ClCG01G015270.1 (mRNA) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG01G015270.1
Type	mRNA
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Unknown protein
Location	CG_Chr01 : 29513064 .. 29513375 (+)
Sequence length	312

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTATTGGTCCAGCAATCATTGAGTTACCCATTGAGGATATCGATCGCCCAGATGTACAAGAAGCTGGAAGGCATGCAATACTGGAGCATAACACGAAAGAGAATGACAATTTGACTTTCATTCATGTGGTGAACGGCCTAGCGCCAAGTATTGTGACTGGTGTTAGCACGTACTATATTCTTGTGATTAAAGCTAAAACTGCCCATGGAATTGTTTGGTCATATGTGGTTAACGTAACTAAGTATTTTACAATACCATCCCCAAGCTATCATCTCAACTCTTTCAGGGATGTCATCCCCTACAAGTAG

mRNA sequence

ATGAGTATTGGTCCAGCAATCATTGAGTTACCCATTGAGGATATCGATCGCCCAGATGTACAAGAAGCTGGAAGGCATGCAATACTGGAGCATAACACGAAAGAGAATGACAATTTGACTTTCATTCATGTGGTGAACGGCCTAGCGCCAAGTATTGTGACTGGTGTTAGCACGTACTATATTCTTGTGATTAAAGCTAAAACTGCCCATGGAATTGTTTGGTCATATGTGGTTAACGTAACTAAGTATTTTACAATACCATCCCCAAGCTATCATCTCAACTCTTTCAGGGATGTCATCCCCTACAAGTAG

Coding sequence (CDS)

ATGAGTATTGGTCCAGCAATCATTGAGTTACCCATTGAGGATATCGATCGCCCAGATGTACAAGAAGCTGGAAGGCATGCAATACTGGAGCATAACACGAAAGAGAATGACAATTTGACTTTCATTCATGTGGTGAACGGCCTAGCGCCAAGTATTGTGACTGGTGTTAGCACGTACTATATTCTTGTGATTAAAGCTAAAACTGCCCATGGAATTGTTTGGTCATATGTGGTTAACGTAACTAAGTATTTTACAATACCATCCCCAAGCTATCATCTCAACTCTTTCAGGGATGTCATCCCCTACAAGTAG

Protein sequence

MSIGPAIIELPIEDIDRPDVQEAGRHAILEHNTKENDNLTFIHVVNGLAPSIVTGVSTYYILVIKAKTAHGIVWSYVVNVTKYFTIPSPSYHLNSFRDVIPYK

Homology

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BLAST of ClCG01G015270.1 vs. TrEMBL
Match: A0A0A0L3W1_CUCSA (Proteinase inhibitor I25, cystatin OS=Cucumis sativus GN=Csa_4G508490 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.4e-06
Identity = 38/99 (38.38%), Postives = 51/99 (51.52%), Query Frame = 1


Query: 11  PIEDI-DRPDVQEA-GRHAILEHNTKENDNLTFIHVVNGLAPSIV-----TGVSTYYILV 70
           PIEDI D   VQ   G+ A+ +HN K  DNL  + VVNGL   I      T     Y L+
Sbjct: 21  PIEDINDDLQVQSIIGQLAVEDHNKKTGDNLELVDVVNGLRSGIFVQPGSTHEGILYHLL 80

Query: 71  IKAKTAHGIVWSYVVNVTKYFTIPSPSYHLNSFRDVIPY 103
           ++AKT  GI W+YV  + + +      Y   SF  ++PY
Sbjct: 81  VEAKTIEGINWTYVAKLLELYVGCRIRYEFKSFEPLLPY 119

[Close]

BLAST of ClCG01G015270.1 vs. NCBI nr
Match: gi|659083303|ref|XP_008442277.1| (PREDICTED: cysteine proteinase inhibitor A-like [Cucumis melo])

HSP 1 Score: 62.8 bits (151), Expect = 4.1e-07
Identity = 39/96 (40.62%), Postives = 52/96 (54.17%), Query Frame = 1


Query: 11  PIEDI-DRPDVQEAGRHAILEHNTKENDNLTFIHVVNGLAPSIVTGVS----TYYILVIK 70
           PIEDI D  +VQ+ G   + +HN K  +NL F+ VVNGLA S    +S      Y LV++
Sbjct: 9   PIEDINDNLEVQDLGNLTVDDHNKKTGENLKFVRVVNGLAASFSDPISPLGGVLYELVLE 68

Query: 71  AKTAHGIVWSYVVNVTKYFTIPSPSYHLNSFRDVIP 102
           A T   I W+Y   V+K   I  P + L SF+   P
Sbjct: 69  AITTSKINWTYKARVSKSKAITPPFHMLYSFQSFKP 104

[Close]

BLAST of ClCG01G015270.1 vs. NCBI nr
Match: gi|700199663|gb|KGN54821.1| (Proteinase inhibitor I25, cystatin [Cucumis sativus])

HSP 1 Score: 59.7 bits (143), Expect = 3.5e-06
Identity = 38/99 (38.38%), Postives = 51/99 (51.52%), Query Frame = 1


Query: 11  PIEDI-DRPDVQEA-GRHAILEHNTKENDNLTFIHVVNGLAPSIV-----TGVSTYYILV 70
           PIEDI D   VQ   G+ A+ +HN K  DNL  + VVNGL   I      T     Y L+
Sbjct: 21  PIEDINDDLQVQSIIGQLAVEDHNKKTGDNLELVDVVNGLRSGIFVQPGSTHEGILYHLL 80

Query: 71  IKAKTAHGIVWSYVVNVTKYFTIPSPSYHLNSFRDVIPY 103
           ++AKT  GI W+YV  + + +      Y   SF  ++PY
Sbjct: 81  VEAKTIEGINWTYVAKLLELYVGCRIRYEFKSFEPLLPY 119

The following BLAST results are available for this feature:

BLAST of ClCG01G015270.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L3W1_CUCSA	2.4e-06	38.38	Proteinase inhibitor I25, cystatin OS=Cucumis sativus GN=Csa_4G508490 PE=4 SV=1	[more]

BLAST of ClCG01G015270.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659083303\|ref\|XP_008442277.1\|	4.1e-07	40.63	PREDICTED: cysteine proteinase inhibitor A-like [Cucumis melo]	[more]
gi\|700199663\|gb\|KGN54821.1\|	3.5e-06	38.38	Proteinase inhibitor I25, cystatin [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR020381	Proteinase inhibitor I25, cystatin, conserved region

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
ClCG01G015270	ClCG01G015270	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
ClCG01G015270.1	ClCG01G015270.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG01G015270.1.cds1	ClCG01G015270.1.cds1	CDS

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR020381	Proteinase inhibitor I25, cystatin, conserved region	PRODOM	PD001231		coord: 19..97 score: 0
IPR020381	Proteinase inhibitor I25, cystatin, conserved region	PFAM	PF16845	SQAPI	coord: 12..82 score: 5.1
None	No IPR available	GENE3D	G3DSA:3.10.450.10		coord: 14..68 score: 2.
None	No IPR available	unknown	SSF54403	Cystatin/monellin	coord: 11..69 score: 1.2