ClCG01G015300.1 (mRNA) Watermelon (Charleston Gray)

Overview
NameClCG01G015300.1
TypemRNA
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionUnknown protein
LocationCG_Chr01 : 29538831 .. 29544540 (+)
Sequence length504
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTCTTATAGGAGGCATTGCAGGAAGCGTTACTGGGAGCTTGCAAATTCCGGTGAATTTGGGGGAAAAAATTATCCATGATCTAGCTAATATTGCAGTGAGTCATTACGCCAAGGTGCAAGGGGTTGAAGTGAGCTTGGTAGGTGTGATAGATGCTACTGTTCAGGATGGGCCTAATGGAAAAATATATAGTCTTAAGTTGAAGTTGAAAATCGTTGCCGGTACTGCTCATCTTTATAAGATCTTTTTATTTGAATTGCTTGTTCCGTCCTTGGGCATTCCATACGTCGTGTCTATCAAATATCTCGAAGATGTCGGTATCTAAAAATCACACACACACACACACACACCATGTATGATGATGCTTCCTTTTGCATCATTCTCACCTTTTATCTATCAATAAATATATGAAAACCTACGTTGTTTGAAATATTTTTATACATATCCTTCCTTTGCCTCTTTCTCCATATTTGAAAATGCATGCCTAAGTTTCAATTCTTCTTTCCTACGTTTTAACACGTTTTTCCATTATATATACTTCTTCTAGACACGCTACTCACTCCACTCATGTGAATATATACATGATTAAAAATATTTGTTGATATATAATGAACTTACAATAATATTTTTAGTGAAAAAAGCAAGAATAATTAGGCTGCCTAGCTATGCATACATTATCAACTTCATTAACACATTTAAAGCAAAAGTTTGAAACTTCTCCCTGGGCAATTAATTTATTATCGACCAATTGTATAATTGAAGAACGTGGTACAACAATAACAGAATTACTAAATCAAAAAGAAAATATTATTGGGACTTTAACATATATTTAGTCTAAAATGACTACCTTATAAACAACATTATTCTTCTTAATTCTACAATTCTATCAAAGTAGCAAAAACATGAATCATTTGGTGATTATTTTTTTTTCTAAATAAGTAAAGAAAAATAATAGAGAAGTAAGAGAGAAGATAGAAAATTGCTCATATTGGGGAAAGTTGTACTACAATATATTCACTTGAGTCTAGGATCTCACTCTAATATTTCATTCATTCAACTCTACACTTAACAAAGTTTATTTTTAAAATAAAACTTGAACGAAAGGTCTTAAATGTTGTTTCATTTATAGAAAAGTTTTAGGGTTTAATTAAGCAATTATTAGTTAATATATCGATTGATCCCACTTGTAAAATTCTGACAGTATAAATAACACACTGAGCAAGTAACTTCTTATATGTATGAAAGATTTTCATTTCCCTCGAGTATGTGAAAATAAAGGGCTTACATATATGTTGGATGTGTAATATCATATAAGATGTAATATCTAATAAGGACCTTTCTGGTGTCACTTCTAAAAGATTCAATCAAATAGTATTTATAATTACCGATCTCTACAACTATTATTACTAAAGCGTAGTACTAACGGCAAAACTGGAATGATTCGTAGGGAAGTGCGAAGATTAGTTTCTCAAAGTTAATTTTTTTTGCTAAAGCAAGCATGGGAAAATAAAATGCGGAATGTAAATTGCAAGAAAAATAAAAGCAGCATATCCTAGTTTTTAGAGATGTCTACAATTGCTTGCTTGATTATAGATTCATCGAATTAGGTTTTATATTGTCTAAGCTTAGCCAACTCACCAAGAAAAGCTAAGTGAGAGTCCAATTTATCAAATTAGTCAATTTAATTAGATGAAAAAACATCCTAATGAATTTAGACTAACCGCATTACAAATGAGGATTACACAAAGGTGAATATCAACCAGGAATTGTCTAAATCAATATTCATCATGATTCTTCCTAGGTTGATAGAGCAATGCTTTTCATCATAGACAATAAATTACAAGTCTAACTAACATTTTGCTACATTTGATCAAATTACAATTTTATGTCACGTATTATAATTTATTGCCTAGCTAATGATCTTATATCCTCAAACAGAAATACAACCACAAACATGTAAAGACAGTAAAAGAATCCGAAGACAACAGAAACAATCAAGATGAAAAGTTTCGCACAAGGTTACAATAGGAGAAAACCTTAAAAACTAGGAATTGAGAATCCTTGCCTTCCCATTGAGATAATAAAGCTCAAACCCGCCATCTTCAACCCGCAACTACGGAGAAATATTGAATTCAAAACCTAACACTAATGTTGTAGATGGATAGAGGGGGAAAAACAAAGAAAACAAGTGTTCATTTACCCAAAACGGCCACTCGAATTCAAAGATATGACCTAAAAATCGATGAGTAGTTTTTATATGGCGAGATAGCACCGCGACGCTACGAAAAAATACAGAATTTGTATCCATGACGAGGTCCTTTAGGGGTGTTTTAGTTTTTTTGGCTTCCACTTGTCCTAATTACTTCGTTAGAACTCTAAATTGATCCGTTTTAGCTTCGTTTTCTTCCTAACGCTCAATTATATCTCCAAATTGCTCGATACCTACAAAATAACATATTTAAGCACATTAAATATTATCAACAGGCAAGATTAAAGATATTAAGATAGCACATTTAGGCACTACAACAAAAATAGGCTTTTATGACTAAAAGACAGTCATTACCACATTTCTTGACTTTTTTTTTTAGTCATTTAATCGCCCATCATCTAAAGAGTATAGATGACACATGAGAAATCAGCCATCATTGTTAGTTTCATGACTTTTAAACACAGTCAACAAAGAACATGTATTGACATTTATTATAAGTCATGGAAACCATTTTTCGTGACAATTTTCTACAGTCATTAAATAATGAAAATGTTGACTTTTTCTGTCAAATAAAGAGTTATCTTGACATTAAAATTCTGTCATCTAGCAACAAATAATGACACATCTAAAGTGTGAATAATACATTAATTATGACATTTTTTTAAGGTCATGGAATTACATACATTGTCACTTATTTATAGTCATAGAAGTCTGATAGATGACTTTTGTCAAATATCAAAGAAACCATTTCAATGATACACGTTATTACACCTATATTTCATACATGTTATTATACCCGTGTTTCCTTCAGTTTCAACACAAAATATGTACACAAACATAAAAAGTAACTTTCATATATAATAATATACTTTCTATCATTACTACAAGGAAACTAACAACAACAACACTAGTAACCATATTTTGGGTACATCATTTACAAATTTAGTATTTAGAACTAAATGTTGGCATAATCCCAAAAAAAATATATACAACACCTATTTAAATATCTTGGTTGGTGGGTTTCCTTACTTCAATGGCCTTGTCCAGGAACCTTGTAAAAAAAAACATTCATTTCAGAATTTAACTCAATATATAAAGGTGAACAATAATAACAATATGCAGGTTATATATATGTTGATCGTACTGTGACAATATCATGTTGGTATATACATTTGCACTGAAAACCCCACTTTAGTCATACAAGTAAGCTTCAATGAACACTTTCAAACAAAAATTATTCATAGAATCACAATATAACCACATAAATACGCTCAAAATCACATTATAATCTCACTTTTCAACCTTAATAACATGGATAACCTCCAAATTTAACTTATACACTAGTCTACTAGAAAGAATAAGAGTTAATTGAAAAATTTCTTCGTGTAGGGGCGGGGGAACAAGTGAAACATAGTATAGTAGGAGCAAAACAAATATATAATTATTGTAACTTGTCCAACCTTTTAGGAGTATAACTACTAAAAAGTAGAAATACTCATACATTAGTCTATTAGAAAGAATAAGGGTTAAATGAAAAACTTCTTCATTTAGGGAAGGACAAGTGAAACATAATACAAAAAATATTTATCACAAAAAAAAAAAAGATATCTCCTTAGAACTCAAGCACATTAATCCAATACGAGCAAAACAAATATATAACTTAAATACTCTCAAACCAACATAAAAAGTATCTAAAAGTTTTTCAAGAAACAATTTAACTCCCCAAACAACCAAAATAGTTCATATGTGCACTTTGATTATCAAAACCAATTAAAAAGTACGTAAAAAATGTCTAAGTGACACATTATCAAAATCAACTCAAGCATATAATAAATGGATGAATTAGCTACCATAATTGCAGGATAGCCACACATAATATACATGCATTTATAAACAGAGTTTGAACTTCTAAAAAATACCTAAGTATTTTAAGGTCTATCCCCTTCCTGTTCTTGCCCCAACAATTTTTTAGTGACCTCTAAACTATGACTTCTAAACTCACAACTATGACCTCTAAACTCATAACCAACCAAAGAATGGCTAAAAAGTGTCTAAATGACACTTTGACTCCAAAAACAACTCCATAATGCACAACTATGACCTCTAAACTGAAAACCAACCAAAGAATGACTAAAAAGTGTCTAGATGACACTTTGACTCCAAAAACAACTCCATAAATGCATGAATTGGCTACCGTAACTGCAGGATAGCCACAACACATTATAACTTAAACATATAAAAAAAGGTACTAAATGTATGAACTGGCTACCGTAACTGCAGGATAGCCACAACACATTATAACTTAAACATATAAAAAAAGGTACTAAATGTATGAACTGGCTACCGTAACTGCAGGATAGCCACAACCATAATTTTGAACTTTAATTTAAAAATAAATAAATACCTAAGAAGTTAAAGGTCCATCGCCTCCATGTCCTTGCCCCAACAATTTTTGAACATCGGTCCATCTATCTTCCTATTTGACAAGTTGATTCATTAACTTCTCATTTTGCTCCACCATCTTTGCGTACTTTTCAATGAGTTCATATCCTAGATAGGTTACTATCATAGCTTGAACTCATTCTCCTTAAACCTAGTACTAAGAAAAATTAGGAATGTTATTTAGGTCGTAATCGTAGTCGAGGCATAGTTATAAATTTTTTAACAAGAAACAAATAGTAGCATGATTGTAATTGTAATATTTCAAGGAAAATACTCACTTGTATAGCCTTCCTCGAGGGCTTTCTCTATCACACACACGGGACTTATTCACAATAATCTAACTAGAATCCAAATCCCCAAATTCCCTTTATTAATAACCACTCTACTGTACTAATATCCTAATAGCATTCCCAATGCTAGGTTGCTAGATGACTAACGGGTTCATAGGCTGGTTTGGATTGGATTGAAAAATACTTCAAATGGGTTGTTCCTGTTCCAATTTTCATTTTGTCCTAGCAAAGTAACCTTTTCACAACTTTTTCCACTTTATTATGAAGAAGAATATCAACTTTCCTACATCAAAAGACGTAGCTCTTTAAAATATTTAACTAAGAACGTTCCAACACTTCAAAATAATTGATTCTCTGGACATGAAAATAAATCGATGAAACATCAATTCCAAAATCATCACAGTTACAAATACGTTAAACGTTAACAATTATTGCAACAAACGATGTCGTGGATCAAAATTAGATGTCAAAATACACATTAAGAATAGAATTATCTAACATGGCCAAATAACACTCACCACTTTTCAAATCGCCAAAGAAATAAAGAATTATCAACAGATGCCCAAGCTCTTCGTATTTCAGGAAATATTCCACATAAGGCAGTTCCTTCCCCTCCAGCAGCATTATATCTTTCTATAAGCACTGGAGGTAACTCCCAAGTATCCACCACTTCCACTAGAGGAGGCAGCAACACCGGCGTCTTGAGGCAGCAGCAGCACCGGCGTCTGGCGGCAGCAACAGGCCGCGTCGGGCAGAGGAGCGGTTGA

mRNA sequence

ATGACTCTTATAGGAGGCATTGCAGGAAGCGTTACTGGGAGCTTGCAAATTCCGGTGAATTTGGGGGAAAAAATTATCCATGATCTAGCTAATATTGCAGTGAGTCATTACGCCAAGGTGCAAGGGGTTGAAGTGAGCTTGGTAGGTGTGATAGATGCTACTGTTCAGGATGGGCCTAATGGAAAAATATATAGTCTTAAGTTGAAGTTGAAAATCGTTGCCGGTACTGCTCATCTTTATAAGATCTTTTTATTTGAATTGCTTGTTCCGTCCTTGGGCATTCCATACGTCGTGTCTATCAAATATCTCGAAGATGTCGGAAATATTCCACATAAGGCAGTTCCTTCCCCTCCAGCAGCATTATATCTTTCTATAAGCACTGGAGGTAACTCCCAAGTATCCACCACTTCCACTAGAGGAGGCAGCAACACCGGCGTCTTGAGGCAGCAGCAGCACCGGCGTCTGGCGGCAGCAACAGGCCGCGTCGGGCAGAGGAGCGGTTGA

Coding sequence (CDS)

ATGACTCTTATAGGAGGCATTGCAGGAAGCGTTACTGGGAGCTTGCAAATTCCGGTGAATTTGGGGGAAAAAATTATCCATGATCTAGCTAATATTGCAGTGAGTCATTACGCCAAGGTGCAAGGGGTTGAAGTGAGCTTGGTAGGTGTGATAGATGCTACTGTTCAGGATGGGCCTAATGGAAAAATATATAGTCTTAAGTTGAAGTTGAAAATCGTTGCCGGTACTGCTCATCTTTATAAGATCTTTTTATTTGAATTGCTTGTTCCGTCCTTGGGCATTCCATACGTCGTGTCTATCAAATATCTCGAAGATGTCGGAAATATTCCACATAAGGCAGTTCCTTCCCCTCCAGCAGCATTATATCTTTCTATAAGCACTGGAGGTAACTCCCAAGTATCCACCACTTCCACTAGAGGAGGCAGCAACACCGGCGTCTTGAGGCAGCAGCAGCACCGGCGTCTGGCGGCAGCAACAGGCCGCGTCGGGCAGAGGAGCGGTTGA

Protein sequence

MTLIGGIAGSVTGSLQIPVNLGEKIIHDLANIAVSHYAKVQGVEVSLVGVIDATVQDGPNGKIYSLKLKLKIVAGTAHLYKIFLFELLVPSLGIPYVVSIKYLEDVGNIPHKAVPSPPAALYLSISTGGNSQVSTTSTRGGSNTGVLRQQQHRRLAAATGRVGQRSG
Homology
[Close]
BLAST of ClCG01G015300.1 vs. TrEMBL
Match: A0A0A0KKQ8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G483230 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 7.7e-10
Identity = 42/107 (39.25%), Postives = 62/107 (57.94%), Query Frame = 1 

Query: 1   MTLIGGIAGSVTGSLQIPVNLGEKIIHDL-ANIAVSHYAKVQGVEVSLVGVIDATVQDGP 60
           MTL  GI G   G   +P++L +  + DL     + H   V  ++ +  G ID +++ G 
Sbjct: 1   MTLGIGIGG---GLQIVPLDLSDNTLCDLLVQHVIKHCQSVLQIDATFEGFIDGSIEIGL 60

Query: 61  NGKIYSLKLKLKIVAGTAHLYKIFLFELLVPSLGIPYVVSIKYLEDV 107
           NGK Y LKLKLK+  G A++ KI L +L  P +G P VVS +YLE++
Sbjct: 61  NGKTYILKLKLKVRIGDAYVVKIVLVKLFFPFVGFPSVVSFEYLEEI 104

[Close]
BLAST of ClCG01G015300.1 vs. TrEMBL
Match: A0A0A0KFK8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G483240 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 7.7e-10
Identity = 38/98 (38.78%), Postives = 61/98 (62.24%), Query Frame = 1 

Query: 11  VTGSLQI-PVNLGEKIIHDL-ANIAVSHYAKVQGVEVSLVGVIDATVQDGPNGKIYSLKL 70
           ++G LQI P++L +  + DL     + H   V  ++ +  G+ID  ++ G NGK Y+LKL
Sbjct: 7   ISGGLQIVPLDLSDNTLCDLLVQHVMKHCQSVLQIDATFEGLIDGKIEIGLNGKTYTLKL 66

Query: 71  KLKIVAGTAHLYKIFLFELLVPSLGIPYVVSIKYLEDV 107
           K+K+  G A++ KI L +L  P +G P VVS +YLE++
Sbjct: 67  KIKVRIGDAYVVKIVLVKLFFPFVGFPSVVSFEYLEEI 104

[Close]
BLAST of ClCG01G015300.1 vs. TrEMBL
Match: A0A0A0KFL5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G483250 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 6.5e-09
Identity = 38/96 (39.58%), Postives = 58/96 (60.42%), Query Frame = 1 

Query: 11  VTGSLQI-PVNLGEKIIHDL-ANIAVSHYAKVQGVEVSLVGVIDATVQDGPNGKIYSLKL 70
           + GSLQI P++L +  + DL     + H   V  ++ +  G ID +++ G NGK YS KL
Sbjct: 7   IGGSLQIVPMDLSDNTLCDLLVQHVMKHCQTVLQIDATYEGFIDGSIEIGMNGKTYSFKL 66

Query: 71  KLKIVAGTAHLYKIFLFELLVPSLGIPYVVSIKYLE 105
           KLKI  G A++ K  L ++  P +G+P +VS +YLE
Sbjct: 67  KLKIKVGDAYVIKPVLVKIFFPFIGLPSIVSFEYLE 102

[Close]
BLAST of ClCG01G015300.1 vs. NCBI nr
Match: gi|700193132|gb|KGN48336.1| (hypothetical protein Csa_6G483230 [Cucumis sativus])

HSP 1 Score: 72.0 bits (175), Expect = 1.1e-09
Identity = 42/107 (39.25%), Postives = 62/107 (57.94%), Query Frame = 1 

Query: 1   MTLIGGIAGSVTGSLQIPVNLGEKIIHDL-ANIAVSHYAKVQGVEVSLVGVIDATVQDGP 60
           MTL  GI G   G   +P++L +  + DL     + H   V  ++ +  G ID +++ G 
Sbjct: 1   MTLGIGIGG---GLQIVPLDLSDNTLCDLLVQHVIKHCQSVLQIDATFEGFIDGSIEIGL 60

Query: 61  NGKIYSLKLKLKIVAGTAHLYKIFLFELLVPSLGIPYVVSIKYLEDV 107
           NGK Y LKLKLK+  G A++ KI L +L  P +G P VVS +YLE++
Sbjct: 61  NGKTYILKLKLKVRIGDAYVVKIVLVKLFFPFVGFPSVVSFEYLEEI 104

[Close]
BLAST of ClCG01G015300.1 vs. NCBI nr
Match: gi|700193134|gb|KGN48338.1| (hypothetical protein Csa_6G483240 [Cucumis sativus])

HSP 1 Score: 72.0 bits (175), Expect = 1.1e-09
Identity = 38/98 (38.78%), Postives = 61/98 (62.24%), Query Frame = 1 

Query: 11  VTGSLQI-PVNLGEKIIHDL-ANIAVSHYAKVQGVEVSLVGVIDATVQDGPNGKIYSLKL 70
           ++G LQI P++L +  + DL     + H   V  ++ +  G+ID  ++ G NGK Y+LKL
Sbjct: 7   ISGGLQIVPLDLSDNTLCDLLVQHVMKHCQSVLQIDATFEGLIDGKIEIGLNGKTYTLKL 66

Query: 71  KLKIVAGTAHLYKIFLFELLVPSLGIPYVVSIKYLEDV 107
           K+K+  G A++ KI L +L  P +G P VVS +YLE++
Sbjct: 67  KIKVRIGDAYVVKIVLVKLFFPFVGFPSVVSFEYLEEI 104

[Close]
BLAST of ClCG01G015300.1 vs. NCBI nr
Match: gi|700193139|gb|KGN48343.1| (hypothetical protein Csa_6G483250 [Cucumis sativus])

HSP 1 Score: 68.9 bits (167), Expect = 9.3e-09
Identity = 38/96 (39.58%), Postives = 58/96 (60.42%), Query Frame = 1 

Query: 11  VTGSLQI-PVNLGEKIIHDL-ANIAVSHYAKVQGVEVSLVGVIDATVQDGPNGKIYSLKL 70
           + GSLQI P++L +  + DL     + H   V  ++ +  G ID +++ G NGK YS KL
Sbjct: 7   IGGSLQIVPMDLSDNTLCDLLVQHVMKHCQTVLQIDATYEGFIDGSIEIGMNGKTYSFKL 66

Query: 71  KLKIVAGTAHLYKIFLFELLVPSLGIPYVVSIKYLE 105
           KLKI  G A++ K  L ++  P +G+P +VS +YLE
Sbjct: 67  KLKIKVGDAYVIKPVLVKIFFPFIGLPSIVSFEYLE 102

The following BLAST results are available for this feature:
BLAST of ClCG01G015300.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KKQ8_CUCSA7.7e-1039.25Uncharacterized protein OS=Cucumis sativus GN=Csa_6G483230 PE=4 SV=1[more]
A0A0A0KFK8_CUCSA7.7e-1038.78Uncharacterized protein OS=Cucumis sativus GN=Csa_6G483240 PE=4 SV=1[more]
A0A0A0KFL5_CUCSA6.5e-0939.58Uncharacterized protein OS=Cucumis sativus GN=Csa_6G483250 PE=4 SV=1[more]
BLAST of ClCG01G015300.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700193132|gb|KGN48336.1|1.1e-0939.25hypothetical protein Csa_6G483230 [Cucumis sativus][more]
gi|700193134|gb|KGN48338.1|1.1e-0938.78hypothetical protein Csa_6G483240 [Cucumis sativus][more]
gi|700193139|gb|KGN48343.1|9.3e-0939.58hypothetical protein Csa_6G483250 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
ClCG01G015300ClCG01G015300gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
ClCG01G015300.1ClCG01G015300.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
ClCG01G015300.1.cds1ClCG01G015300.1.cds1CDS
ClCG01G015300.1.cds2ClCG01G015300.1.cds2CDS