) v3.6.1medwcgB413
ClCG02G006510Silver-seed gourdcarwcgB0181
ClCG02G006510Silver-seed gourdcarwcgB0288
ClCG02G006510Silver-seed gourdcarwcgB0368
ClCG02G006510Silver-seed gourdcarwcgB0445
ClCG02G006510Cucumber (Chinese Long) v3cucwcgB218
ClCG02G006510Cucumber (Chinese Long) v3cucwcgB572
ClCG02G006510Watermelon (97103) v2wcgwmbB138
ClCG02G006510Watermelon (97103) v2wcgwmbB159
ClCG02G006510Wax gourdwcgwgoB265
ClCG02G006510Wax gourdwcgwgoB267
ClCG02G006510Watermelon (Charleston Gray)wcgwcgB130
ClCG02G006510Cucumber (Gy14) v1cgywcgB396
ClCG02G006510Cucurbita maxima (Rimu)cmawcgB101
ClCG02G006510Cucurbita maxima (Rimu)cmawcgB293
ClCG02G006510Cucurbita maxima (Rimu)cmawcgB460
ClCG02G006510Cucurbita maxima (Rimu)cmawcgB643
ClCG02G006510Cucurbita moschata (Rifu)cmowcgB088
ClCG02G006510Cucurbita moschata (Rifu)cmowcgB459
ClCG02G006510Cucurbita moschata (Rifu)cmowcgB645
ClCG02G006510Wild cucumber (PI 183967)cpiwcgB217
ClCG02G006510Wild cucumber (PI 183967)cpiwcgB576
ClCG02G006510Cucumber (Chinese Long) v2cuwcgB215
ClCG02G006510Cucumber (Chinese Long) v2cuwcgB547
ClCG02G006510Melon (DHL92) v3.5.1mewcgB197
ClCG02G006510Watermelon (97103) v1wcgwmB190
ClCG02G006510Watermelon (97103) v1wcgwmB198
ClCG02G006510Cucurbita pepo (Zucchini)cpewcgB233
ClCG02G006510Cucurbita pepo (Zucchini)cpewcgB378
ClCG02G006510Cucurbita pepo (Zucchini)cpewcgB590