Carg27205-RA (mRNA) Silver-seed gourd

Overview
NameCarg27205-RA
TypemRNA
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionUnknown protein
LocationCucurbita_argyrosperma_scaffold_351 : 78715 .. 83750 (-)
Sequence length441
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
TCTTTAACCTTCAACGTCATAATTTCTCAGTTTTTTCGACATGGGTCTGCGGATTTCTCTTTTAAATGGAGTTCTATTCATACGTATGTCCGTTGCAGCACTTTGAGTGCATTTTCGCTTGTTCATAATGCGGTGTATGAAAAATAGATGCACGATTTTGTGGGGTAATCAAGTTGGTTATGTAGTGTTTTTGTGGGGAGTGCGATTATTGAAATGTATGCAAAAATTTGACTGATTAGTGATGCAGATGAAGTGTTTGATGAAATGCCCATGAGGAATACTGTGTGTGTGCAAATGCACTATTGACTAGATATGGCAAGGCTAGGATGTGGGTGCATGGACTTGAATTGAATGTATGCAAAAATTTAACTGATTAGTGATGCAGATGAAGTGTTTGATGAAATGCCCATGAGGAATATTGTGTGTACAAATGCACTATTGGCTAGATATGGCAAGGCTAGGATGTGGGTCCATGGACTTGAATTGCTATGGGAGATGCACGATTTGGATTCAGCTCTTTTACGTGCATGCGCTAGTTTATCTTGTTGAGGATTATTGAGAGGAGTAGTCCCATGTTGGCTAATTAAGAGGAAGATAATGAATTTATAACTAAGGAACACTATCTCCATTGGTACGAGGCCTTTCGGGGGGAACCAAAAGCAAAGCCACGAGAGCTTATACTCAAAGTGGATAATATCATACCATTGTGGAGAGTCGTGATTTCTAACACTACAATGACACTAGGTGAGCAAGTGCATGCTTATCTACTACGAACGGTTTATGATATTACCAGTGATGAGGATCTACAAAGAACATTAATTGAAATGTTTGGGAAGAGTGGCATAGTAGAAATAGCATGGCATGTATTCAATTTCGCAGGACTTGGACAAAAAGAAAAGGGATATTCTAGTATGGACTTCTATGTTTAGTGTATATGGTAGAAACGGATTGAACCGTACAACCAGATGTTGATGGAAGGGATCAAACCAGATAGTGTAGCTTTTGCGACAGTCATATCAGCTTCGTACACCATTTGTTCGACACTTGAGTCACTTTTGACTACACCTTCAAGACTTATAACTTCTTTATTCGACATTGGAGGATTCTATTGACATGGCTAAATTAAGGGCATAACTCTGATACCATGTTAGGAATCACAGATCTCCGTAATAGTATGATATCACTTCACTTTGAGCATAAGCTCTCATGGCTTTACTTTGGGCTTTCCCAAAAGGCCTCATATACCAATGAAGATGTATTCCTTACTTATAAACCCATGATCATTCCCTAAATTAGCCAATGTAAGACTCCCTTCCAACAATTCTCAATCGTAGGGCACTTGAATTGGATCCTTAGAATGCTCGGATATTCATTATGCTGGGTTTTAGCTTGTGGAATGAGATGCATTTGAGGCAATTTGTGAGAAAAGAATGGCTGTATAAAGCTGTTGGATAGTGTTGAATAGCGTTTATTCATATAACCTTTTGTAAAGTTAAACTGCTCAAGTAACCTATTTTTATGAGGAAATGGTTTCTCATGAGGTGCCATGATGAAAACGTTTCATTTAGCCTATGAGAGTTTTAGCTTGTATCACAGATATCAGTCTGACCTGTAAGGACTCTCAGCCACATGGATAGTTCAATCAGCTTGTGAATCATTCATATATACTTCTATGAACAAGAAACAAGAAACTAAGCCATTAATCTTGATGAGGTAGCTACATGTCATGATCTTTTCTTGCTTAGTTCTTTTCTATTACTCGAAAGCTCAGATTGTTGAACGTAGATGACAAAGTAAGGTTGATGATATCAAGTCCAGGTGTAGATAACGATGTTCAAGCACAGCTTTGTTAATTTCCTGACTTGCCTATCTTTTTCTTGGGACACTCGCTCTCTTTCCAAAGGATGATAGACATGCACATAGACACATATCAGCTACAATTTTAAGAAATCAGTACATGAATTAGAATGTCATCATTCAATGTTTTCAACTTTGTTTTGGCTGGAAGTATGCATGAGTTTACAATCCAGCGGTTGCTTCTTGGCATATATATTCTGACATGTATGTCGTGTACATCTCAGGGAGAGAAGCCTTCATGTAATGGCCCAAGCCTATCGCTAGCAGATATTGTCCTCTTTGGACTTTCCCTTTCGGGCTTCCCCTCAAGGTTTTTTAAAACTCGTTTGCTAGGGAGAGGTTTCCACACCCTTATAAAGGGTATTTTGTTCTCCTCCCCAACCGAGTTGGGATATCACAATCCACCCCCCTTTAAGGCCCAGTATCCCCACTGGCACTCGCTCCTTTCTCCGATCGATGTGGGATCCCTACCAAATCCACCCCCCTTCGAGGCTCAACATCCTTACTAGCACACCGCCTTGTGTCTACCCCTGTTCGGGGAACAACCTCTTCACTGACACATCGCGCCCGGTGTCTAGCTCTGATACCATTTGTAATAGTCCAAGCCCACCACTAGTAGATATTGTCCTCTTTGGGCTTTCCCTTTCGGGCTTCCCCTCAAGTTTTTTTAAAACTCATCTGCTAGGGATAGGTTTCCACACCCTTATAAAGGGTGTTTCGTTCTCCTCCCCAACCGATGTGGGATATCACAATTACTACCCCCTTCAGGTCCCAACGTTCCCACTGGCACTCGTTCCTTTCTCCAATCGATGCAGGGACCCCTGTCAAATCCACCCCCTTTCGGGGCCAGCGTTCTTACTGGCACACCGCCTTGTGTCTACCCCTCTTCGGGGAACAACCTCCTCGCTGGCACATCGCCCGATGTCTAGCTCTGATACCATTTGTAATGGTCCAAGCCCACCGCTAGTAGATATTGTCCTCTTTGGGCTTTCCCTTTCGAGCTTCCCCTTAAGATTTTTAAAACGCGCTTGCTAGGGAGAGGTTTCCACACCCTTATAAACGGTGTTTCGTTCTCCTCCCAAACCGACATGGGATATCACACTTCAACTGTTAGTACTTTTAACTGTCCATCTCTTTGTTAATAGTTGCAAAAACCTTTTATAGAGCTTCATTAAGATTATATCCCAAGAACTAGGAGTAACATTAACCATTATGTTTAATCATTCATTTTGTTTATGGTTTGAAATCTTGCAGTATGAGCTGCCAAGCTTTTCAAATGCAGGTATCTTCCAATGATCAACAAGGTTCTTTTCTAAACTAAGTTGAGTATGAATTCCACCTCTTTTTCCATTAGTTTAACCAATGTTGCATCGAAACACTAGTCGATGACAAAGTTGTTAGCACAAGGACCTTTGTGATTGATATCACTTGATCTTAACCCTCTAACTTCCACTGTAAAGGCCCCACCCCGTTGCTTTTTATCTTTTGCTTTCGCTGTTGCTACCTATTTGATCTGTGTTCTAATGCTCTCCCTATGCTATCTATCTGCAAGTGGAAGATTAAATAATGTTATCATGAATTGTGATTTGATCTTTCTTGTTTGGTTTGAACAGATTCAGAATCTTTACCATTTCTAAATTTAGGTGACTTTGTATGATCATCATAAAGAACTCATTAACTTCTAAAATGTTATTATGAATAAGATTTTCATTTTGCTGCTTGATAGTGAATTGTTCATTATTAGCTCTTTGCAAAATGATCTTGACAGATCAGGGCTGGACTACTAGTGTTCGGAACCGACGTTTTCGAGCGAAAATACTGGAAGGTTGTAATATTTGATCCCATCATTCTAATTCAAACAGTATTATTATGAAACTTGTCGTCAATTGTACTCTGTTTTCTCTGTAATTGATATGATTTCTTCCTTCTGAAACATATAGGCATCGCATATCAAAGGAAAATTTCAGGGCAAAGTTCATAGGATGTTGCAGAATACACATGATCAATCACAGACCTTTCTCCAGTACATGGCTTTTAATGGGGATGGGACCCTATGGCCCTTCTTTTGGTTTGGACCTGCATGTGCAGCCATGTTCATTGTGACGATTTCGTATCAATCTTGCTCTTGTTTCGCAAATTTTCTTACGAGGTACAACACGATCCTATCCTCGAGTTTTATATTAGCTCCATCAATTTCTTGATCGGTTGAAATGTTCAATTTCCATCCCGATCAATCATTGTTTCATTGTGCTTCTAATCCAGGTTTCTTATTGTAACGGCTCAAGCTCGCCGTTAGCAGATAGTGTCCTCTTTGGATTTTCTGTTTCGGGCTTCCCCTTAAGGTTTTTAGAACGCGTCTGCTAGGGAGAGGTTTCCACACCCTTATAAAAGGTGTTTCGTGTTTCGGGCTTCCCCTTAAGGTTTTTAGAACGCGTCTGCTAGAGAGAGGTTTCCACACCCTTATAAAAGGTGTTTCGTGTTTCGGGTTTCCCCTTGAGGTTTTTAGAACACGTCTGCTAAGGAGAGGATTTCACACCTTTATAAAAGGTGTTTTGTTCTCCTCCCAACCAATGTGGGGTCTCACAATCCATCCCTCTTCGGGGTCCAGCGTCCTCGCTGGCACTCGTTCCCTTCTCCAATCGATGTGGAACCCTACAATCCACCTTCCTTGGGGCCCAACGTCCTTGCTGGCACACCGCCTCATATCCACCCCCTTCGGGGCTCAGCTTTCTCACTAGCACATCGCCGATGTTTAGCTCTAATACCATTTGTAACGGCTCAAGCTCACCATTAGCAGATATTGTCCTTTTTGGGTTTTCCCTTTCAAGCTTCCCCTCAAGGTTCTTAAAACATATATGCTAGGAAGAGGTTTCCACACCCTTTATAAGGGTGTTCCGTTCTCCTCCCCAACCAATATGGTATCTCACACTTATACTCTACACCCTCGACGTCTTTCAACCATATGAAATGTATGCATATTGTGGTTTGAGTTGCTGCAGATTACACCCAAACTCCCAACCAGAAAACTAATGTGGCGGCCTGCTGCAGGCTACATCTTCAGCATGCCTATCAAACCGGTCATCTCGACGACGACATCCCACATGAGGCTAACCTCTGCTAGCCAGACTGCCAGAATTGAAATGCTTGTTTCTCGGTTCGTGCAGCAGCTGGCGATCGAG

mRNA sequence

TCTTTAACCTTCAACTTTTTTCGACATGGGTCTGCGGATTTCTCTTTTAAATGGAGTTCTATTCATACGTATGTCCGTTGCAGCACTTTGAGTGCATTTTCGCTTGTTCATAATGCGGAATACTGTGTGTGTGCAAATGCACTATTGACTAGATATGGCAAGGCTAGGATGTGGGTGCATGGACTTGAATTGAATAGTGGCATAGTAGAAATAGCATGGCATGTATTCAATTTCGCAGGACTTGGACAAAAAGAAAAGGGATATTCTAGTATGGACTTCTATTATGAGCTGCCAAGCTTTTCAAATGCAGGCTACATCTTCAGCATGCCTATCAAACCGGTCATCTCGACGACGACATCCCACATGAGGCTAACCTCTGCTAGCCAGACTGCCAGAATTGAAATGCTTGTTTCTCGGTTCGTGCAGCAGCTGGCGATCGAG

Coding sequence (CDS)

TCTTTAACCTTCAACTTTTTTCGACATGGGTCTGCGGATTTCTCTTTTAAATGGAGTTCTATTCATACGTATGTCCGTTGCAGCACTTTGAGTGCATTTTCGCTTGTTCATAATGCGGAATACTGTGTGTGTGCAAATGCACTATTGACTAGATATGGCAAGGCTAGGATGTGGGTGCATGGACTTGAATTGAATAGTGGCATAGTAGAAATAGCATGGCATGTATTCAATTTCGCAGGACTTGGACAAAAAGAAAAGGGATATTCTAGTATGGACTTCTATTATGAGCTGCCAAGCTTTTCAAATGCAGGCTACATCTTCAGCATGCCTATCAAACCGGTCATCTCGACGACGACATCCCACATGAGGCTAACCTCTGCTAGCCAGACTGCCAGAATTGAAATGCTTGTTTCTCGGTTCGTGCAGCAGCTGGCGATCGAG

Protein sequence

SLTFNFFRHGSADFSFKWSSIHTYVRCSTLSAFSLVHNAEYCVCANALLTRYGKARMWVHGLELNSGIVEIAWHVFNFAGLGQKEKGYSSMDFYYELPSFSNAGYIFSMPIKPVISTTTSHMRLTSASQTARIEMLVSRFVQQLAIE
Homology
[Close]
BLAST of Carg27205-RA vs. NCBI nr
Match: XP_022146156.1 (pentatricopeptide repeat-containing protein At4g21300-like [Momordica charantia])

HSP 1 Score: 53.5 bits (127), Expect = 6.9e-04
Identity = 61/208 (29.33%), Postives = 69/208 (33.17%), Query Frame = 0 

Query: 1   SLTFN-----FFRHGSAD-----FSFKWSS---IHTYVRCSTLSAFSLVHNAEY------ 60
           SLTFN     F R+GSAD     FSF  S+   I +Y  CSTLSA SLV N  +      
Sbjct: 83  SLTFNIIIADFCRNGSADFALMAFSFMHSNGVPIDSYALCSTLSACSLVQNVMFGKQMHA 142

Query: 61  -----------------------------------------CVCANALLTRYGKARMWVH 88
                                                     VCANALL  YG+A+MWV 
Sbjct: 143 FVGKSGWLSSVFVGSAIVDLYAKNGLIGDAVEVFDEIPMKNTVCANALLAGYGEAKMWVE 202

The following BLAST results are available for this feature:
BLAST of Carg27205-RA vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022146156.16.9e-0429.33pentatricopeptide repeat-containing protein At4g21300-like [Momordica charantia][more]
BLAST of Carg27205-RA vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Carg27205-RA vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg27205-RA vs. TrEMBL
Match NameE-valueIdentityDescription
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Carg27205Carg27205gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Carg27205-RACarg27205-RA-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg27205-RA.CDS.6Carg27205-RA.CDS.6CDS
Carg27205-RA.CDS.5Carg27205-RA.CDS.5CDS
Carg27205-RA.CDS.4Carg27205-RA.CDS.4CDS
Carg27205-RA.CDS.3Carg27205-RA.CDS.3CDS
Carg27205-RA.CDS.2Carg27205-RA.CDS.2CDS
Carg27205-RA.CDS.1Carg27205-RA.CDS.1CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg27205-RA.exon.6Carg27205-RA.exon.6exon
Carg27205-RA.exon.5Carg27205-RA.exon.5exon
Carg27205-RA.exon.4Carg27205-RA.exon.4exon
Carg27205-RA.exon.3Carg27205-RA.exon.3exon
Carg27205-RA.exon.2Carg27205-RA.exon.2exon
Carg27205-RA.exon.1Carg27205-RA.exon.1exon