ClCG02G003080 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG02G003080
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Unknown protein
Location	CG_Chr02 : 3012005 .. 3013549 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTCGTTGAGAAAGAAGCGCAGTGAAAGCAGAGAAGCTTGAAAGGCCGATAGAGCAAACGAAGCTAAAAGAAAACCAAAAGGTCCTCGGAATTCGATCTTCTCCGCCGGCGATCCGCCATTTTCAGAGCTGTGAAGCTCTGAGAGAAGAGAATGAAATTAGCTCCAATAGTAATATTTCTCGTCAAAGATTCTGAGGGTTTCGCCTCAGCCATTTCCGGAGCTCTTCGCCCCAACCCTCCTTTCACGGTTACCACGCTGTTAGCTCAATTTCCCTCTGTGTTATTTTTCCTTCATTGAATTCAAGTAATTAGCTGACTAACAGATCAAGTTTGGCTTGATTTTGTTAAAGGGATGGATGCTTCGAGTTCTCCCTGGAGGATTATGCAATCAAGGACCAGAAGGCCTCCGGAAGCATCGTTCACTATCTTGATGATAAGGGAATCTTTCAGGTACTTATTTCGGTTTCCGATTATGTTAGTGTTGAAAAATGGTTGGAAGTTTTATGGAGAATGTCAGTGTTAAACATGTTATGAACAAATTATCCAACGTCAAATTTCTTGTTAGATCATTTCAGCTGGTTTAGCAGTGAAATTCGTACTTGTGTATTGTGGAGTGAAAAGCTTCATTAGAACTCAGAGAATGATTGTTAAGAAATATTAGGATTTTATAGTTTTGGTAATCAACAGTATAGGACAAGGACTATTCTTTATATATATTGGCCTCAACATCATAGCTTCTGGCTGACATATTCCTTTGCTTTATAACACAACACACAAATATTAAGGAGCTAGGTTCAACTATGGATGGAGTGTGAGTTAAAGCTCAGGTGCCTTATCAATGGTGAGAAGAGGAAATGTGCGATGTCTTGTGTTCTGTTTGGGTGCTATTTCGGGTTGGATGTAGTCATTAGCTTGTCTAGGCTCATTGGAACCACATAAAGCGTGTGTTGGACCCTGTCTCCAAAAAAAAGAGCTTTCTAGTTTCTACATCTTGAGAAGTGAAATTTACTTTATAACGTACCGACACATGGATTGGATCACCACCCTTAGGGGAGCTTTTTGCATTATCCCTCAGGGAAAATCGCTCTATTCCCGATCTTTGAATCCTTGAAAGCACATATTGGGATTTGGGTTTGAGAAGAAATCTAAAGGACGAGGAGACTGAGGAGGGGTCTTGTCTATCTACCATTCTTCCCCACCTTACAATGACAAATCTTGGAGACCCATGGAGGTGGATCATTGTCGAGAAAGGCTCACCCACAGCAGTCCCTTAGCCAGAAGATTACATCTTGCGATGTATAGCCAGTCGGCATCACAAAACCTTTTACTTGTGTTTATAGAAGGGTTCTTTCCCAAAGAAAGTAAAAATTTTCATATGGGAGCTTAGCCATGGAAGCATTAGTACTGCTGATGTGCTACAAAGGAAGGCTCTTTGGCTTGTTGCTTCGCCAAATTGATTTTCCCTTTGTCAAAGGGATGGAGAGACCTTGCTGCATTATTCTTTTTGGAAGATTATCCTAATGGCNAGATGTTAAAATTGTCTCC

mRNA sequence

CTTCGTTGAGAAAGAAGCGCAGTGAAAGCAGAGAAGCTTGAAAGGCCGATAGAGCAAACGAAGCTAAAAGAAAACCAAAAGGTCCTCGGAATTCGATCTTCTCCGCCGGCGATCCGCCATTTTCAGAGCTGTGAAGCTCTGAGAGAAGAGAATGAAATTAGCTCCAATAGTAATATTTCTCGTCAAAGATTCTGAGGGTTTCGCCTCAGCCATTTCCGGAGCTCTTCGCCCCAACCCTCCTTTCACGGTTACCACGCTGGATGGATGCTTCGAGTTCTCCCTGGAGGATTATGCAATCAAGGACCAGAAGGCCTCCGGAAGCATCGTTCACTATCTTGATGATAAGGGAATCTTTCAGGTACTTATTTCGGTTTCCGATTATGTTAGTGTTGAAAAATGGTTGGAAGTTTTATGGAGAATGTCAGTGTTAAACATGTTATGAACAAATTATCCAACGTCAAATTTCTTGTTAGATCATTTCAGCTGGTTTAGCAGTGAAATTCGTACTTGTGTATTGTGGAGTGAAAAGCTTCATTAGAACTCAGAGAATGATTGTTAAGAAATATTAGGATTTTATAGTTTTGGTAATCAACAGTATAGGACAAGGACTATTCTTTATATATATTGGCCTCAACATCATAGCTTCTGGCTGACATATTCCTTTGCTTTATAACACAACACACAAATATTAAGGAGCTAGGTTCAACTATGGATGGAGTGTGAGTTAAAGCTCAGGTGCCTTATCAATGGTGAGAAGAGGAAATGTGCGATGTCTTGTGTTCTGTTTGGGTGCTATTTCGGGTTGGATGTAGTCATTAGCTTGTCTAGGCTCATTGGAACCACATAAAGCGTGTGTTGGACCCTGTCTCCAAAAAAAAGAGCTTTCTAGTTTCTACATCTTGAGAAGTGAAATTTACTTTATAACGTACCGACACATGGATTGGATCACCACCCTTAGGGGAGCTTTTTGCATTATCCCTCAGGGAAAATCGCTCTATTCCCGATCTTTGAATCCTTGAAAGCACATATTGGGATTTGGGTTTGAGAAGAAATCTAAAGGACGAGGAGACTGAGGAGGGGTCTTGTCTATCTACCATTCTTCCCCACCTTACAATGACAAATCTTGGAGACCCATGGAGGTGGATCATTGTCGAGAAAGGCTCACCCACAGCAGTCCCTTAGCCAGAAGATTACATCTTGCGATGTATAGCCAGTCGGCATCACAAAACCTTTTACTTGTGTTTATAGAAGGGTTCTTTCCCAAAGAAAGTAAAAATTTTCATATGGGAGCTTAGCCATGGAAGCATTAGTACTGCTGATGTGCTACAAAGGAAGGCTCTTTGGCTTGTTGCTTCGCCAAATTGATTTTCCCTTTGTCAAAGGGATGGAGAGACCTTGCTGCATTATTCTTTTTGGAAGATTATCCTAATGGCNAGATGTTAAAATTGTCTCC

Coding sequence (CDS)

ATGAAATTAGCTCCAATAGTAATATTTCTCGTCAAAGATTCTGAGGGTTTCGCCTCAGCCATTTCCGGAGCTCTTCGCCCCAACCCTCCTTTCACGGTTACCACGCTGGATGGATGCTTCGAGTTCTCCCTGGAGGATTATGCAATCAAGGACCAGAAGGCCTCCGGAAGCATCGTTCACTATCTTGATGATAAGGGAATCTTTCAGGTACTTATTTCGGTTTCCGATTATGTTAGTGTTGAAAAATGGTTGGAAGTTTTATGGAGAATGTCAGTGTTAAACATGTTATGA

Protein sequence

MKLAPIVIFLVKDSEGFASAISGALRPNPPFTVTTLDGCFEFSLEDYAIKDQKASGSIVHYLDDKGIFQVLISVSDYVSVEKWLEVLWRMSVLNML

Homology

[Close]

BLAST of ClCG02G003080 vs. TrEMBL
Match: A0A0A0K119_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G031020 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 1.7e-25
Identity = 60/74 (81.08%), Postives = 68/74 (91.89%), Query Frame = 1


Query: 1  MKLAPIVIFLVKDSEGFASAISGALRPNPPFTVTTLDGCFEFSLEDYAIKDQKASGSIVH 60
          MKLAP VIFL++DSEGFASA+SGALR +PP TVTTLD CFEFSLEDYAIKDQKASG+IVH
Sbjct: 1  MKLAPKVIFLLRDSEGFASALSGALRLSPPSTVTTLDECFEFSLEDYAIKDQKASGNIVH 60

Query: 61 YLDDKGIFQVLISV 75
          YLDDKGI+QV + +
Sbjct: 61 YLDDKGIYQVSVLI 74

[Close]

BLAST of ClCG02G003080 vs. TrEMBL
Match: I3SJU1_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 8.6e-14
Identity = 41/78 (52.56%), Postives = 57/78 (73.08%), Query Frame = 1


Query: 1  MKLAPIVIFLVKDSEG-FASAISGALRPNPPFTVTTLDGCFEFSLEDYAIKDQKASGSIV 60
          MK+AP V+FL +D++G F SAIS AL PNP  + T L+  FE SLE Y IKD KASG+++
Sbjct: 1  MKVAPTVVFLFRDTQGGFVSAISEALHPNPSSSFTRLEDSFELSLEGYGIKDLKASGNVI 60

Query: 61 HYLDDKGIFQVLISVSDY 78
          H++D+ GI+QV + V  +
Sbjct: 61 HHVDNHGIYQVSVVVMQH 78

[Close]

BLAST of ClCG02G003080 vs. TrEMBL
Match: C6TKE9_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_09G086000 PE=2 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 2.5e-13
Identity = 40/77 (51.95%), Postives = 53/77 (68.83%), Query Frame = 1


Query: 1  MKLAPIVIFLVKDSEGFASAISGALRPNPPFTVTTLDGCFEFSLEDYAIKDQKASGSIVH 60
          MK+APIV+FL +D+EGFAS IS A RP P  + T  +  FE SLE Y IK  KASGS+ H
Sbjct: 1  MKVAPIVVFLFRDTEGFASTISQAFRPKPSSSFTRQEDSFELSLEAYGIKHLKASGSVSH 60

Query: 61 YLDDKGIFQVLISVSDY 78
          ++DD G ++V I   ++
Sbjct: 61 FVDDHGAYKVTIVAMEH 77

[Close]

BLAST of ClCG02G003080 vs. TrEMBL
Match: A0A0B2S9P4_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_031066 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 2.5e-13
Identity = 40/77 (51.95%), Postives = 53/77 (68.83%), Query Frame = 1


Query: 1  MKLAPIVIFLVKDSEGFASAISGALRPNPPFTVTTLDGCFEFSLEDYAIKDQKASGSIVH 60
          MK+APIV+FL +D+EGFAS IS A RP P  + T  +  FE SLE Y IK  KASGS+ H
Sbjct: 1  MKVAPIVVFLFRDTEGFASTISQAFRPKPSSSFTRQEDSFELSLEAYGIKHLKASGSVSH 60

Query: 61 YLDDKGIFQVLISVSDY 78
          ++DD G ++V I   ++
Sbjct: 61 FVDDHGAYKVTIVAMEH 77

[Close]

BLAST of ClCG02G003080 vs. TrEMBL
Match: I1MHU8_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_15G195100 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 7.3e-13
Identity = 40/77 (51.95%), Postives = 53/77 (68.83%), Query Frame = 1


Query: 1  MKLAPIVIFLVKDSEGFASAISGALRPNPPFTVTTLDGCFEFSLEDYAIKDQKASGSIVH 60
          MK+APIV+FL +D+EGFASAIS AL  NP  + T  +  FE SLE Y IK  K SGS+ H
Sbjct: 1  MKVAPIVVFLFRDTEGFASAISQALHANPSSSFTRQEDFFELSLEAYGIKHLKTSGSVSH 60

Query: 61 YLDDKGIFQVLISVSDY 78
          ++DD G ++V I   ++
Sbjct: 61 FVDDHGAYKVTIVAMEH 77

[Close]

BLAST of ClCG02G003080 vs. TAIR10
Match: AT3G07640.1 (AT3G07640.1 unknown protein)

HSP 1 Score: 59.7 bits (143), Expect = 1.1e-09
Identity = 27/72 (37.50%), Postives = 44/72 (61.11%), Query Frame = 1


Query: 1  MKLAPIVIFLVKDSEGFASAISGALRPNPPFTVTTLDGCFEFSLEDYAIKDQKASGSIVH 60
          MK+A  ++FL  DS+GFA+ IS  L P+P   +  L+   +  L+ Y ++  +  GSIVH
Sbjct: 1  MKVAEKIVFLWNDSDGFAATISDTLNPSPSSPLRKLEEQIQLPLDKYGVEGVETGGSIVH 60

Query: 61 YLDDKGIFQVLI 73
          ++D+  ++QV I
Sbjct: 61 FVDENEVYQVSI 72

[Close]

BLAST of ClCG02G003080 vs. NCBI nr
Match: gi|449453632|ref|XP_004144560.1| (PREDICTED: uncharacterized protein LOC101217042 [Cucumis sativus])

HSP 1 Score: 123.2 bits (308), Expect = 2.4e-25
Identity = 60/74 (81.08%), Postives = 68/74 (91.89%), Query Frame = 1


Query: 1  MKLAPIVIFLVKDSEGFASAISGALRPNPPFTVTTLDGCFEFSLEDYAIKDQKASGSIVH 60
          MKLAP VIFL++DSEGFASA+SGALR +PP TVTTLD CFEFSLEDYAIKDQKASG+IVH
Sbjct: 1  MKLAPKVIFLLRDSEGFASALSGALRLSPPSTVTTLDECFEFSLEDYAIKDQKASGNIVH 60

Query: 61 YLDDKGIFQVLISV 75
          YLDDKGI+QV + +
Sbjct: 61 YLDDKGIYQVSVLI 74

[Close]

BLAST of ClCG02G003080 vs. NCBI nr
Match: gi|659124176|ref|XP_008462021.1| (PREDICTED: uncharacterized protein LOC103500492 [Cucumis melo])

HSP 1 Score: 121.3 bits (303), Expect = 9.1e-25
Identity = 60/74 (81.08%), Postives = 67/74 (90.54%), Query Frame = 1


Query: 1  MKLAPIVIFLVKDSEGFASAISGALRPNPPFTVTTLDGCFEFSLEDYAIKDQKASGSIVH 60
          MKLAP VIFL++DSEGFASA+SGALR NPP TVTTLD  FEFSLEDYAIKDQKASG+IVH
Sbjct: 1  MKLAPKVIFLLRDSEGFASALSGALRLNPPSTVTTLDEIFEFSLEDYAIKDQKASGNIVH 60

Query: 61 YLDDKGIFQVLISV 75
          YLDDKGI+QV + +
Sbjct: 61 YLDDKGIYQVSVLI 74

[Close]

BLAST of ClCG02G003080 vs. NCBI nr
Match: gi|502086674|ref|XP_004488290.1| (PREDICTED: uncharacterized protein LOC101511378 [Cicer arietinum])

HSP 1 Score: 89.0 bits (219), Expect = 5.0e-15
Identity = 41/72 (56.94%), Postives = 55/72 (76.39%), Query Frame = 1


Query: 1  MKLAPIVIFLVKDSEGFASAISGALRPNPPFTVTTLDGCFEFSLEDYAIKDQKASGSIVH 60
          MKL+PI +F+ +DS+GFAS IS AL PNP  + T ++  FE SLEDY IKD KASG ++H
Sbjct: 1  MKLSPITLFMFRDSDGFASIISQALHPNPSSSFTPIEESFELSLEDYGIKDHKASGIVLH 60

Query: 61 YLDDKGIFQVLI 73
          Y+D+ GI++V I
Sbjct: 61 YVDNHGIYKVSI 72

[Close]

BLAST of ClCG02G003080 vs. NCBI nr
Match: gi|388504934|gb|AFK40533.1| (unknown [Lotus japonicus])

HSP 1 Score: 84.3 bits (207), Expect = 1.2e-13
Identity = 41/78 (52.56%), Postives = 57/78 (73.08%), Query Frame = 1


Query: 1  MKLAPIVIFLVKDSEG-FASAISGALRPNPPFTVTTLDGCFEFSLEDYAIKDQKASGSIV 60
          MK+AP V+FL +D++G F SAIS AL PNP  + T L+  FE SLE Y IKD KASG+++
Sbjct: 1  MKVAPTVVFLFRDTQGGFVSAISEALHPNPSSSFTRLEDSFELSLEGYGIKDLKASGNVI 60

Query: 61 HYLDDKGIFQVLISVSDY 78
          H++D+ GI+QV + V  +
Sbjct: 61 HHVDNHGIYQVSVVVMQH 78

[Close]

BLAST of ClCG02G003080 vs. NCBI nr
Match: gi|359806100|ref|NP_001241187.1| (uncharacterized protein LOC100781998 [Glycine max])

HSP 1 Score: 82.8 bits (203), Expect = 3.6e-13
Identity = 40/77 (51.95%), Postives = 53/77 (68.83%), Query Frame = 1


Query: 1  MKLAPIVIFLVKDSEGFASAISGALRPNPPFTVTTLDGCFEFSLEDYAIKDQKASGSIVH 60
          MK+APIV+FL +D+EGFAS IS A RP P  + T  +  FE SLE Y IK  KASGS+ H
Sbjct: 1  MKVAPIVVFLFRDTEGFASTISQAFRPKPSSSFTRQEDSFELSLEAYGIKHLKASGSVSH 60

Query: 61 YLDDKGIFQVLISVSDY 78
          ++DD G ++V I   ++
Sbjct: 61 FVDDHGAYKVTIVAMEH 77

The following BLAST results are available for this feature:

BLAST of ClCG02G003080 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K119_CUCSA	1.7e-25	81.08	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G031020 PE=4 SV=1	[more]
I3SJU1_LOTJA	8.6e-14	52.56	Uncharacterized protein OS=Lotus japonicus PE=2 SV=1	[more]
C6TKE9_SOYBN	2.5e-13	51.95	Uncharacterized protein OS=Glycine max GN=GLYMA_09G086000 PE=2 SV=1	[more]
A0A0B2S9P4_GLYSO	2.5e-13	51.95	Uncharacterized protein OS=Glycine soja GN=glysoja_031066 PE=4 SV=1	[more]
I1MHU8_SOYBN	7.3e-13	51.95	Uncharacterized protein OS=Glycine max GN=GLYMA_15G195100 PE=4 SV=1	[more]

BLAST of ClCG02G003080 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G07640.1	1.1e-09	37.50	unknown protein	[more]

BLAST of ClCG02G003080 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449453632\|ref\|XP_004144560.1\|	2.4e-25	81.08	PREDICTED: uncharacterized protein LOC101217042 [Cucumis sativus]	[more]
gi\|659124176\|ref\|XP_008462021.1\|	9.1e-25	81.08	PREDICTED: uncharacterized protein LOC103500492 [Cucumis melo]	[more]
gi\|502086674\|ref\|XP_004488290.1\|	5.0e-15	56.94	PREDICTED: uncharacterized protein LOC101511378 [Cicer arietinum]	[more]
gi\|388504934\|gb\|AFK40533.1\|	1.2e-13	52.56	unknown [Lotus japonicus]	[more]
gi\|359806100\|ref\|NP_001241187.1\|	3.6e-13	51.95	uncharacterized protein LOC100781998 [Glycine max]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG02G003080.1	ClCG02G003080.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR37221	FAMILY NOT NAMED	coord: 2..74 score: 3.8
None	No IPR available	PANTHER	PTHR37221:SF1	SUBFAMILY NOT NAMED	coord: 2..74 score: 3.8

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG02G003080	Cucurbita moschata (Rifu)	cmowcgB091
ClCG02G003080	Cucurbita moschata (Rifu)	cmowcgB094
ClCG02G003080	Cucurbita moschata (Rifu)	cmowcgB459
ClCG02G003080	Cucurbita moschata (Rifu)	cmowcgB483
ClCG02G003080	Wild cucumber (PI 183967)	cpiwcgB465
ClCG02G003080	Wild cucumber (PI 183967)	cpiwcgB574
ClCG02G003080	Cucumber (Chinese Long) v2	cuwcgB443
ClCG02G003080	Cucumber (Chinese Long) v2	cuwcgB546
ClCG02G003080	Melon (DHL92) v3.5.1	mewcgB092
ClCG02G003080	Melon (DHL92) v3.5.1	mewcgB195
ClCG02G003080	Watermelon (97103) v1	wcgwmB198
ClCG02G003080	Cucurbita pepo (Zucchini)	cpewcgB233
ClCG02G003080	Cucurbita pepo (Zucchini)	cpewcgB267
ClCG02G003080	Cucurbita pepo (Zucchini)	cpewcgB593
ClCG02G003080	Bottle gourd (USVL1VR-Ls)	lsiwcgB058
ClCG02G003080	Bottle gourd (USVL1VR-Ls)	lsiwcgB097
ClCG02G003080	Cucumber (Gy14) v2	cgybwcgB409
ClCG02G003080	Cucumber (Gy14) v2	cgybwcgB506
ClCG02G003080	Melon (DHL92) v3.6.1	medwcgB094
ClCG02G003080	Melon (DHL92) v3.6.1	medwcgB190
ClCG02G003080	Silver-seed gourd	carwcgB0194
ClCG02G003080	Silver-seed gourd	carwcgB0336
ClCG02G003080	Silver-seed gourd	carwcgB0782
ClCG02G003080	Silver-seed gourd	carwcgB1037
ClCG02G003080	Silver-seed gourd	carwcgB1038
ClCG02G003080	Cucumber (Chinese Long) v3	cucwcgB464
ClCG02G003080	Cucumber (Chinese Long) v3	cucwcgB571
ClCG02G003080	Watermelon (97103) v2	wcgwmbB138
ClCG02G003080	Wax gourd	wcgwgoB266
ClCG02G003080	Wax gourd	wcgwgoB305
ClCG02G003080	Watermelon (Charleston Gray)	wcgwcgB047
ClCG02G003080	Cucumber (Gy14) v1	cgywcgB130
ClCG02G003080	Cucumber (Gy14) v1	cgywcgB185
ClCG02G003080	Cucurbita maxima (Rimu)	cmawcgB097
ClCG02G003080	Cucurbita maxima (Rimu)	cmawcgB103
ClCG02G003080	Cucurbita maxima (Rimu)	cmawcgB460
ClCG02G003080	Cucurbita maxima (Rimu)	cmawcgB483