Carg27482-RA (mRNA) Silver-seed gourd
The following sequences are available for this feature:
Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGTTGGGTAAACTCTCTCATGAGTCCGTGATCCACGCGCCAGCCACCGTGGCATGGCAGCTCTACGGAGGTCTTGAACTTGCACGACTTGTCGAAAACCGCTTCTCGAACCTTATCCAAAAAATTGAGGTGGTTGAAGGCGACGGAGGAGAAGGAACGATTCTTAATCTTATTTTCCCATCAGGTAACAGTTTCTAATAATCTTCGTCTTGTTTTCGGCTTTTAAACTTCTTATACATATTTTTTCATTCAATATTTGATACGTCGTTCGGTTTGAGAGTTGTTTTATTGAAGACTTGTTTTTATTGATGTCTCAATTTTATGTAAATGTCTCCATTTGTTAATGTAAATTTCTAAGACAAAATTATATATATAAAAAAAGAAGATAATATTAAAAGAATATTTAATATTTATATTATATTATATTATATTATATTAAGGACATTTTGTTATTATTTTTTTTATGTTTTAAATTTATTTAAGATTTCTTGAGTTTTTCTTTTAAAATGTGAATTATACCAAAGAATTGGTCTACCTTTAAACATAGTAAATTAAAAATGAAATTCTTATAATGATTTTGATGTTATTAATGAGTTTGTTTGTAGTTTGATGTTACTAATGATTTTGATGTTACTAATGATTTTGATGTTTTATTTTTGAGGTTTACTTGGAATGAATTTCACATGATTAATTTTTACTAAAAAGGGTTTTAATAATTTAAAACTAAAACCCAAATATTTATTAAATAGAGGTTTAATAAAAGGTTGAATTGAATTATTAATTATTTTGGAGAGAAATTTGATTTAAAATACGATTAATTCAATGAAGCCGATGCAATGTATATGAACTAAATCATCATAATACTACTAAACTTCACGTATTAAATTGTTACAAATTTAAAAATTATAAGAGTAAATATACGTGTAAGAGTGCTGACTTAATCTACAAGTAATGTAAGAGATTTGATATATAAGGTTAAACTAGAGCACGTCATGTGGATTTGATTTAACGAAACAAAAATTTACATACAAATGCAGGTGTAGGTCGTTTCTCAAGTTTTAAAGAGAAATTCACAAGCATAGATAATGAGAATCGTATAAAAAGAGACGGATAGCTGCATTGTTGAATCCACAATTGAATATGAAATAAAGGAAGAAGCTGCTGCAAATGCCTCACTTGTTAATATACAATTTTTCATAGACATTGGTCAAACAGCAAACGACCATCTACTTCACAACAAACAGCCTAAAGATGCATAG ATGTTGGGTAAACTCTCTCATGAGTCCGTGATCCACGCGCCAGCCACCGTGGCATGGCAGCTCTACGGAGGTCTTGAACTTGCACGACTTGTCGAAAACCGCTTCTCGAACCTTATCCAAAAAATTGAGGTGGTTGAAGGCGACGGAGGAGAAGGAACGATTCTTAATCTTATTTTCCCATCAGGTGTAGGTCGTTTCTCAAGTTTTAAAGAGAAATTCACAAGCATAGATAATGAGAATCAGACGGATAGCTGCATTGTTGAATCCACAATTGAATATGAAATAAAGGAAGAAGCTGCTGCAAATGCCTCACTTGTTAATATACAATTTTTCATAGACATTGGTCAAACAGCAAACGACCATCTACTTCACAACAAACAGCCTAAAGATGCATAG ATGTTGGGTAAACTCTCTCATGAGTCCGTGATCCACGCGCCAGCCACCGTGGCATGGCAGCTCTACGGAGGTCTTGAACTTGCACGACTTGTCGAAAACCGCTTCTCGAACCTTATCCAAAAAATTGAGGTGGTTGAAGGCGACGGAGGAGAAGGAACGATTCTTAATCTTATTTTCCCATCAGGTGTAGGTCGTTTCTCAAGTTTTAAAGAGAAATTCACAAGCATAGATAATGAGAATCAGACGGATAGCTGCATTGTTGAATCCACAATTGAATATGAAATAAAGGAAGAAGCTGCTGCAAATGCCTCACTTGTTAATATACAATTTTTCATAGACATTGGTCAAACAGCAAACGACCATCTACTTCACAACAAACAGCCTAAAGATGCATAG MLGKLSHESVIHAPATVAWQLYGGLELARLVENRFSNLIQKIEVVEGDGGEGTILNLIFPSGVGRFSSFKEKFTSIDNENQTDSCIVESTIEYEIKEEAAANASLVNIQFFIDIGQTANDHLLHNKQPKDA
BLAST of Carg27482-RA vs. NCBI nr
Match: XP_023513284.1 (S-norcoclaurine synthase 2-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 231.9 bits (590), Expect = 1.3e-57 Identity = 123/160 (76.88%), Postives = 126/160 (78.75%), Query Frame = 0
BLAST of Carg27482-RA vs. NCBI nr
Match: XP_022944468.1 (S-norcoclaurine synthase 2-like [Cucurbita moschata]) HSP 1 Score: 229.6 bits (584), Expect = 6.3e-57 Identity = 122/160 (76.25%), Postives = 124/160 (77.50%), Query Frame = 0
BLAST of Carg27482-RA vs. NCBI nr
Match: XP_022986627.1 (S-norcoclaurine synthase 2-like [Cucurbita maxima]) HSP 1 Score: 200.7 bits (509), Expect = 3.1e-48 Identity = 109/160 (68.12%), Postives = 116/160 (72.50%), Query Frame = 0
BLAST of Carg27482-RA vs. NCBI nr
Match: XP_022943440.1 (S-norcoclaurine synthase 1-like [Cucurbita moschata]) HSP 1 Score: 200.3 bits (508), Expect = 4.1e-48 Identity = 109/160 (68.12%), Postives = 116/160 (72.50%), Query Frame = 0
BLAST of Carg27482-RA vs. NCBI nr
Match: XP_023513283.1 (S-norcoclaurine synthase 1-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 193.0 bits (489), Expect = 6.5e-46 Identity = 106/160 (66.25%), Postives = 114/160 (71.25%), Query Frame = 0
BLAST of Carg27482-RA vs. Swiss-Prot
Match: sp|Q4QTJ1|NCS2_PAPSO (S-norcoclaurine synthase 2 OS=Papaver somniferum OX=3469 GN=NCS2 PE=1 SV=1) HSP 1 Score: 61.6 bits (148), Expect = 7.4e-09 Identity = 39/154 (25.32%), Postives = 76/154 (49.35%), Query Frame = 0
BLAST of Carg27482-RA vs. Swiss-Prot
Match: sp|Q4QTJ2|NCS1_PAPSO (S-norcoclaurine synthase 1 OS=Papaver somniferum OX=3469 GN=NCS1 PE=1 SV=1) HSP 1 Score: 58.9 bits (141), Expect = 4.8e-08 Identity = 37/154 (24.03%), Postives = 74/154 (48.05%), Query Frame = 0
BLAST of Carg27482-RA vs. Swiss-Prot
Match: sp|A2A1A1|NCS2_COPJA (S-norcoclaurine synthase 2 OS=Coptis japonica OX=3442 GN=PR10A PE=2 SV=2) HSP 1 Score: 51.2 bits (121), Expect = 1.0e-05 Identity = 39/127 (30.71%), Postives = 58/127 (45.67%), Query Frame = 0
BLAST of Carg27482-RA vs. TrEMBL
Match: tr|A0A1S3CA50|A0A1S3CA50_CUCME (S-norcoclaurine synthase 2-like OS=Cucumis melo OX=3656 GN=LOC103498383 PE=4 SV=1) HSP 1 Score: 161.0 bits (406), Expect = 1.8e-36 Identity = 88/158 (55.70%), Postives = 104/158 (65.82%), Query Frame = 0
BLAST of Carg27482-RA vs. TrEMBL
Match: tr|A0A0A0LNC6|A0A0A0LNC6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G439140 PE=4 SV=1) HSP 1 Score: 160.6 bits (405), Expect = 2.4e-36 Identity = 88/158 (55.70%), Postives = 103/158 (65.19%), Query Frame = 0
BLAST of Carg27482-RA vs. TrEMBL
Match: tr|A0A2N9IYT5|A0A2N9IYT5_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS57201 PE=4 SV=1) HSP 1 Score: 139.4 bits (350), Expect = 5.7e-30 Identity = 73/160 (45.62%), Postives = 98/160 (61.25%), Query Frame = 0
BLAST of Carg27482-RA vs. TrEMBL
Match: tr|A0A2P4KZR2|A0A2P4KZR2_QUESU (S-norcoclaurine synthase 2 OS=Quercus suber OX=58331 GN=CFP56_68018 PE=4 SV=1) HSP 1 Score: 133.7 bits (335), Expect = 3.1e-28 Identity = 72/159 (45.28%), Postives = 97/159 (61.01%), Query Frame = 0
BLAST of Carg27482-RA vs. TrEMBL
Match: tr|A0A2I4FBE1|A0A2I4FBE1_9ROSI (S-norcoclaurine synthase 2-like OS=Juglans regia OX=51240 GN=LOC108997241 PE=4 SV=1) HSP 1 Score: 129.0 bits (323), Expect = 7.6e-27 Identity = 77/156 (49.36%), Postives = 87/156 (55.77%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
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