ClCG01G003010.1 (mRNA) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG01G003010.1
Type	mRNA
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Unknown protein
Location	CG_Chr01 : 3056023 .. 3056583 (-)
Sequence length	492

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAACCTCCATTTTCTTTCTCCTCTTTCTTCTTTCTCTTTTCTCCTTCCATTTCCTCTCCATTGCAGCTTCTTTTCACTTCCACAAAAATGGTCTCACTCTTTCTTCGGACGACGATAATGATTGGGAATTTGTCATGAACCCCAACACTTTTAGCTCCCGCATTTGGATTGGAAACAACTGTAAATTTGACGAATTCGGGCAGCGCCACAAATGTCGAACCGTTGACTGTGACGGTGGCAACGGTGGTGGCAACTTCCTTCAAAGCCGAGCTTATGTGGACCGGGGCGGTGGCAGCCTTTTCCGGTGGCGAGCTTACGCAGATGACATCTTCAAATATGTGTCAAACAAATTGAATAATAATGTTGGGAGTAGCAATAGTTTAGTTAAATTATTGTTATTTGTGCTCGTTCTTTAATTTCTTCGTTATGAAAAATACTTAGGGGTATCCTAAACACTTTCATTTCATTTAAATCAGTGTGAGTTTGAAAATGACGCTTGTAGTTTTCATCTTGAACTGCTTGTGAAAAACAACTTCAAGGAGTTTGATGAGATATAA

mRNA sequence

ATGGGAACCTCCATTTTCTTTCTCCTCTTTCTTCTTTCTCTTTTCTCCTTCCATTTCCTCTCCATTGCAGCTTCTTTTCACTTCCACAAAAATGGTCTCACTCTTTCTTCGGACGACGATAATGATTGGGAATTTGTCATGAACCCCAACACTTTTAGCTCCCGCATTTGGATTGGAAACAACTGTAAATTTGACGAATTCGGGCAGCGCCACAAATGTCGAACCGTTGACTGTGACGGTGGCAACGGTGGTGGCAACTTCCTTCAAAGCCGAGCTTATGTGGACCGGGGCGGTGGCAGCCTTTTCCGGTGGCGAGCTTACGCAGATGACATCTTCAAATATGTGTCAAACAAATTGAATAATAATGTTGGGAGTAGCAATAGTTTAGTTAAATTATTGTTATTTGTGCTCTGTGAGTTTGAAAATGACGCTTGTAGTTTTCATCTTGAACTGCTTGTGAAAAACAACTTCAAGGAGTTTGATGAGATATAA

Coding sequence (CDS)

ATGGGAACCTCCATTTTCTTTCTCCTCTTTCTTCTTTCTCTTTTCTCCTTCCATTTCCTCTCCATTGCAGCTTCTTTTCACTTCCACAAAAATGGTCTCACTCTTTCTTCGGACGACGATAATGATTGGGAATTTGTCATGAACCCCAACACTTTTAGCTCCCGCATTTGGATTGGAAACAACTGTAAATTTGACGAATTCGGGCAGCGCCACAAATGTCGAACCGTTGACTGTGACGGTGGCAACGGTGGTGGCAACTTCCTTCAAAGCCGAGCTTATGTGGACCGGGGCGGTGGCAGCCTTTTCCGGTGGCGAGCTTACGCAGATGACATCTTCAAATATGTGTCAAACAAATTGAATAATAATGTTGGGAGTAGCAATAGTTTAGTTAAATTATTGTTATTTGTGCTCTGTGAGTTTGAAAATGACGCTTGTAGTTTTCATCTTGAACTGCTTGTGAAAAACAACTTCAAGGAGTTTGATGAGATATAA

Protein sequence

MGTSIFFLLFLLSLFSFHFLSIAASFHFHKNGLTLSSDDDNDWEFVMNPNTFSSRIWIGNNCKFDEFGQRHKCRTVDCDGGNGGGNFLQSRAYVDRGGGSLFRWRAYADDIFKYVSNKLNNNVGSSNSLVKLLLFVLCEFENDACSFHLELLVKNNFKEFDEI

Homology

[Close]

BLAST of ClCG01G003010.1 vs. TrEMBL
Match: A0A0A0KKL7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G155440 PE=4 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 2.2e-38
Identity = 90/141 (63.83%), Postives = 106/141 (75.18%), Query Frame = 1


Query: 1   MGTSIFFLLFLLSLFSFHF-LSIAASFHFHKNG-LTLSSDDDND-WEFVMNPNTFSSRIW 60
           MGT IFF LF++SLFSFHF LS AASF  H+NG  T S DD+ND W FVMNPNTFSS IW
Sbjct: 8   MGTPIFFFLFVVSLFSFHFGLSNAASFQVHENGPFTDSLDDNNDYWAFVMNPNTFSSSIW 67

Query: 61  IGNNCKFDEFGQRHKCRTVDCDGGNGGGN-FLQSRAYVDRGGGSLFRWRAYADDIFKYVS 120
           IG  CKFD      KC T DC  G+G  + FLQ +A+VD+GGGS FRWR YA+DI KYV 
Sbjct: 68  IGKKCKFDG-SVCSKCGTGDCSNGDGNDDMFLQKKAFVDKGGGSFFRWRYYANDIAKYVL 127

Query: 121 NKLNNNVGSSNSLVKLLLFVL 138
           +KLN+N+ +S SLVKLL+FV+
Sbjct: 128 DKLNSNIQTSYSLVKLLIFVV 147

[Close]

BLAST of ClCG01G003010.1 vs. NCBI nr
Match: gi|700194956|gb|KGN50133.1| (hypothetical protein Csa_5G155440 [Cucumis sativus])

HSP 1 Score: 166.8 bits (421), Expect = 3.2e-38
Identity = 90/141 (63.83%), Postives = 106/141 (75.18%), Query Frame = 1


Query: 1   MGTSIFFLLFLLSLFSFHF-LSIAASFHFHKNG-LTLSSDDDND-WEFVMNPNTFSSRIW 60
           MGT IFF LF++SLFSFHF LS AASF  H+NG  T S DD+ND W FVMNPNTFSS IW
Sbjct: 8   MGTPIFFFLFVVSLFSFHFGLSNAASFQVHENGPFTDSLDDNNDYWAFVMNPNTFSSSIW 67

Query: 61  IGNNCKFDEFGQRHKCRTVDCDGGNGGGN-FLQSRAYVDRGGGSLFRWRAYADDIFKYVS 120
           IG  CKFD      KC T DC  G+G  + FLQ +A+VD+GGGS FRWR YA+DI KYV 
Sbjct: 68  IGKKCKFDG-SVCSKCGTGDCSNGDGNDDMFLQKKAFVDKGGGSFFRWRYYANDIAKYVL 127

Query: 121 NKLNNNVGSSNSLVKLLLFVL 138
           +KLN+N+ +S SLVKLL+FV+
Sbjct: 128 DKLNSNIQTSYSLVKLLIFVV 147

The following BLAST results are available for this feature:

BLAST of ClCG01G003010.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KKL7_CUCSA	2.2e-38	63.83	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G155440 PE=4 SV=1	[more]

BLAST of ClCG01G003010.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700194956\|gb\|KGN50133.1\|	3.2e-38	63.83	hypothetical protein Csa_5G155440 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR001938	Thaumatin

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
ClCG01G003010	ClCG01G003010	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
ClCG01G003010.1	ClCG01G003010.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG01G003010.1.cds2	ClCG01G003010.1.cds2	CDS
ClCG01G003010.1.cds1	ClCG01G003010.1.cds1	CDS

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001938	Thaumatin	GENE3D	G3DSA:2.60.110.10		coord: 38..81 score: 9.
IPR001938	Thaumatin	unknown	SSF49870	Osmotin, thaumatin-like protein	coord: 32..81 score: 5.