ClCG02G003080.1 (mRNA) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG02G003080.1
Type	mRNA
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Unknown protein
Location	CG_Chr02 : 3012005 .. 3013549 (-)
Sequence length	1453

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTCGTTGAGAAAGAAGCGCAGTGAAAGCAGAGAAGCTTGAAAGGCCGATAGAGCAAACGAAGCTAAAAGAAAACCAAAAGGTCCTCGGAATTCGATCTTCTCCGCCGGCGATCCGCCATTTTCAGAGCTGTGAAGCTCTGAGAGAAGAGAATGAAATTAGCTCCAATAGTAATATTTCTCGTCAAAGATTCTGAGGGTTTCGCCTCAGCCATTTCCGGAGCTCTTCGCCCCAACCCTCCTTTCACGGTTACCACGCTGTTAGCTCAATTTCCCTCTGTGTTATTTTTCCTTCATTGAATTCAAGTAATTAGCTGACTAACAGATCAAGTTTGGCTTGATTTTGTTAAAGGGATGGATGCTTCGAGTTCTCCCTGGAGGATTATGCAATCAAGGACCAGAAGGCCTCCGGAAGCATCGTTCACTATCTTGATGATAAGGGAATCTTTCAGGTACTTATTTCGGTTTCCGATTATGTTAGTGTTGAAAAATGGTTGGAAGTTTTATGGAGAATGTCAGTGTTAAACATGTTATGAACAAATTATCCAACGTCAAATTTCTTGTTAGATCATTTCAGCTGGTTTAGCAGTGAAATTCGTACTTGTGTATTGTGGAGTGAAAAGCTTCATTAGAACTCAGAGAATGATTGTTAAGAAATATTAGGATTTTATAGTTTTGGTAATCAACAGTATAGGACAAGGACTATTCTTTATATATATTGGCCTCAACATCATAGCTTCTGGCTGACATATTCCTTTGCTTTATAACACAACACACAAATATTAAGGAGCTAGGTTCAACTATGGATGGAGTGTGAGTTAAAGCTCAGGTGCCTTATCAATGGTGAGAAGAGGAAATGTGCGATGTCTTGTGTTCTGTTTGGGTGCTATTTCGGGTTGGATGTAGTCATTAGCTTGTCTAGGCTCATTGGAACCACATAAAGCGTGTGTTGGACCCTGTCTCCAAAAAAAAGAGCTTTCTAGTTTCTACATCTTGAGAAGTGAAATTTACTTTATAACGTACCGACACATGGATTGGATCACCACCCTTAGGGGAGCTTTTTGCATTATCCCTCAGGGAAAATCGCTCTATTCCCGATCTTTGAATCCTTGAAAGCACATATTGGGATTTGGGTTTGAGAAGAAATCTAAAGGACGAGGAGACTGAGGAGGGGTCTTGTCTATCTACCATTCTTCCCCACCTTACAATGACAAATCTTGGAGACCCATGGAGGTGGATCATTGTCGAGAAAGGCTCACCCACAGCAGTCCCTTAGCCAGAAGATTACATCTTGCGATGTATAGCCAGTCGGCATCACAAAACCTTTTACTTGTGTTTATAGAAGGGTTCTTTCCCAAAGAAAGTAAAAATTTTCATATGGGAGCTTAGCCATGGAAGCATTAGTACTGCTGATGTGCTACAAAGGAAGGCTCTTTGGCTTGTTGCTTCGCCAAATTGATTTTCCCTTTGTCAAAGGGATGGAGAGACCTTGCTGCATTATTCTTTTTGGAAGATTATCCTAATGGCNAGATGTTAAAATTGTCTCC

mRNA sequence

CTTCGTTGAGAAAGAAGCGCAGTGAAAGCAGAGAAGCTTGAAAGGCCGATAGAGCAAACGAAGCTAAAAGAAAACCAAAAGGTCCTCGGAATTCGATCTTCTCCGCCGGCGATCCGCCATTTTCAGAGCTGTGAAGCTCTGAGAGAAGAGAATGAAATTAGCTCCAATAGTAATATTTCTCGTCAAAGATTCTGAGGGTTTCGCCTCAGCCATTTCCGGAGCTCTTCGCCCCAACCCTCCTTTCACGGTTACCACGCTGGATGGATGCTTCGAGTTCTCCCTGGAGGATTATGCAATCAAGGACCAGAAGGCCTCCGGAAGCATCGTTCACTATCTTGATGATAAGGGAATCTTTCAGGTACTTATTTCGGTTTCCGATTATGTTAGTGTTGAAAAATGGTTGGAAGTTTTATGGAGAATGTCAGTGTTAAACATGTTATGAACAAATTATCCAACGTCAAATTTCTTGTTAGATCATTTCAGCTGGTTTAGCAGTGAAATTCGTACTTGTGTATTGTGGAGTGAAAAGCTTCATTAGAACTCAGAGAATGATTGTTAAGAAATATTAGGATTTTATAGTTTTGGTAATCAACAGTATAGGACAAGGACTATTCTTTATATATATTGGCCTCAACATCATAGCTTCTGGCTGACATATTCCTTTGCTTTATAACACAACACACAAATATTAAGGAGCTAGGTTCAACTATGGATGGAGTGTGAGTTAAAGCTCAGGTGCCTTATCAATGGTGAGAAGAGGAAATGTGCGATGTCTTGTGTTCTGTTTGGGTGCTATTTCGGGTTGGATGTAGTCATTAGCTTGTCTAGGCTCATTGGAACCACATAAAGCGTGTGTTGGACCCTGTCTCCAAAAAAAAGAGCTTTCTAGTTTCTACATCTTGAGAAGTGAAATTTACTTTATAACGTACCGACACATGGATTGGATCACCACCCTTAGGGGAGCTTTTTGCATTATCCCTCAGGGAAAATCGCTCTATTCCCGATCTTTGAATCCTTGAAAGCACATATTGGGATTTGGGTTTGAGAAGAAATCTAAAGGACGAGGAGACTGAGGAGGGGTCTTGTCTATCTACCATTCTTCCCCACCTTACAATGACAAATCTTGGAGACCCATGGAGGTGGATCATTGTCGAGAAAGGCTCACCCACAGCAGTCCCTTAGCCAGAAGATTACATCTTGCGATGTATAGCCAGTCGGCATCACAAAACCTTTTACTTGTGTTTATAGAAGGGTTCTTTCCCAAAGAAAGTAAAAATTTTCATATGGGAGCTTAGCCATGGAAGCATTAGTACTGCTGATGTGCTACAAAGGAAGGCTCTTTGGCTTGTTGCTTCGCCAAATTGATTTTCCCTTTGTCAAAGGGATGGAGAGACCTTGCTGCATTATTCTTTTTGGAAGATTATCCTAATGGCNAGATGTTAAAATTGTCTCC

Coding sequence (CDS)

ATGAAATTAGCTCCAATAGTAATATTTCTCGTCAAAGATTCTGAGGGTTTCGCCTCAGCCATTTCCGGAGCTCTTCGCCCCAACCCTCCTTTCACGGTTACCACGCTGGATGGATGCTTCGAGTTCTCCCTGGAGGATTATGCAATCAAGGACCAGAAGGCCTCCGGAAGCATCGTTCACTATCTTGATGATAAGGGAATCTTTCAGGTACTTATTTCGGTTTCCGATTATGTTAGTGTTGAAAAATGGTTGGAAGTTTTATGGAGAATGTCAGTGTTAAACATGTTATGA

Protein sequence

MKLAPIVIFLVKDSEGFASAISGALRPNPPFTVTTLDGCFEFSLEDYAIKDQKASGSIVHYLDDKGIFQVLISVSDYVSVEKWLEVLWRMSVLNML

Homology

[Close]

BLAST of ClCG02G003080.1 vs. TrEMBL
Match: A0A0A0K119_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G031020 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 1.7e-25
Identity = 60/74 (81.08%), Postives = 68/74 (91.89%), Query Frame = 1


Query: 1  MKLAPIVIFLVKDSEGFASAISGALRPNPPFTVTTLDGCFEFSLEDYAIKDQKASGSIVH 60
          MKLAP VIFL++DSEGFASA+SGALR +PP TVTTLD CFEFSLEDYAIKDQKASG+IVH
Sbjct: 1  MKLAPKVIFLLRDSEGFASALSGALRLSPPSTVTTLDECFEFSLEDYAIKDQKASGNIVH 60

Query: 61 YLDDKGIFQVLISV 75
          YLDDKGI+QV + +
Sbjct: 61 YLDDKGIYQVSVLI 74

[Close]

BLAST of ClCG02G003080.1 vs. TrEMBL
Match: I3SJU1_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 8.6e-14
Identity = 41/78 (52.56%), Postives = 57/78 (73.08%), Query Frame = 1


Query: 1  MKLAPIVIFLVKDSEG-FASAISGALRPNPPFTVTTLDGCFEFSLEDYAIKDQKASGSIV 60
          MK+AP V+FL +D++G F SAIS AL PNP  + T L+  FE SLE Y IKD KASG+++
Sbjct: 1  MKVAPTVVFLFRDTQGGFVSAISEALHPNPSSSFTRLEDSFELSLEGYGIKDLKASGNVI 60

Query: 61 HYLDDKGIFQVLISVSDY 78
          H++D+ GI+QV + V  +
Sbjct: 61 HHVDNHGIYQVSVVVMQH 78

[Close]

BLAST of ClCG02G003080.1 vs. TrEMBL
Match: C6TKE9_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_09G086000 PE=2 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 2.5e-13
Identity = 40/77 (51.95%), Postives = 53/77 (68.83%), Query Frame = 1


Query: 1  MKLAPIVIFLVKDSEGFASAISGALRPNPPFTVTTLDGCFEFSLEDYAIKDQKASGSIVH 60
          MK+APIV+FL +D+EGFAS IS A RP P  + T  +  FE SLE Y IK  KASGS+ H
Sbjct: 1  MKVAPIVVFLFRDTEGFASTISQAFRPKPSSSFTRQEDSFELSLEAYGIKHLKASGSVSH 60

Query: 61 YLDDKGIFQVLISVSDY 78
          ++DD G ++V I   ++
Sbjct: 61 FVDDHGAYKVTIVAMEH 77

[Close]

BLAST of ClCG02G003080.1 vs. TrEMBL
Match: A0A0B2S9P4_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_031066 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 2.5e-13
Identity = 40/77 (51.95%), Postives = 53/77 (68.83%), Query Frame = 1


Query: 1  MKLAPIVIFLVKDSEGFASAISGALRPNPPFTVTTLDGCFEFSLEDYAIKDQKASGSIVH 60
          MK+APIV+FL +D+EGFAS IS A RP P  + T  +  FE SLE Y IK  KASGS+ H
Sbjct: 1  MKVAPIVVFLFRDTEGFASTISQAFRPKPSSSFTRQEDSFELSLEAYGIKHLKASGSVSH 60

Query: 61 YLDDKGIFQVLISVSDY 78
          ++DD G ++V I   ++
Sbjct: 61 FVDDHGAYKVTIVAMEH 77

[Close]

BLAST of ClCG02G003080.1 vs. TrEMBL
Match: I1MHU8_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_15G195100 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 7.3e-13
Identity = 40/77 (51.95%), Postives = 53/77 (68.83%), Query Frame = 1


Query: 1  MKLAPIVIFLVKDSEGFASAISGALRPNPPFTVTTLDGCFEFSLEDYAIKDQKASGSIVH 60
          MK+APIV+FL +D+EGFASAIS AL  NP  + T  +  FE SLE Y IK  K SGS+ H
Sbjct: 1  MKVAPIVVFLFRDTEGFASAISQALHANPSSSFTRQEDFFELSLEAYGIKHLKTSGSVSH 60

Query: 61 YLDDKGIFQVLISVSDY 78
          ++DD G ++V I   ++
Sbjct: 61 FVDDHGAYKVTIVAMEH 77

[Close]

BLAST of ClCG02G003080.1 vs. TAIR10
Match: AT3G07640.1 (AT3G07640.1 unknown protein)

HSP 1 Score: 59.7 bits (143), Expect = 1.1e-09
Identity = 27/72 (37.50%), Postives = 44/72 (61.11%), Query Frame = 1


Query: 1  MKLAPIVIFLVKDSEGFASAISGALRPNPPFTVTTLDGCFEFSLEDYAIKDQKASGSIVH 60
          MK+A  ++FL  DS+GFA+ IS  L P+P   +  L+   +  L+ Y ++  +  GSIVH
Sbjct: 1  MKVAEKIVFLWNDSDGFAATISDTLNPSPSSPLRKLEEQIQLPLDKYGVEGVETGGSIVH 60

Query: 61 YLDDKGIFQVLI 73
          ++D+  ++QV I
Sbjct: 61 FVDENEVYQVSI 72

[Close]

BLAST of ClCG02G003080.1 vs. NCBI nr
Match: gi|449453632|ref|XP_004144560.1| (PREDICTED: uncharacterized protein LOC101217042 [Cucumis sativus])

HSP 1 Score: 123.2 bits (308), Expect = 2.4e-25
Identity = 60/74 (81.08%), Postives = 68/74 (91.89%), Query Frame = 1


Query: 1  MKLAPIVIFLVKDSEGFASAISGALRPNPPFTVTTLDGCFEFSLEDYAIKDQKASGSIVH 60
          MKLAP VIFL++DSEGFASA+SGALR +PP TVTTLD CFEFSLEDYAIKDQKASG+IVH
Sbjct: 1  MKLAPKVIFLLRDSEGFASALSGALRLSPPSTVTTLDECFEFSLEDYAIKDQKASGNIVH 60

Query: 61 YLDDKGIFQVLISV 75
          YLDDKGI+QV + +
Sbjct: 61 YLDDKGIYQVSVLI 74

[Close]

BLAST of ClCG02G003080.1 vs. NCBI nr
Match: gi|659124176|ref|XP_008462021.1| (PREDICTED: uncharacterized protein LOC103500492 [Cucumis melo])

HSP 1 Score: 121.3 bits (303), Expect = 9.1e-25
Identity = 60/74 (81.08%), Postives = 67/74 (90.54%), Query Frame = 1


Query: 1  MKLAPIVIFLVKDSEGFASAISGALRPNPPFTVTTLDGCFEFSLEDYAIKDQKASGSIVH 60
          MKLAP VIFL++DSEGFASA+SGALR NPP TVTTLD  FEFSLEDYAIKDQKASG+IVH
Sbjct: 1  MKLAPKVIFLLRDSEGFASALSGALRLNPPSTVTTLDEIFEFSLEDYAIKDQKASGNIVH 60

Query: 61 YLDDKGIFQVLISV 75
          YLDDKGI+QV + +
Sbjct: 61 YLDDKGIYQVSVLI 74

[Close]

BLAST of ClCG02G003080.1 vs. NCBI nr
Match: gi|502086674|ref|XP_004488290.1| (PREDICTED: uncharacterized protein LOC101511378 [Cicer arietinum])

HSP 1 Score: 89.0 bits (219), Expect = 5.0e-15
Identity = 41/72 (56.94%), Postives = 55/72 (76.39%), Query Frame = 1


Query: 1  MKLAPIVIFLVKDSEGFASAISGALRPNPPFTVTTLDGCFEFSLEDYAIKDQKASGSIVH 60
          MKL+PI +F+ +DS+GFAS IS AL PNP  + T ++  FE SLEDY IKD KASG ++H
Sbjct: 1  MKLSPITLFMFRDSDGFASIISQALHPNPSSSFTPIEESFELSLEDYGIKDHKASGIVLH 60

Query: 61 YLDDKGIFQVLI 73
          Y+D+ GI++V I
Sbjct: 61 YVDNHGIYKVSI 72

[Close]

BLAST of ClCG02G003080.1 vs. NCBI nr
Match: gi|388504934|gb|AFK40533.1| (unknown [Lotus japonicus])

HSP 1 Score: 84.3 bits (207), Expect = 1.2e-13
Identity = 41/78 (52.56%), Postives = 57/78 (73.08%), Query Frame = 1


Query: 1  MKLAPIVIFLVKDSEG-FASAISGALRPNPPFTVTTLDGCFEFSLEDYAIKDQKASGSIV 60
          MK+AP V+FL +D++G F SAIS AL PNP  + T L+  FE SLE Y IKD KASG+++
Sbjct: 1  MKVAPTVVFLFRDTQGGFVSAISEALHPNPSSSFTRLEDSFELSLEGYGIKDLKASGNVI 60

Query: 61 HYLDDKGIFQVLISVSDY 78
          H++D+ GI+QV + V  +
Sbjct: 61 HHVDNHGIYQVSVVVMQH 78

[Close]

BLAST of ClCG02G003080.1 vs. NCBI nr
Match: gi|359806100|ref|NP_001241187.1| (uncharacterized protein LOC100781998 [Glycine max])

HSP 1 Score: 82.8 bits (203), Expect = 3.6e-13
Identity = 40/77 (51.95%), Postives = 53/77 (68.83%), Query Frame = 1


Query: 1  MKLAPIVIFLVKDSEGFASAISGALRPNPPFTVTTLDGCFEFSLEDYAIKDQKASGSIVH 60
          MK+APIV+FL +D+EGFAS IS A RP P  + T  +  FE SLE Y IK  KASGS+ H
Sbjct: 1  MKVAPIVVFLFRDTEGFASTISQAFRPKPSSSFTRQEDSFELSLEAYGIKHLKASGSVSH 60

Query: 61 YLDDKGIFQVLISVSDY 78
          ++DD G ++V I   ++
Sbjct: 61 FVDDHGAYKVTIVAMEH 77

The following BLAST results are available for this feature:

BLAST of ClCG02G003080.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K119_CUCSA	1.7e-25	81.08	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G031020 PE=4 SV=1	[more]
I3SJU1_LOTJA	8.6e-14	52.56	Uncharacterized protein OS=Lotus japonicus PE=2 SV=1	[more]
C6TKE9_SOYBN	2.5e-13	51.95	Uncharacterized protein OS=Glycine max GN=GLYMA_09G086000 PE=2 SV=1	[more]
A0A0B2S9P4_GLYSO	2.5e-13	51.95	Uncharacterized protein OS=Glycine soja GN=glysoja_031066 PE=4 SV=1	[more]
I1MHU8_SOYBN	7.3e-13	51.95	Uncharacterized protein OS=Glycine max GN=GLYMA_15G195100 PE=4 SV=1	[more]

BLAST of ClCG02G003080.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G07640.1	1.1e-09	37.50	unknown protein	[more]

BLAST of ClCG02G003080.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449453632\|ref\|XP_004144560.1\|	2.4e-25	81.08	PREDICTED: uncharacterized protein LOC101217042 [Cucumis sativus]	[more]
gi\|659124176\|ref\|XP_008462021.1\|	9.1e-25	81.08	PREDICTED: uncharacterized protein LOC103500492 [Cucumis melo]	[more]
gi\|502086674\|ref\|XP_004488290.1\|	5.0e-15	56.94	PREDICTED: uncharacterized protein LOC101511378 [Cicer arietinum]	[more]
gi\|388504934\|gb\|AFK40533.1\|	1.2e-13	52.56	unknown [Lotus japonicus]	[more]
gi\|359806100\|ref\|NP_001241187.1\|	3.6e-13	51.95	uncharacterized protein LOC100781998 [Glycine max]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
ClCG02G003080	ClCG02G003080	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
ClCG02G003080.1	ClCG02G003080.1-protein	polypeptide

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG02G003080.1.three_prime_UTR1	ClCG02G003080.1.three_prime_UTR1	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG02G003080.1.cds2	ClCG02G003080.1.cds2	CDS
ClCG02G003080.1.cds1	ClCG02G003080.1.cds1	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG02G003080.1.five_prime_UTR1	ClCG02G003080.1.five_prime_UTR1	five_prime_UTR

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR37221	FAMILY NOT NAMED	coord: 2..74 score: 3.8
None	No IPR available	PANTHER	PTHR37221:SF1	SUBFAMILY NOT NAMED	coord: 2..74 score: 3.8