ClCG02G000440 (gene) Watermelon (Charleston Gray)

Overview
NameClCG02G000440
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionUnknown protein
LocationCG_Chr02 : 496617 .. 497142 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GAAGTCCCATCAGAAGTACCTGCCAGTAATTGCAACAAACGGAGAAAGATGCTGGGGGTTCAGAATTCTGATGTGCTCTCACTCAAGCAAAATGCCATTGCTGACAGGCAAGCAGCGAAGTGCTTCCAGCAAATTGAGTGGGCCATCAAGCATGTGCTTTGCCCTTGCCTTTCTAAATCACATGTAAATCTCTGCAGTTACTGATACTATTATTAAGTTGTAAAGTATTGGACACTTGTCATGATTATTAATAAGGTGTATTATGACATTTACAGGCGTTCAGTTCTGATGCTCCTATTGGACATAAGAGACTTGATCCACACATCATCAATGGATGTGATTGTGCGTCAGGTTCACTTAATCTAATCTGCTTTATTGATTTTCTTGTATCAAATCAAGTCATACCAAATTTTGGATTGTGAATGTTTGATTGATGAGAAAGTCAGGTATATTATAATTAGAGTTTTCAGATGTAGAATGTGGCCTTTCATTCTGAATATAATGATACTGAAATGCATTTGCATGT

mRNA sequence

GAAGTCCCATCAGAAGTACCTGCCAGTAATTGCAACAAACGGAGAAAGATGCTGGGGGTTCAGAATTCTGATGTGCTCTCACTCAAGCAAAATGCCATTGCTGACAGGCAAGCAGCGAAGTGCTTCCAGCAAATTGAGTGGGCCATCAAGCATGTGCTTTGCCCTTGCCTTTCTAAATCACATGCGTTCAGTTCTGATGCTCCTATTGGACATAAGAGACTTGATCCACACATCATCAATGGATGTGATTGTGCGTCAGGTTCACTTAATCTAATCTGCTTTATTGATTTTCTTGTATCAAATCAAGTCATACCAAATTTTGGATTGTGAATGTTTGATTGATGAGAAAGTCAGGTATATTATAATTAGAGTTTTCAGATGTAGAATGTGGCCTTTCATTCTGAATATAATGATACTGAAATGCATTTGCATGT

Coding sequence (CDS)

GAAGTCCCATCAGAAGTACCTGCCAGTAATTGCAACAAACGGAGAAAGATGCTGGGGGTTCAGAATTCTGATGTGCTCTCACTCAAGCAAAATGCCATTGCTGACAGGCAAGCAGCGAAGTGCTTCCAGCAAATTGAGTGGGCCATCAAGCATGTGCTTTGCCCTTGCCTTTCTAAATCACATGCGTTCAGTTCTGATGCTCCTATTGGACATAAGAGACTTGATCCACACATCATCAATGGATGTGATTGTGCGTCAGGTTCACTTAATCTAATCTGCTTTATTGATTTTCTTGTATCAAATCAAGTCATACCAAATTTTGGATTGTGA

Protein sequence

EVPSEVPASNCNKRRKMLGVQNSDVLSLKQNAIADRQAAKCFQQIEWAIKHVLCPCLSKSHAFSSDAPIGHKRLDPHIINGCDCASGSLNLICFIDFLVSNQVIPNFGL
Homology
[Close]
BLAST of ClCG02G000440 vs. NCBI nr
Match: gi|659121929|ref|XP_008460886.1| (PREDICTED: uncharacterized protein LOC103499627 [Cucumis melo])

HSP 1 Score: 135.2 bits (339), Expect = 6.9e-29
Identity = 64/74 (86.49%), Postives = 68/74 (91.89%), Query Frame = 1 

Query: 1   EVPSEVPASNCNKRRKMLGVQNSDVLSLKQNAIADRQAAKCFQQIEWAIKHVLCPCLSKS 60
           +VPSEVPASNCN  RKMLG+QNSDVLS K NAIADRQA KCFQQIEWAIKHVLCPCLSKS
Sbjct: 243 KVPSEVPASNCNYYRKMLGIQNSDVLSFKLNAIADRQAGKCFQQIEWAIKHVLCPCLSKS 302

Query: 61  HAFSSDAPIGHKRL 75
           +AF+SDAPIGH RL
Sbjct: 303 YAFNSDAPIGHGRL 316

The following BLAST results are available for this feature:
BLAST of ClCG02G000440 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659121929|ref|XP_008460886.1|6.9e-2986.49PREDICTED: uncharacterized protein LOC103499627 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG02G000440.1ClCG02G000440.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
ClCG02G000440Bhi10G001344Wax gourdwcgwgoB303
ClCG02G000440Cp4.1LG05g10510Cucurbita pepo (Zucchini)cpewcgB647
ClCG02G000440Carg11704Silver-seed gourdcarwcgB1030
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG02G000440Cucurbita maxima (Rimu)cmawcgB482
ClCG02G000440Cucurbita maxima (Rimu)cmawcgB544
ClCG02G000440Cucurbita moschata (Rifu)cmowcgB480
ClCG02G000440Cucurbita moschata (Rifu)cmowcgB540
ClCG02G000440Wild cucumber (PI 183967)cpiwcgB096
ClCG02G000440Wild cucumber (PI 183967)cpiwcgB133
ClCG02G000440Cucumber (Chinese Long) v2cuwcgB126
ClCG02G000440Melon (DHL92) v3.5.1mewcgB091
ClCG02G000440Watermelon (97103) v1wcgwmB206
ClCG02G000440Cucurbita pepo (Zucchini)cpewcgB268
ClCG02G000440Cucurbita pepo (Zucchini)cpewcgB274
ClCG02G000440Bottle gourd (USVL1VR-Ls)lsiwcgB056
ClCG02G000440Cucumber (Gy14) v2cgybwcgB121
ClCG02G000440Melon (DHL92) v3.6.1medwcgB089
ClCG02G000440Silver-seed gourdcarwcgB0694
ClCG02G000440Cucumber (Chinese Long) v3cucwcgB139
ClCG02G000440Watermelon (97103) v2wcgwmbB138
ClCG02G000440Cucumber (Gy14) v1cgywcgB401