Carg27569-RA (mRNA) Silver-seed gourd
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGATACAACTTTTCATTGGGATGTGAAGAACAAAGTGATATCAAGAACATCTTCAATTGGTTGCTCTTCTCGCAGCATTTACTATTGTGGAACACCTGAAGGTGTCCCTTTCAAATGGGAAACACAGCCAGGAACTCCCAAAGATCCACCCCCTCAAGACATGCTTCCGCCCCTCACCCCTCCCCCGGCGGTTCTCAGTCTCGGGTTACCGAAACCGTGTATCGAACAACCGAAAACCCGACCTCGACCCCTGATAAGGCTTCGGTTTTGGAGGAGAAGCAAGAAGAATGGTAAGAGAGATGCCCGAGCTAGAACTATTGACTATAGTAATGAAGATCGTTTTGGTCACCCTGATAAGTTGGAGACGTTTTCGTTTCTTAGCTCTGATTGTGAGTTCATGACATCGTCTCGGAATTCTATGTCGTCGTCGCCGTCGTTGTCTTTGTCTTCTTCTTCATCACCATCGTCATTCTTCGAGTCGTTAACTGTACGTCGACGTCTGAATTGTAATGCTTGGCAAATTAACCGGATTCTAGCTTGTTACCATTGCTAG ATGGATACAACTTTTCATTGGGATGTGAAGAACAAAGTGATATCAAGAACATCTTCAATTGGTTGCTCTTCTCGCAGCATTTACTATTGTGGAACACCTGAAGGTGTCCCTTTCAAATGGGAAACACAGCCAGGAACTCCCAAAGATCCACCCCCTCAAGACATGCTTCCGCCCCTCACCCCTCCCCCGGCGGTTCTCAGTCTCGGGTTACCGAAACCGTGTATCGAACAACCGAAAACCCGACCTCGACCCCTGATAAGGCTTCGGTTTTGGAGGAGAAGCAAGAAGAATGGTAAGAGAGATGCCCGAGCTAGAACTATTGACTATAGTAATGAAGATCGTTTTGGTCACCCTGATAAGTTGGAGACGTTTTCGTTTCTTAGCTCTGATTGTGAGTTCATGACATCGTCTCGGAATTCTATGTCGTCGTCGCCGTCGTTGTCTTTGTCTTCTTCTTCATCACCATCGTCATTCTTCGAGTCGTTAACTGTACGTCGACGTCTGAATTGTAATGCTTGGCAAATTAACCGGATTCTAGCTTGTTACCATTGCTAG ATGGATACAACTTTTCATTGGGATGTGAAGAACAAAGTGATATCAAGAACATCTTCAATTGGTTGCTCTTCTCGCAGCATTTACTATTGTGGAACACCTGAAGGTGTCCCTTTCAAATGGGAAACACAGCCAGGAACTCCCAAAGATCCACCCCCTCAAGACATGCTTCCGCCCCTCACCCCTCCCCCGGCGGTTCTCAGTCTCGGGTTACCGAAACCGTGTATCGAACAACCGAAAACCCGACCTCGACCCCTGATAAGGCTTCGGTTTTGGAGGAGAAGCAAGAAGAATGGTAAGAGAGATGCCCGAGCTAGAACTATTGACTATAGTAATGAAGATCGTTTTGGTCACCCTGATAAGTTGGAGACGTTTTCGTTTCTTAGCTCTGATTGTGAGTTCATGACATCGTCTCGGAATTCTATGTCGTCGTCGCCGTCGTTGTCTTTGTCTTCTTCTTCATCACCATCGTCATTCTTCGAGTCGTTAACTGTACGTCGACGTCTGAATTGTAATGCTTGGCAAATTAACCGGATTCTAGCTTGTTACCATTGCTAG MDTTFHWDVKNKVISRTSSIGCSSRSIYYCGTPEGVPFKWETQPGTPKDPPPQDMLPPLTPPPAVLSLGLPKPCIEQPKTRPRPLIRLRFWRRSKKNGKRDARARTIDYSNEDRFGHPDKLETFSFLSSDCEFMTSSRNSMSSSPSLSLSSSSSPSSFFESLTVRRRLNCNAWQINRILACYHC
BLAST of Carg27569-RA vs. NCBI nr
Match: XP_022938321.1 (putative protein TPRXL [Cucurbita moschata]) HSP 1 Score: 332.0 bits (850), Expect = 1.3e-87 Identity = 167/180 (92.78%), Postives = 169/180 (93.89%), Query Frame = 0
BLAST of Carg27569-RA vs. NCBI nr
Match: XP_022929606.1 (uncharacterized protein LOC111436141 [Cucurbita moschata]) HSP 1 Score: 226.9 bits (577), Expect = 5.7e-56 Identity = 135/194 (69.59%), Postives = 151/194 (77.84%), Query Frame = 0
BLAST of Carg27569-RA vs. NCBI nr
Match: XP_023546389.1 (uncharacterized protein LOC111805512 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 224.9 bits (572), Expect = 2.2e-55 Identity = 133/194 (68.56%), Postives = 150/194 (77.32%), Query Frame = 0
BLAST of Carg27569-RA vs. NCBI nr
Match: XP_022997465.1 (uncharacterized protein LOC111492375 [Cucurbita maxima]) HSP 1 Score: 224.6 bits (571), Expect = 2.8e-55 Identity = 138/194 (71.13%), Postives = 152/194 (78.35%), Query Frame = 0
BLAST of Carg27569-RA vs. NCBI nr
Match: XP_022153305.1 (uncharacterized protein LOC111020830 [Momordica charantia]) HSP 1 Score: 221.5 bits (563), Expect = 2.4e-54 Identity = 129/187 (68.98%), Postives = 142/187 (75.94%), Query Frame = 0
BLAST of Carg27569-RA vs. TAIR10
Match: AT4G25845.1 (BEST Arabidopsis thaliana protein match is: OSBP(oxysterol binding protein)-related protein 4B (TAIR:AT4G25850.2)) HSP 1 Score: 74.3 bits (181), Expect = 8.6e-14 Identity = 44/82 (53.66%), Postives = 57/82 (69.51%), Query Frame = 0
BLAST of Carg27569-RA vs. TAIR10
Match: AT5G01790.1 (unknown protein) HSP 1 Score: 45.4 bits (106), Expect = 4.3e-05 Identity = 34/89 (38.20%), Postives = 43/89 (48.31%), Query Frame = 0
BLAST of Carg27569-RA vs. TrEMBL
Match: tr|A0A0A0LHA2|A0A0A0LHA2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G059740 PE=4 SV=1) HSP 1 Score: 157.5 bits (397), Expect = 2.8e-35 Identity = 79/111 (71.17%), Postives = 93/111 (83.78%), Query Frame = 0
BLAST of Carg27569-RA vs. TrEMBL
Match: tr|A0A2I4FHG1|A0A2I4FHG1_9ROSI (uncharacterized protein LOC108998834 OS=Juglans regia OX=51240 GN=LOC108998834 PE=4 SV=1) HSP 1 Score: 131.7 bits (330), Expect = 1.7e-27 Identity = 84/178 (47.19%), Postives = 108/178 (60.67%), Query Frame = 0
BLAST of Carg27569-RA vs. TrEMBL
Match: tr|A0A2P6QTB2|A0A2P6QTB2_ROSCH (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr4g0402361 PE=4 SV=1) HSP 1 Score: 127.5 bits (319), Expect = 3.1e-26 Identity = 71/127 (55.91%), Postives = 88/127 (69.29%), Query Frame = 0
BLAST of Carg27569-RA vs. TrEMBL
Match: tr|A0A2P5DRN1|A0A2P5DRN1_PARAD (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_038800 PE=4 SV=1) HSP 1 Score: 126.7 bits (317), Expect = 5.3e-26 Identity = 87/188 (46.28%), Postives = 113/188 (60.11%), Query Frame = 0
BLAST of Carg27569-RA vs. TrEMBL
Match: tr|M5XJH2|M5XJH2_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppa019983mg PE=4 SV=1) HSP 1 Score: 124.4 bits (311), Expect = 2.6e-25 Identity = 72/136 (52.94%), Postives = 92/136 (67.65%), Query Frame = 0
The following BLAST results are available for this feature:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
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