ClCG02G000440.1 (mRNA) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG02G000440.1
Type	mRNA
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Unknown protein
Location	CG_Chr02 : 496617 .. 497142 (-)
Sequence length	434

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAGTCCCATCAGAAGTACCTGCCAGTAATTGCAACAAACGGAGAAAGATGCTGGGGGTTCAGAATTCTGATGTGCTCTCACTCAAGCAAAATGCCATTGCTGACAGGCAAGCAGCGAAGTGCTTCCAGCAAATTGAGTGGGCCATCAAGCATGTGCTTTGCCCTTGCCTTTCTAAATCACATGTAAATCTCTGCAGTTACTGATACTATTATTAAGTTGTAAAGTATTGGACACTTGTCATGATTATTAATAAGGTGTATTATGACATTTACAGGCGTTCAGTTCTGATGCTCCTATTGGACATAAGAGACTTGATCCACACATCATCAATGGATGTGATTGTGCGTCAGGTTCACTTAATCTAATCTGCTTTATTGATTTTCTTGTATCAAATCAAGTCATACCAAATTTTGGATTGTGAATGTTTGATTGATGAGAAAGTCAGGTATATTATAATTAGAGTTTTCAGATGTAGAATGTGGCCTTTCATTCTGAATATAATGATACTGAAATGCATTTGCATGT

mRNA sequence

GAAGTCCCATCAGAAGTACCTGCCAGTAATTGCAACAAACGGAGAAAGATGCTGGGGGTTCAGAATTCTGATGTGCTCTCACTCAAGCAAAATGCCATTGCTGACAGGCAAGCAGCGAAGTGCTTCCAGCAAATTGAGTGGGCCATCAAGCATGTGCTTTGCCCTTGCCTTTCTAAATCACATGCGTTCAGTTCTGATGCTCCTATTGGACATAAGAGACTTGATCCACACATCATCAATGGATGTGATTGTGCGTCAGGTTCACTTAATCTAATCTGCTTTATTGATTTTCTTGTATCAAATCAAGTCATACCAAATTTTGGATTGTGAATGTTTGATTGATGAGAAAGTCAGGTATATTATAATTAGAGTTTTCAGATGTAGAATGTGGCCTTTCATTCTGAATATAATGATACTGAAATGCATTTGCATGT

Coding sequence (CDS)

GAAGTCCCATCAGAAGTACCTGCCAGTAATTGCAACAAACGGAGAAAGATGCTGGGGGTTCAGAATTCTGATGTGCTCTCACTCAAGCAAAATGCCATTGCTGACAGGCAAGCAGCGAAGTGCTTCCAGCAAATTGAGTGGGCCATCAAGCATGTGCTTTGCCCTTGCCTTTCTAAATCACATGCGTTCAGTTCTGATGCTCCTATTGGACATAAGAGACTTGATCCACACATCATCAATGGATGTGATTGTGCGTCAGGTTCACTTAATCTAATCTGCTTTATTGATTTTCTTGTATCAAATCAAGTCATACCAAATTTTGGATTGTGA

Protein sequence

EVPSEVPASNCNKRRKMLGVQNSDVLSLKQNAIADRQAAKCFQQIEWAIKHVLCPCLSKSHAFSSDAPIGHKRLDPHIINGCDCASGSLNLICFIDFLVSNQVIPNFGL

Homology

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BLAST of ClCG02G000440.1 vs. NCBI nr
Match: gi|659121929|ref|XP_008460886.1| (PREDICTED: uncharacterized protein LOC103499627 [Cucumis melo])

HSP 1 Score: 135.2 bits (339), Expect = 6.9e-29
Identity = 64/74 (86.49%), Postives = 68/74 (91.89%), Query Frame = 1


Query: 1   EVPSEVPASNCNKRRKMLGVQNSDVLSLKQNAIADRQAAKCFQQIEWAIKHVLCPCLSKS 60
           +VPSEVPASNCN  RKMLG+QNSDVLS K NAIADRQA KCFQQIEWAIKHVLCPCLSKS
Sbjct: 243 KVPSEVPASNCNYYRKMLGIQNSDVLSFKLNAIADRQAGKCFQQIEWAIKHVLCPCLSKS 302

Query: 61  HAFSSDAPIGHKRL 75
           +AF+SDAPIGH RL
Sbjct: 303 YAFNSDAPIGHGRL 316

The following BLAST results are available for this feature:

BLAST of ClCG02G000440.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659121929\|ref\|XP_008460886.1\|	6.9e-29	86.49	PREDICTED: uncharacterized protein LOC103499627 [Cucumis melo]	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
ClCG02G000440	ClCG02G000440	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
ClCG02G000440.1	ClCG02G000440.1-protein	polypeptide

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG02G000440.1.three_prime_UTR1	ClCG02G000440.1.three_prime_UTR1	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG02G000440.1.cds2	ClCG02G000440.1.cds2	CDS
ClCG02G000440.1.cds1	ClCG02G000440.1.cds1	CDS