ClCG01G015270 (gene) Watermelon (Charleston Gray)

Overview
NameClCG01G015270
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionUnknown protein
LocationCG_Chr01 : 29513064 .. 29513375 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTATTGGTCCAGCAATCATTGAGTTACCCATTGAGGATATCGATCGCCCAGATGTACAAGAAGCTGGAAGGCATGCAATACTGGAGCATAACACGAAAGAGAATGACAATTTGACTTTCATTCATGTGGTGAACGGCCTAGCGCCAAGTATTGTGACTGGTGTTAGCACGTACTATATTCTTGTGATTAAAGCTAAAACTGCCCATGGAATTGTTTGGTCATATGTGGTTAACGTAACTAAGTATTTTACAATACCATCCCCAAGCTATCATCTCAACTCTTTCAGGGATGTCATCCCCTACAAGTAG

mRNA sequence

ATGAGTATTGGTCCAGCAATCATTGAGTTACCCATTGAGGATATCGATCGCCCAGATGTACAAGAAGCTGGAAGGCATGCAATACTGGAGCATAACACGAAAGAGAATGACAATTTGACTTTCATTCATGTGGTGAACGGCCTAGCGCCAAGTATTGTGACTGGTGTTAGCACGTACTATATTCTTGTGATTAAAGCTAAAACTGCCCATGGAATTGTTTGGTCATATGTGGTTAACGTAACTAAGTATTTTACAATACCATCCCCAAGCTATCATCTCAACTCTTTCAGGGATGTCATCCCCTACAAGTAG

Coding sequence (CDS)

ATGAGTATTGGTCCAGCAATCATTGAGTTACCCATTGAGGATATCGATCGCCCAGATGTACAAGAAGCTGGAAGGCATGCAATACTGGAGCATAACACGAAAGAGAATGACAATTTGACTTTCATTCATGTGGTGAACGGCCTAGCGCCAAGTATTGTGACTGGTGTTAGCACGTACTATATTCTTGTGATTAAAGCTAAAACTGCCCATGGAATTGTTTGGTCATATGTGGTTAACGTAACTAAGTATTTTACAATACCATCCCCAAGCTATCATCTCAACTCTTTCAGGGATGTCATCCCCTACAAGTAG

Protein sequence

MSIGPAIIELPIEDIDRPDVQEAGRHAILEHNTKENDNLTFIHVVNGLAPSIVTGVSTYYILVIKAKTAHGIVWSYVVNVTKYFTIPSPSYHLNSFRDVIPYK
Homology
[Close]
BLAST of ClCG01G015270 vs. TrEMBL
Match: A0A0A0L3W1_CUCSA (Proteinase inhibitor I25, cystatin OS=Cucumis sativus GN=Csa_4G508490 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.4e-06
Identity = 38/99 (38.38%), Postives = 51/99 (51.52%), Query Frame = 1 

Query: 11  PIEDI-DRPDVQEA-GRHAILEHNTKENDNLTFIHVVNGLAPSIV-----TGVSTYYILV 70
           PIEDI D   VQ   G+ A+ +HN K  DNL  + VVNGL   I      T     Y L+
Sbjct: 21  PIEDINDDLQVQSIIGQLAVEDHNKKTGDNLELVDVVNGLRSGIFVQPGSTHEGILYHLL 80

Query: 71  IKAKTAHGIVWSYVVNVTKYFTIPSPSYHLNSFRDVIPY 103
           ++AKT  GI W+YV  + + +      Y   SF  ++PY
Sbjct: 81  VEAKTIEGINWTYVAKLLELYVGCRIRYEFKSFEPLLPY 119

[Close]
BLAST of ClCG01G015270 vs. NCBI nr
Match: gi|659083303|ref|XP_008442277.1| (PREDICTED: cysteine proteinase inhibitor A-like [Cucumis melo])

HSP 1 Score: 62.8 bits (151), Expect = 4.1e-07
Identity = 39/96 (40.62%), Postives = 52/96 (54.17%), Query Frame = 1 

Query: 11  PIEDI-DRPDVQEAGRHAILEHNTKENDNLTFIHVVNGLAPSIVTGVS----TYYILVIK 70
           PIEDI D  +VQ+ G   + +HN K  +NL F+ VVNGLA S    +S      Y LV++
Sbjct: 9   PIEDINDNLEVQDLGNLTVDDHNKKTGENLKFVRVVNGLAASFSDPISPLGGVLYELVLE 68

Query: 71  AKTAHGIVWSYVVNVTKYFTIPSPSYHLNSFRDVIP 102
           A T   I W+Y   V+K   I  P + L SF+   P
Sbjct: 69  AITTSKINWTYKARVSKSKAITPPFHMLYSFQSFKP 104

[Close]
BLAST of ClCG01G015270 vs. NCBI nr
Match: gi|700199663|gb|KGN54821.1| (Proteinase inhibitor I25, cystatin [Cucumis sativus])

HSP 1 Score: 59.7 bits (143), Expect = 3.5e-06
Identity = 38/99 (38.38%), Postives = 51/99 (51.52%), Query Frame = 1 

Query: 11  PIEDI-DRPDVQEA-GRHAILEHNTKENDNLTFIHVVNGLAPSIV-----TGVSTYYILV 70
           PIEDI D   VQ   G+ A+ +HN K  DNL  + VVNGL   I      T     Y L+
Sbjct: 21  PIEDINDDLQVQSIIGQLAVEDHNKKTGDNLELVDVVNGLRSGIFVQPGSTHEGILYHLL 80

Query: 71  IKAKTAHGIVWSYVVNVTKYFTIPSPSYHLNSFRDVIPY 103
           ++AKT  GI W+YV  + + +      Y   SF  ++PY
Sbjct: 81  VEAKTIEGINWTYVAKLLELYVGCRIRYEFKSFEPLLPY 119

The following BLAST results are available for this feature:
BLAST of ClCG01G015270 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L3W1_CUCSA2.4e-0638.38Proteinase inhibitor I25, cystatin OS=Cucumis sativus GN=Csa_4G508490 PE=4 SV=1[more]
BLAST of ClCG01G015270 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659083303|ref|XP_008442277.1|4.1e-0740.63PREDICTED: cysteine proteinase inhibitor A-like [Cucumis melo][more]
gi|700199663|gb|KGN54821.1|3.5e-0638.38Proteinase inhibitor I25, cystatin [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR020381Proteinase inhibitor I25, cystatin, conserved region
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG01G015270.1ClCG01G015270.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR020381Proteinase inhibitor I25, cystatin, conserved regionPRODOMPD001231coord: 19..97
score: 0
IPR020381Proteinase inhibitor I25, cystatin, conserved regionPFAMPF16845SQAPIcoord: 12..82
score: 5.1
NoneNo IPR availableGENE3DG3DSA:3.10.450.10coord: 14..68
score: 2.
NoneNo IPR availableunknownSSF54403Cystatin/monellincoord: 11..69
score: 1.2

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG01G015270Wax gourdwcgwgoB225
ClCG01G015270Cucumber (Gy14) v1cgywcgB134
ClCG01G015270Cucurbita maxima (Rimu)cmawcgB754
ClCG01G015270Cucurbita maxima (Rimu)cmawcgB579
ClCG01G015270Cucurbita moschata (Rifu)cmowcgB755
ClCG01G015270Cucurbita moschata (Rifu)cmowcgB575
ClCG01G015270Wild cucumber (PI 183967)cpiwcgB453
ClCG01G015270Cucumber (Chinese Long) v2cuwcgB432
ClCG01G015270Melon (DHL92) v3.5.1mewcgB516
ClCG01G015270Watermelon (97103) v1wcgwmB153
ClCG01G015270Cucurbita pepo (Zucchini)cpewcgB061
ClCG01G015270Cucurbita pepo (Zucchini)cpewcgB425
ClCG01G015270Bottle gourd (USVL1VR-Ls)lsiwcgB127
ClCG01G015270Cucumber (Gy14) v2cgybwcgB399
ClCG01G015270Melon (DHL92) v3.6.1medwcgB511
ClCG01G015270Silver-seed gourdcarwcgB0230
ClCG01G015270Silver-seed gourdcarwcgB0778
ClCG01G015270Cucumber (Chinese Long) v3cucwcgB455
ClCG01G015270Watermelon (97103) v2wcgwmbB089