ClCG01G015300 (gene) Watermelon (Charleston Gray)

Overview
NameClCG01G015300
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionUnknown protein
LocationCG_Chr01 : 29538831 .. 29544540 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTCTTATAGGAGGCATTGCAGGAAGCGTTACTGGGAGCTTGCAAATTCCGGTGAATTTGGGGGAAAAAATTATCCATGATCTAGCTAATATTGCAGTGAGTCATTACGCCAAGGTGCAAGGGGTTGAAGTGAGCTTGGTAGGTGTGATAGATGCTACTGTTCAGGATGGGCCTAATGGAAAAATATATAGTCTTAAGTTGAAGTTGAAAATCGTTGCCGGTACTGCTCATCTTTATAAGATCTTTTTATTTGAATTGCTTGTTCCGTCCTTGGGCATTCCATACGTCGTGTCTATCAAATATCTCGAAGATGTCGGTATCTAAAAATCACACACACACACACACACACCATGTATGATGATGCTTCCTTTTGCATCATTCTCACCTTTTATCTATCAATAAATATATGAAAACCTACGTTGTTTGAAATATTTTTATACATATCCTTCCTTTGCCTCTTTCTCCATATTTGAAAATGCATGCCTAAGTTTCAATTCTTCTTTCCTACGTTTTAACACGTTTTTCCATTATATATACTTCTTCTAGACACGCTACTCACTCCACTCATGTGAATATATACATGATTAAAAATATTTGTTGATATATAATGAACTTACAATAATATTTTTAGTGAAAAAAGCAAGAATAATTAGGCTGCCTAGCTATGCATACATTATCAACTTCATTAACACATTTAAAGCAAAAGTTTGAAACTTCTCCCTGGGCAATTAATTTATTATCGACCAATTGTATAATTGAAGAACGTGGTACAACAATAACAGAATTACTAAATCAAAAAGAAAATATTATTGGGACTTTAACATATATTTAGTCTAAAATGACTACCTTATAAACAACATTATTCTTCTTAATTCTACAATTCTATCAAAGTAGCAAAAACATGAATCATTTGGTGATTATTTTTTTTTCTAAATAAGTAAAGAAAAATAATAGAGAAGTAAGAGAGAAGATAGAAAATTGCTCATATTGGGGAAAGTTGTACTACAATATATTCACTTGAGTCTAGGATCTCACTCTAATATTTCATTCATTCAACTCTACACTTAACAAAGTTTATTTTTAAAATAAAACTTGAACGAAAGGTCTTAAATGTTGTTTCATTTATAGAAAAGTTTTAGGGTTTAATTAAGCAATTATTAGTTAATATATCGATTGATCCCACTTGTAAAATTCTGACAGTATAAATAACACACTGAGCAAGTAACTTCTTATATGTATGAAAGATTTTCATTTCCCTCGAGTATGTGAAAATAAAGGGCTTACATATATGTTGGATGTGTAATATCATATAAGATGTAATATCTAATAAGGACCTTTCTGGTGTCACTTCTAAAAGATTCAATCAAATAGTATTTATAATTACCGATCTCTACAACTATTATTACTAAAGCGTAGTACTAACGGCAAAACTGGAATGATTCGTAGGGAAGTGCGAAGATTAGTTTCTCAAAGTTAATTTTTTTTGCTAAAGCAAGCATGGGAAAATAAAATGCGGAATGTAAATTGCAAGAAAAATAAAAGCAGCATATCCTAGTTTTTAGAGATGTCTACAATTGCTTGCTTGATTATAGATTCATCGAATTAGGTTTTATATTGTCTAAGCTTAGCCAACTCACCAAGAAAAGCTAAGTGAGAGTCCAATTTATCAAATTAGTCAATTTAATTAGATGAAAAAACATCCTAATGAATTTAGACTAACCGCATTACAAATGAGGATTACACAAAGGTGAATATCAACCAGGAATTGTCTAAATCAATATTCATCATGATTCTTCCTAGGTTGATAGAGCAATGCTTTTCATCATAGACAATAAATTACAAGTCTAACTAACATTTTGCTACATTTGATCAAATTACAATTTTATGTCACGTATTATAATTTATTGCCTAGCTAATGATCTTATATCCTCAAACAGAAATACAACCACAAACATGTAAAGACAGTAAAAGAATCCGAAGACAACAGAAACAATCAAGATGAAAAGTTTCGCACAAGGTTACAATAGGAGAAAACCTTAAAAACTAGGAATTGAGAATCCTTGCCTTCCCATTGAGATAATAAAGCTCAAACCCGCCATCTTCAACCCGCAACTACGGAGAAATATTGAATTCAAAACCTAACACTAATGTTGTAGATGGATAGAGGGGGAAAAACAAAGAAAACAAGTGTTCATTTACCCAAAACGGCCACTCGAATTCAAAGATATGACCTAAAAATCGATGAGTAGTTTTTATATGGCGAGATAGCACCGCGACGCTACGAAAAAATACAGAATTTGTATCCATGACGAGGTCCTTTAGGGGTGTTTTAGTTTTTTTGGCTTCCACTTGTCCTAATTACTTCGTTAGAACTCTAAATTGATCCGTTTTAGCTTCGTTTTCTTCCTAACGCTCAATTATATCTCCAAATTGCTCGATACCTACAAAATAACATATTTAAGCACATTAAATATTATCAACAGGCAAGATTAAAGATATTAAGATAGCACATTTAGGCACTACAACAAAAATAGGCTTTTATGACTAAAAGACAGTCATTACCACATTTCTTGACTTTTTTTTTTAGTCATTTAATCGCCCATCATCTAAAGAGTATAGATGACACATGAGAAATCAGCCATCATTGTTAGTTTCATGACTTTTAAACACAGTCAACAAAGAACATGTATTGACATTTATTATAAGTCATGGAAACCATTTTTCGTGACAATTTTCTACAGTCATTAAATAATGAAAATGTTGACTTTTTCTGTCAAATAAAGAGTTATCTTGACATTAAAATTCTGTCATCTAGCAACAAATAATGACACATCTAAAGTGTGAATAATACATTAATTATGACATTTTTTTAAGGTCATGGAATTACATACATTGTCACTTATTTATAGTCATAGAAGTCTGATAGATGACTTTTGTCAAATATCAAAGAAACCATTTCAATGATACACGTTATTACACCTATATTTCATACATGTTATTATACCCGTGTTTCCTTCAGTTTCAACACAAAATATGTACACAAACATAAAAAGTAACTTTCATATATAATAATATACTTTCTATCATTACTACAAGGAAACTAACAACAACAACACTAGTAACCATATTTTGGGTACATCATTTACAAATTTAGTATTTAGAACTAAATGTTGGCATAATCCCAAAAAAAATATATACAACACCTATTTAAATATCTTGGTTGGTGGGTTTCCTTACTTCAATGGCCTTGTCCAGGAACCTTGTAAAAAAAAACATTCATTTCAGAATTTAACTCAATATATAAAGGTGAACAATAATAACAATATGCAGGTTATATATATGTTGATCGTACTGTGACAATATCATGTTGGTATATACATTTGCACTGAAAACCCCACTTTAGTCATACAAGTAAGCTTCAATGAACACTTTCAAACAAAAATTATTCATAGAATCACAATATAACCACATAAATACGCTCAAAATCACATTATAATCTCACTTTTCAACCTTAATAACATGGATAACCTCCAAATTTAACTTATACACTAGTCTACTAGAAAGAATAAGAGTTAATTGAAAAATTTCTTCGTGTAGGGGCGGGGGAACAAGTGAAACATAGTATAGTAGGAGCAAAACAAATATATAATTATTGTAACTTGTCCAACCTTTTAGGAGTATAACTACTAAAAAGTAGAAATACTCATACATTAGTCTATTAGAAAGAATAAGGGTTAAATGAAAAACTTCTTCATTTAGGGAAGGACAAGTGAAACATAATACAAAAAATATTTATCACAAAAAAAAAAAAGATATCTCCTTAGAACTCAAGCACATTAATCCAATACGAGCAAAACAAATATATAACTTAAATACTCTCAAACCAACATAAAAAGTATCTAAAAGTTTTTCAAGAAACAATTTAACTCCCCAAACAACCAAAATAGTTCATATGTGCACTTTGATTATCAAAACCAATTAAAAAGTACGTAAAAAATGTCTAAGTGACACATTATCAAAATCAACTCAAGCATATAATAAATGGATGAATTAGCTACCATAATTGCAGGATAGCCACACATAATATACATGCATTTATAAACAGAGTTTGAACTTCTAAAAAATACCTAAGTATTTTAAGGTCTATCCCCTTCCTGTTCTTGCCCCAACAATTTTTTAGTGACCTCTAAACTATGACTTCTAAACTCACAACTATGACCTCTAAACTCATAACCAACCAAAGAATGGCTAAAAAGTGTCTAAATGACACTTTGACTCCAAAAACAACTCCATAATGCACAACTATGACCTCTAAACTGAAAACCAACCAAAGAATGACTAAAAAGTGTCTAGATGACACTTTGACTCCAAAAACAACTCCATAAATGCATGAATTGGCTACCGTAACTGCAGGATAGCCACAACACATTATAACTTAAACATATAAAAAAAGGTACTAAATGTATGAACTGGCTACCGTAACTGCAGGATAGCCACAACACATTATAACTTAAACATATAAAAAAAGGTACTAAATGTATGAACTGGCTACCGTAACTGCAGGATAGCCACAACCATAATTTTGAACTTTAATTTAAAAATAAATAAATACCTAAGAAGTTAAAGGTCCATCGCCTCCATGTCCTTGCCCCAACAATTTTTGAACATCGGTCCATCTATCTTCCTATTTGACAAGTTGATTCATTAACTTCTCATTTTGCTCCACCATCTTTGCGTACTTTTCAATGAGTTCATATCCTAGATAGGTTACTATCATAGCTTGAACTCATTCTCCTTAAACCTAGTACTAAGAAAAATTAGGAATGTTATTTAGGTCGTAATCGTAGTCGAGGCATAGTTATAAATTTTTTAACAAGAAACAAATAGTAGCATGATTGTAATTGTAATATTTCAAGGAAAATACTCACTTGTATAGCCTTCCTCGAGGGCTTTCTCTATCACACACACGGGACTTATTCACAATAATCTAACTAGAATCCAAATCCCCAAATTCCCTTTATTAATAACCACTCTACTGTACTAATATCCTAATAGCATTCCCAATGCTAGGTTGCTAGATGACTAACGGGTTCATAGGCTGGTTTGGATTGGATTGAAAAATACTTCAAATGGGTTGTTCCTGTTCCAATTTTCATTTTGTCCTAGCAAAGTAACCTTTTCACAACTTTTTCCACTTTATTATGAAGAAGAATATCAACTTTCCTACATCAAAAGACGTAGCTCTTTAAAATATTTAACTAAGAACGTTCCAACACTTCAAAATAATTGATTCTCTGGACATGAAAATAAATCGATGAAACATCAATTCCAAAATCATCACAGTTACAAATACGTTAAACGTTAACAATTATTGCAACAAACGATGTCGTGGATCAAAATTAGATGTCAAAATACACATTAAGAATAGAATTATCTAACATGGCCAAATAACACTCACCACTTTTCAAATCGCCAAAGAAATAAAGAATTATCAACAGATGCCCAAGCTCTTCGTATTTCAGGAAATATTCCACATAAGGCAGTTCCTTCCCCTCCAGCAGCATTATATCTTTCTATAAGCACTGGAGGTAACTCCCAAGTATCCACCACTTCCACTAGAGGAGGCAGCAACACCGGCGTCTTGAGGCAGCAGCAGCACCGGCGTCTGGCGGCAGCAACAGGCCGCGTCGGGCAGAGGAGCGGTTGA

mRNA sequence

ATGACTCTTATAGGAGGCATTGCAGGAAGCGTTACTGGGAGCTTGCAAATTCCGGTGAATTTGGGGGAAAAAATTATCCATGATCTAGCTAATATTGCAGTGAGTCATTACGCCAAGGTGCAAGGGGTTGAAGTGAGCTTGGTAGGTGTGATAGATGCTACTGTTCAGGATGGGCCTAATGGAAAAATATATAGTCTTAAGTTGAAGTTGAAAATCGTTGCCGGTACTGCTCATCTTTATAAGATCTTTTTATTTGAATTGCTTGTTCCGTCCTTGGGCATTCCATACGTCGTGTCTATCAAATATCTCGAAGATGTCGGAAATATTCCACATAAGGCAGTTCCTTCCCCTCCAGCAGCATTATATCTTTCTATAAGCACTGGAGGTAACTCCCAAGTATCCACCACTTCCACTAGAGGAGGCAGCAACACCGGCGTCTTGAGGCAGCAGCAGCACCGGCGTCTGGCGGCAGCAACAGGCCGCGTCGGGCAGAGGAGCGGTTGA

Coding sequence (CDS)

ATGACTCTTATAGGAGGCATTGCAGGAAGCGTTACTGGGAGCTTGCAAATTCCGGTGAATTTGGGGGAAAAAATTATCCATGATCTAGCTAATATTGCAGTGAGTCATTACGCCAAGGTGCAAGGGGTTGAAGTGAGCTTGGTAGGTGTGATAGATGCTACTGTTCAGGATGGGCCTAATGGAAAAATATATAGTCTTAAGTTGAAGTTGAAAATCGTTGCCGGTACTGCTCATCTTTATAAGATCTTTTTATTTGAATTGCTTGTTCCGTCCTTGGGCATTCCATACGTCGTGTCTATCAAATATCTCGAAGATGTCGGAAATATTCCACATAAGGCAGTTCCTTCCCCTCCAGCAGCATTATATCTTTCTATAAGCACTGGAGGTAACTCCCAAGTATCCACCACTTCCACTAGAGGAGGCAGCAACACCGGCGTCTTGAGGCAGCAGCAGCACCGGCGTCTGGCGGCAGCAACAGGCCGCGTCGGGCAGAGGAGCGGTTGA

Protein sequence

MTLIGGIAGSVTGSLQIPVNLGEKIIHDLANIAVSHYAKVQGVEVSLVGVIDATVQDGPNGKIYSLKLKLKIVAGTAHLYKIFLFELLVPSLGIPYVVSIKYLEDVGNIPHKAVPSPPAALYLSISTGGNSQVSTTSTRGGSNTGVLRQQQHRRLAAATGRVGQRSG
Homology
[Close]
BLAST of ClCG01G015300 vs. TrEMBL
Match: A0A0A0KKQ8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G483230 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 7.7e-10
Identity = 42/107 (39.25%), Postives = 62/107 (57.94%), Query Frame = 1 

Query: 1   MTLIGGIAGSVTGSLQIPVNLGEKIIHDL-ANIAVSHYAKVQGVEVSLVGVIDATVQDGP 60
           MTL  GI G   G   +P++L +  + DL     + H   V  ++ +  G ID +++ G 
Sbjct: 1   MTLGIGIGG---GLQIVPLDLSDNTLCDLLVQHVIKHCQSVLQIDATFEGFIDGSIEIGL 60

Query: 61  NGKIYSLKLKLKIVAGTAHLYKIFLFELLVPSLGIPYVVSIKYLEDV 107
           NGK Y LKLKLK+  G A++ KI L +L  P +G P VVS +YLE++
Sbjct: 61  NGKTYILKLKLKVRIGDAYVVKIVLVKLFFPFVGFPSVVSFEYLEEI 104

[Close]
BLAST of ClCG01G015300 vs. TrEMBL
Match: A0A0A0KFK8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G483240 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 7.7e-10
Identity = 38/98 (38.78%), Postives = 61/98 (62.24%), Query Frame = 1 

Query: 11  VTGSLQI-PVNLGEKIIHDL-ANIAVSHYAKVQGVEVSLVGVIDATVQDGPNGKIYSLKL 70
           ++G LQI P++L +  + DL     + H   V  ++ +  G+ID  ++ G NGK Y+LKL
Sbjct: 7   ISGGLQIVPLDLSDNTLCDLLVQHVMKHCQSVLQIDATFEGLIDGKIEIGLNGKTYTLKL 66

Query: 71  KLKIVAGTAHLYKIFLFELLVPSLGIPYVVSIKYLEDV 107
           K+K+  G A++ KI L +L  P +G P VVS +YLE++
Sbjct: 67  KIKVRIGDAYVVKIVLVKLFFPFVGFPSVVSFEYLEEI 104

[Close]
BLAST of ClCG01G015300 vs. TrEMBL
Match: A0A0A0KFL5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G483250 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 6.5e-09
Identity = 38/96 (39.58%), Postives = 58/96 (60.42%), Query Frame = 1 

Query: 11  VTGSLQI-PVNLGEKIIHDL-ANIAVSHYAKVQGVEVSLVGVIDATVQDGPNGKIYSLKL 70
           + GSLQI P++L +  + DL     + H   V  ++ +  G ID +++ G NGK YS KL
Sbjct: 7   IGGSLQIVPMDLSDNTLCDLLVQHVMKHCQTVLQIDATYEGFIDGSIEIGMNGKTYSFKL 66

Query: 71  KLKIVAGTAHLYKIFLFELLVPSLGIPYVVSIKYLE 105
           KLKI  G A++ K  L ++  P +G+P +VS +YLE
Sbjct: 67  KLKIKVGDAYVIKPVLVKIFFPFIGLPSIVSFEYLE 102

[Close]
BLAST of ClCG01G015300 vs. NCBI nr
Match: gi|700193132|gb|KGN48336.1| (hypothetical protein Csa_6G483230 [Cucumis sativus])

HSP 1 Score: 72.0 bits (175), Expect = 1.1e-09
Identity = 42/107 (39.25%), Postives = 62/107 (57.94%), Query Frame = 1 

Query: 1   MTLIGGIAGSVTGSLQIPVNLGEKIIHDL-ANIAVSHYAKVQGVEVSLVGVIDATVQDGP 60
           MTL  GI G   G   +P++L +  + DL     + H   V  ++ +  G ID +++ G 
Sbjct: 1   MTLGIGIGG---GLQIVPLDLSDNTLCDLLVQHVIKHCQSVLQIDATFEGFIDGSIEIGL 60

Query: 61  NGKIYSLKLKLKIVAGTAHLYKIFLFELLVPSLGIPYVVSIKYLEDV 107
           NGK Y LKLKLK+  G A++ KI L +L  P +G P VVS +YLE++
Sbjct: 61  NGKTYILKLKLKVRIGDAYVVKIVLVKLFFPFVGFPSVVSFEYLEEI 104

[Close]
BLAST of ClCG01G015300 vs. NCBI nr
Match: gi|700193134|gb|KGN48338.1| (hypothetical protein Csa_6G483240 [Cucumis sativus])

HSP 1 Score: 72.0 bits (175), Expect = 1.1e-09
Identity = 38/98 (38.78%), Postives = 61/98 (62.24%), Query Frame = 1 

Query: 11  VTGSLQI-PVNLGEKIIHDL-ANIAVSHYAKVQGVEVSLVGVIDATVQDGPNGKIYSLKL 70
           ++G LQI P++L +  + DL     + H   V  ++ +  G+ID  ++ G NGK Y+LKL
Sbjct: 7   ISGGLQIVPLDLSDNTLCDLLVQHVMKHCQSVLQIDATFEGLIDGKIEIGLNGKTYTLKL 66

Query: 71  KLKIVAGTAHLYKIFLFELLVPSLGIPYVVSIKYLEDV 107
           K+K+  G A++ KI L +L  P +G P VVS +YLE++
Sbjct: 67  KIKVRIGDAYVVKIVLVKLFFPFVGFPSVVSFEYLEEI 104

[Close]
BLAST of ClCG01G015300 vs. NCBI nr
Match: gi|700193139|gb|KGN48343.1| (hypothetical protein Csa_6G483250 [Cucumis sativus])

HSP 1 Score: 68.9 bits (167), Expect = 9.3e-09
Identity = 38/96 (39.58%), Postives = 58/96 (60.42%), Query Frame = 1 

Query: 11  VTGSLQI-PVNLGEKIIHDL-ANIAVSHYAKVQGVEVSLVGVIDATVQDGPNGKIYSLKL 70
           + GSLQI P++L +  + DL     + H   V  ++ +  G ID +++ G NGK YS KL
Sbjct: 7   IGGSLQIVPMDLSDNTLCDLLVQHVMKHCQTVLQIDATYEGFIDGSIEIGMNGKTYSFKL 66

Query: 71  KLKIVAGTAHLYKIFLFELLVPSLGIPYVVSIKYLE 105
           KLKI  G A++ K  L ++  P +G+P +VS +YLE
Sbjct: 67  KLKIKVGDAYVIKPVLVKIFFPFIGLPSIVSFEYLE 102

The following BLAST results are available for this feature:
BLAST of ClCG01G015300 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KKQ8_CUCSA7.7e-1039.25Uncharacterized protein OS=Cucumis sativus GN=Csa_6G483230 PE=4 SV=1[more]
A0A0A0KFK8_CUCSA7.7e-1038.78Uncharacterized protein OS=Cucumis sativus GN=Csa_6G483240 PE=4 SV=1[more]
A0A0A0KFL5_CUCSA6.5e-0939.58Uncharacterized protein OS=Cucumis sativus GN=Csa_6G483250 PE=4 SV=1[more]
BLAST of ClCG01G015300 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700193132|gb|KGN48336.1|1.1e-0939.25hypothetical protein Csa_6G483230 [Cucumis sativus][more]
gi|700193134|gb|KGN48338.1|1.1e-0938.78hypothetical protein Csa_6G483240 [Cucumis sativus][more]
gi|700193139|gb|KGN48343.1|9.3e-0939.58hypothetical protein Csa_6G483250 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG01G015300.1ClCG01G015300.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
ClCG01G015300MELO3C024616.2Melon (DHL92) v3.6.1medwcgB511
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG01G015300Cucurbita pepo (Zucchini)cpewcgB061
ClCG01G015300Cucurbita pepo (Zucchini)cpewcgB425
ClCG01G015300Bottle gourd (USVL1VR-Ls)lsiwcgB127
ClCG01G015300Cucumber (Gy14) v2cgybwcgB399
ClCG01G015300Silver-seed gourdcarwcgB0230
ClCG01G015300Silver-seed gourdcarwcgB0778
ClCG01G015300Cucumber (Chinese Long) v3cucwcgB455
ClCG01G015300Watermelon (97103) v2wcgwmbB089
ClCG01G015300Wax gourdwcgwgoB225
ClCG01G015300Cucumber (Gy14) v1cgywcgB134
ClCG01G015300Cucurbita maxima (Rimu)cmawcgB754
ClCG01G015300Cucurbita maxima (Rimu)cmawcgB579
ClCG01G015300Cucurbita moschata (Rifu)cmowcgB755
ClCG01G015300Cucurbita moschata (Rifu)cmowcgB575
ClCG01G015300Wild cucumber (PI 183967)cpiwcgB453
ClCG01G015300Cucumber (Chinese Long) v2cuwcgB432
ClCG01G015300Melon (DHL92) v3.5.1mewcgB516
ClCG01G015300Watermelon (97103) v1wcgwmB153