ClCG01G003010 (gene) Watermelon (Charleston Gray)

Overview
NameClCG01G003010
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionUnknown protein
LocationCG_Chr01 : 3056023 .. 3056583 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAACCTCCATTTTCTTTCTCCTCTTTCTTCTTTCTCTTTTCTCCTTCCATTTCCTCTCCATTGCAGCTTCTTTTCACTTCCACAAAAATGGTCTCACTCTTTCTTCGGACGACGATAATGATTGGGAATTTGTCATGAACCCCAACACTTTTAGCTCCCGCATTTGGATTGGAAACAACTGTAAATTTGACGAATTCGGGCAGCGCCACAAATGTCGAACCGTTGACTGTGACGGTGGCAACGGTGGTGGCAACTTCCTTCAAAGCCGAGCTTATGTGGACCGGGGCGGTGGCAGCCTTTTCCGGTGGCGAGCTTACGCAGATGACATCTTCAAATATGTGTCAAACAAATTGAATAATAATGTTGGGAGTAGCAATAGTTTAGTTAAATTATTGTTATTTGTGCTCGTTCTTTAATTTCTTCGTTATGAAAAATACTTAGGGGTATCCTAAACACTTTCATTTCATTTAAATCAGTGTGAGTTTGAAAATGACGCTTGTAGTTTTCATCTTGAACTGCTTGTGAAAAACAACTTCAAGGAGTTTGATGAGATATAA

mRNA sequence

ATGGGAACCTCCATTTTCTTTCTCCTCTTTCTTCTTTCTCTTTTCTCCTTCCATTTCCTCTCCATTGCAGCTTCTTTTCACTTCCACAAAAATGGTCTCACTCTTTCTTCGGACGACGATAATGATTGGGAATTTGTCATGAACCCCAACACTTTTAGCTCCCGCATTTGGATTGGAAACAACTGTAAATTTGACGAATTCGGGCAGCGCCACAAATGTCGAACCGTTGACTGTGACGGTGGCAACGGTGGTGGCAACTTCCTTCAAAGCCGAGCTTATGTGGACCGGGGCGGTGGCAGCCTTTTCCGGTGGCGAGCTTACGCAGATGACATCTTCAAATATGTGTCAAACAAATTGAATAATAATGTTGGGAGTAGCAATAGTTTAGTTAAATTATTGTTATTTGTGCTCTGTGAGTTTGAAAATGACGCTTGTAGTTTTCATCTTGAACTGCTTGTGAAAAACAACTTCAAGGAGTTTGATGAGATATAA

Coding sequence (CDS)

ATGGGAACCTCCATTTTCTTTCTCCTCTTTCTTCTTTCTCTTTTCTCCTTCCATTTCCTCTCCATTGCAGCTTCTTTTCACTTCCACAAAAATGGTCTCACTCTTTCTTCGGACGACGATAATGATTGGGAATTTGTCATGAACCCCAACACTTTTAGCTCCCGCATTTGGATTGGAAACAACTGTAAATTTGACGAATTCGGGCAGCGCCACAAATGTCGAACCGTTGACTGTGACGGTGGCAACGGTGGTGGCAACTTCCTTCAAAGCCGAGCTTATGTGGACCGGGGCGGTGGCAGCCTTTTCCGGTGGCGAGCTTACGCAGATGACATCTTCAAATATGTGTCAAACAAATTGAATAATAATGTTGGGAGTAGCAATAGTTTAGTTAAATTATTGTTATTTGTGCTCTGTGAGTTTGAAAATGACGCTTGTAGTTTTCATCTTGAACTGCTTGTGAAAAACAACTTCAAGGAGTTTGATGAGATATAA

Protein sequence

MGTSIFFLLFLLSLFSFHFLSIAASFHFHKNGLTLSSDDDNDWEFVMNPNTFSSRIWIGNNCKFDEFGQRHKCRTVDCDGGNGGGNFLQSRAYVDRGGGSLFRWRAYADDIFKYVSNKLNNNVGSSNSLVKLLLFVLCEFENDACSFHLELLVKNNFKEFDEI
Homology
[Close]
BLAST of ClCG01G003010 vs. TrEMBL
Match: A0A0A0KKL7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G155440 PE=4 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 2.2e-38
Identity = 90/141 (63.83%), Postives = 106/141 (75.18%), Query Frame = 1 

Query: 1   MGTSIFFLLFLLSLFSFHF-LSIAASFHFHKNG-LTLSSDDDND-WEFVMNPNTFSSRIW 60
           MGT IFF LF++SLFSFHF LS AASF  H+NG  T S DD+ND W FVMNPNTFSS IW
Sbjct: 8   MGTPIFFFLFVVSLFSFHFGLSNAASFQVHENGPFTDSLDDNNDYWAFVMNPNTFSSSIW 67

Query: 61  IGNNCKFDEFGQRHKCRTVDCDGGNGGGN-FLQSRAYVDRGGGSLFRWRAYADDIFKYVS 120
           IG  CKFD      KC T DC  G+G  + FLQ +A+VD+GGGS FRWR YA+DI KYV 
Sbjct: 68  IGKKCKFDG-SVCSKCGTGDCSNGDGNDDMFLQKKAFVDKGGGSFFRWRYYANDIAKYVL 127

Query: 121 NKLNNNVGSSNSLVKLLLFVL 138
           +KLN+N+ +S SLVKLL+FV+
Sbjct: 128 DKLNSNIQTSYSLVKLLIFVV 147

[Close]
BLAST of ClCG01G003010 vs. NCBI nr
Match: gi|700194956|gb|KGN50133.1| (hypothetical protein Csa_5G155440 [Cucumis sativus])

HSP 1 Score: 166.8 bits (421), Expect = 3.2e-38
Identity = 90/141 (63.83%), Postives = 106/141 (75.18%), Query Frame = 1 

Query: 1   MGTSIFFLLFLLSLFSFHF-LSIAASFHFHKNG-LTLSSDDDND-WEFVMNPNTFSSRIW 60
           MGT IFF LF++SLFSFHF LS AASF  H+NG  T S DD+ND W FVMNPNTFSS IW
Sbjct: 8   MGTPIFFFLFVVSLFSFHFGLSNAASFQVHENGPFTDSLDDNNDYWAFVMNPNTFSSSIW 67

Query: 61  IGNNCKFDEFGQRHKCRTVDCDGGNGGGN-FLQSRAYVDRGGGSLFRWRAYADDIFKYVS 120
           IG  CKFD      KC T DC  G+G  + FLQ +A+VD+GGGS FRWR YA+DI KYV 
Sbjct: 68  IGKKCKFDG-SVCSKCGTGDCSNGDGNDDMFLQKKAFVDKGGGSFFRWRYYANDIAKYVL 127

Query: 121 NKLNNNVGSSNSLVKLLLFVL 138
           +KLN+N+ +S SLVKLL+FV+
Sbjct: 128 DKLNSNIQTSYSLVKLLIFVV 147

The following BLAST results are available for this feature:
BLAST of ClCG01G003010 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KKL7_CUCSA2.2e-3863.83Uncharacterized protein OS=Cucumis sativus GN=Csa_5G155440 PE=4 SV=1[more]
BLAST of ClCG01G003010 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700194956|gb|KGN50133.1|3.2e-3863.83hypothetical protein Csa_5G155440 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001938Thaumatin
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG01G003010.1ClCG01G003010.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001938ThaumatinGENE3DG3DSA:2.60.110.10coord: 38..81
score: 9.
IPR001938ThaumatinunknownSSF49870Osmotin, thaumatin-like proteincoord: 32..81
score: 5.

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
ClCG01G003010Csa5G155440Cucumber (Chinese Long) v2cuwcgB364
ClCG01G003010Bhi12G000214Wax gourdwcgwgoB198
ClCG01G003010CsaV3_5G003130Cucumber (Chinese Long) v3cucwcgB385
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG01G003010Cucurbita moschata (Rifu)cmowcgB285
ClCG01G003010Cucurbita moschata (Rifu)cmowcgB348
ClCG01G003010Cucurbita moschata (Rifu)cmowcgB516
ClCG01G003010Wild cucumber (PI 183967)cpiwcgB210
ClCG01G003010Wild cucumber (PI 183967)cpiwcgB379
ClCG01G003010Cucumber (Chinese Long) v2cuwcgB208
ClCG01G003010Melon (DHL92) v3.5.1mewcgB018
ClCG01G003010Melon (DHL92) v3.5.1mewcgB422
ClCG01G003010Watermelon (97103) v1wcgwmB137
ClCG01G003010Watermelon (97103) v1wcgwmB142
ClCG01G003010Cucurbita pepo (Zucchini)cpewcgB008
ClCG01G003010Cucurbita pepo (Zucchini)cpewcgB023
ClCG01G003010Cucurbita pepo (Zucchini)cpewcgB165
ClCG01G003010Cucurbita pepo (Zucchini)cpewcgB202
ClCG01G003010Cucurbita pepo (Zucchini)cpewcgB639
ClCG01G003010Bottle gourd (USVL1VR-Ls)lsiwcgB008
ClCG01G003010Bottle gourd (USVL1VR-Ls)lsiwcgB322
ClCG01G003010Cucumber (Gy14) v2cgybwcgB191
ClCG01G003010Cucumber (Gy14) v2cgybwcgB332
ClCG01G003010Melon (DHL92) v3.6.1medwcgB016
ClCG01G003010Melon (DHL92) v3.6.1medwcgB408
ClCG01G003010Silver-seed gourdcarwcgB0898
ClCG01G003010Silver-seed gourdcarwcgB0912
ClCG01G003010Cucumber (Chinese Long) v3cucwcgB212
ClCG01G003010Watermelon (97103) v2wcgwmbB089
ClCG01G003010Watermelon (97103) v2wcgwmbB109
ClCG01G003010Wax gourdwcgwgoB207
ClCG01G003010Watermelon (Charleston Gray)wcgwcgB101
ClCG01G003010Cucurbita moschata (Rifu)cmowcgB247
ClCG01G003010Cucumber (Gy14) v1cgywcgB520
ClCG01G003010Cucurbita maxima (Rimu)cmawcgB259
ClCG01G003010Cucurbita maxima (Rimu)cmawcgB292
ClCG01G003010Cucurbita maxima (Rimu)cmawcgB352
ClCG01G003010Cucurbita maxima (Rimu)cmawcgB518