ClCG01G010430.1 (mRNA) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG01G010430.1
Type	mRNA
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Unknown protein
Location	CG_Chr01 : 15821372 .. 15821668 (-)
Sequence length	297

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATTTCTTCCGTTGCGTTAGGGATTTCAGCCCTTTCATATATGACATCTATGATTGTCAGTTAAGTATATTACATGTTGATGCAGCTTGCAAGATGGGATTCCCACTGGTGGGCTCTAGAGGGGTGATTGGGTCCTCTTCAGGATCTATGATCGCTTCTATGCATGGTTTTCGGAAGTTATCTTTGACCCTAGCAGATGTTGAAGCGTTGGCTATTTATGAGGGTCTACGATTGGCTGTTAGATTGGAGTTATCTCATTTGTTGGTGTTATCTGATTCTTTAGTGATTATTTAG

mRNA sequence

ATGTATTTCTTCCGTTGCGTTAGGGATTTCAGCCCTTTCATATATGACATCTATGATTGTCAGTTAAGTATATTACATGTTGATGCAGCTTGCAAGATGGGATTCCCACTGGTGGGCTCTAGAGGGGTGATTGGGTCCTCTTCAGGATCTATGATCGCTTCTATGCATGGTTTTCGGAAGTTATCTTTGACCCTAGCAGATGTTGAAGCGTTGGCTATTTATGAGGGTCTACGATTGGCTGTTAGATTGGAGTTATCTCATTTGTTGGTGTTATCTGATTCTTTAGTGATTATTTAG

Coding sequence (CDS)

ATGTATTTCTTCCGTTGCGTTAGGGATTTCAGCCCTTTCATATATGACATCTATGATTGTCAGTTAAGTATATTACATGTTGATGCAGCTTGCAAGATGGGATTCCCACTGGTGGGCTCTAGAGGGGTGATTGGGTCCTCTTCAGGATCTATGATCGCTTCTATGCATGGTTTTCGGAAGTTATCTTTGACCCTAGCAGATGTTGAAGCGTTGGCTATTTATGAGGGTCTACGATTGGCTGTTAGATTGGAGTTATCTCATTTGTTGGTGTTATCTGATTCTTTAGTGATTATTTAG

Protein sequence

MYFFRCVRDFSPFIYDIYDCQLSILHVDAACKMGFPLVGSRGVIGSSSGSMIASMHGFRKLSLTLADVEALAIYEGLRLAVRLELSHLLVLSDSLVII

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR012337	RNaseH-like_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
ClCG01G010430	ClCG01G010430	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
ClCG01G010430.1	ClCG01G010430.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG01G010430.1.cds1	ClCG01G010430.1.cds1	CDS

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012337	Ribonuclease H-like domain	unknown	SSF53098	Ribonuclease H-like	coord: 24..97 score: 2.0
None	No IPR available	PFAM	PF13456	RVT_3	coord: 27..98 score: 1.