Carg27205 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg27205
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Unknown protein
Location	Cucurbita_argyrosperma_scaffold_351 : 78715 .. 83750 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTTTAACCTTCAACGTCATAATTTCTCAGTTTTTTCGACATGGGTCTGCGGATTTCTCTTTTAAATGGAGTTCTATTCATACGTATGTCCGTTGCAGCACTTTGAGTGCATTTTCGCTTGTTCATAATGCGGTGTATGAAAAATAGATGCACGATTTTGTGGGGTAATCAAGTTGGTTATGTAGTGTTTTTGTGGGGAGTGCGATTATTGAAATGTATGCAAAAATTTGACTGATTAGTGATGCAGATGAAGTGTTTGATGAAATGCCCATGAGGAATACTGTGTGTGTGCAAATGCACTATTGACTAGATATGGCAAGGCTAGGATGTGGGTGCATGGACTTGAATTGAATGTATGCAAAAATTTAACTGATTAGTGATGCAGATGAAGTGTTTGATGAAATGCCCATGAGGAATATTGTGTGTACAAATGCACTATTGGCTAGATATGGCAAGGCTAGGATGTGGGTCCATGGACTTGAATTGCTATGGGAGATGCACGATTTGGATTCAGCTCTTTTACGTGCATGCGCTAGTTTATCTTGTTGAGGATTATTGAGAGGAGTAGTCCCATGTTGGCTAATTAAGAGGAAGATAATGAATTTATAACTAAGGAACACTATCTCCATTGGTACGAGGCCTTTCGGGGGGAACCAAAAGCAAAGCCACGAGAGCTTATACTCAAAGTGGATAATATCATACCATTGTGGAGAGTCGTGATTTCTAACACTACAATGACACTAGGTGAGCAAGTGCATGCTTATCTACTACGAACGGTTTATGATATTACCAGTGATGAGGATCTACAAAGAACATTAATTGAAATGTTTGGGAAGAGTGGCATAGTAGAAATAGCATGGCATGTATTCAATTTCGCAGGACTTGGACAAAAAGAAAAGGGATATTCTAGTATGGACTTCTATGTTTAGTGTATATGGTAGAAACGGATTGAACCGTACAACCAGATGTTGATGGAAGGGATCAAACCAGATAGTGTAGCTTTTGCGACAGTCATATCAGCTTCGTACACCATTTGTTCGACACTTGAGTCACTTTTGACTACACCTTCAAGACTTATAACTTCTTTATTCGACATTGGAGGATTCTATTGACATGGCTAAATTAAGGGCATAACTCTGATACCATGTTAGGAATCACAGATCTCCGTAATAGTATGATATCACTTCACTTTGAGCATAAGCTCTCATGGCTTTACTTTGGGCTTTCCCAAAAGGCCTCATATACCAATGAAGATGTATTCCTTACTTATAAACCCATGATCATTCCCTAAATTAGCCAATGTAAGACTCCCTTCCAACAATTCTCAATCGTAGGGCACTTGAATTGGATCCTTAGAATGCTCGGATATTCATTATGCTGGGTTTTAGCTTGTGGAATGAGATGCATTTGAGGCAATTTGTGAGAAAAGAATGGCTGTATAAAGCTGTTGGATAGTGTTGAATAGCGTTTATTCATATAACCTTTTGTAAAGTTAAACTGCTCAAGTAACCTATTTTTATGAGGAAATGGTTTCTCATGAGGTGCCATGATGAAAACGTTTCATTTAGCCTATGAGAGTTTTAGCTTGTATCACAGATATCAGTCTGACCTGTAAGGACTCTCAGCCACATGGATAGTTCAATCAGCTTGTGAATCATTCATATATACTTCTATGAACAAGAAACAAGAAACTAAGCCATTAATCTTGATGAGGTAGCTACATGTCATGATCTTTTCTTGCTTAGTTCTTTTCTATTACTCGAAAGCTCAGATTGTTGAACGTAGATGACAAAGTAAGGTTGATGATATCAAGTCCAGGTGTAGATAACGATGTTCAAGCACAGCTTTGTTAATTTCCTGACTTGCCTATCTTTTTCTTGGGACACTCGCTCTCTTTCCAAAGGATGATAGACATGCACATAGACACATATCAGCTACAATTTTAAGAAATCAGTACATGAATTAGAATGTCATCATTCAATGTTTTCAACTTTGTTTTGGCTGGAAGTATGCATGAGTTTACAATCCAGCGGTTGCTTCTTGGCATATATATTCTGACATGTATGTCGTGTACATCTCAGGGAGAGAAGCCTTCATGTAATGGCCCAAGCCTATCGCTAGCAGATATTGTCCTCTTTGGACTTTCCCTTTCGGGCTTCCCCTCAAGGTTTTTTAAAACTCGTTTGCTAGGGAGAGGTTTCCACACCCTTATAAAGGGTATTTTGTTCTCCTCCCCAACCGAGTTGGGATATCACAATCCACCCCCCTTTAAGGCCCAGTATCCCCACTGGCACTCGCTCCTTTCTCCGATCGATGTGGGATCCCTACCAAATCCACCCCCCTTCGAGGCTCAACATCCTTACTAGCACACCGCCTTGTGTCTACCCCTGTTCGGGGAACAACCTCTTCACTGACACATCGCGCCCGGTGTCTAGCTCTGATACCATTTGTAATAGTCCAAGCCCACCACTAGTAGATATTGTCCTCTTTGGGCTTTCCCTTTCGGGCTTCCCCTCAAGTTTTTTTAAAACTCATCTGCTAGGGATAGGTTTCCACACCCTTATAAAGGGTGTTTCGTTCTCCTCCCCAACCGATGTGGGATATCACAATTACTACCCCCTTCAGGTCCCAACGTTCCCACTGGCACTCGTTCCTTTCTCCAATCGATGCAGGGACCCCTGTCAAATCCACCCCCTTTCGGGGCCAGCGTTCTTACTGGCACACCGCCTTGTGTCTACCCCTCTTCGGGGAACAACCTCCTCGCTGGCACATCGCCCGATGTCTAGCTCTGATACCATTTGTAATGGTCCAAGCCCACCGCTAGTAGATATTGTCCTCTTTGGGCTTTCCCTTTCGAGCTTCCCCTTAAGATTTTTAAAACGCGCTTGCTAGGGAGAGGTTTCCACACCCTTATAAACGGTGTTTCGTTCTCCTCCCAAACCGACATGGGATATCACACTTCAACTGTTAGTACTTTTAACTGTCCATCTCTTTGTTAATAGTTGCAAAAACCTTTTATAGAGCTTCATTAAGATTATATCCCAAGAACTAGGAGTAACATTAACCATTATGTTTAATCATTCATTTTGTTTATGGTTTGAAATCTTGCAGTATGAGCTGCCAAGCTTTTCAAATGCAGGTATCTTCCAATGATCAACAAGGTTCTTTTCTAAACTAAGTTGAGTATGAATTCCACCTCTTTTTCCATTAGTTTAACCAATGTTGCATCGAAACACTAGTCGATGACAAAGTTGTTAGCACAAGGACCTTTGTGATTGATATCACTTGATCTTAACCCTCTAACTTCCACTGTAAAGGCCCCACCCCGTTGCTTTTTATCTTTTGCTTTCGCTGTTGCTACCTATTTGATCTGTGTTCTAATGCTCTCCCTATGCTATCTATCTGCAAGTGGAAGATTAAATAATGTTATCATGAATTGTGATTTGATCTTTCTTGTTTGGTTTGAACAGATTCAGAATCTTTACCATTTCTAAATTTAGGTGACTTTGTATGATCATCATAAAGAACTCATTAACTTCTAAAATGTTATTATGAATAAGATTTTCATTTTGCTGCTTGATAGTGAATTGTTCATTATTAGCTCTTTGCAAAATGATCTTGACAGATCAGGGCTGGACTACTAGTGTTCGGAACCGACGTTTTCGAGCGAAAATACTGGAAGGTTGTAATATTTGATCCCATCATTCTAATTCAAACAGTATTATTATGAAACTTGTCGTCAATTGTACTCTGTTTTCTCTGTAATTGATATGATTTCTTCCTTCTGAAACATATAGGCATCGCATATCAAAGGAAAATTTCAGGGCAAAGTTCATAGGATGTTGCAGAATACACATGATCAATCACAGACCTTTCTCCAGTACATGGCTTTTAATGGGGATGGGACCCTATGGCCCTTCTTTTGGTTTGGACCTGCATGTGCAGCCATGTTCATTGTGACGATTTCGTATCAATCTTGCTCTTGTTTCGCAAATTTTCTTACGAGGTACAACACGATCCTATCCTCGAGTTTTATATTAGCTCCATCAATTTCTTGATCGGTTGAAATGTTCAATTTCCATCCCGATCAATCATTGTTTCATTGTGCTTCTAATCCAGGTTTCTTATTGTAACGGCTCAAGCTCGCCGTTAGCAGATAGTGTCCTCTTTGGATTTTCTGTTTCGGGCTTCCCCTTAAGGTTTTTAGAACGCGTCTGCTAGGGAGAGGTTTCCACACCCTTATAAAAGGTGTTTCGTGTTTCGGGCTTCCCCTTAAGGTTTTTAGAACGCGTCTGCTAGAGAGAGGTTTCCACACCCTTATAAAAGGTGTTTCGTGTTTCGGGTTTCCCCTTGAGGTTTTTAGAACACGTCTGCTAAGGAGAGGATTTCACACCTTTATAAAAGGTGTTTTGTTCTCCTCCCAACCAATGTGGGGTCTCACAATCCATCCCTCTTCGGGGTCCAGCGTCCTCGCTGGCACTCGTTCCCTTCTCCAATCGATGTGGAACCCTACAATCCACCTTCCTTGGGGCCCAACGTCCTTGCTGGCACACCGCCTCATATCCACCCCCTTCGGGGCTCAGCTTTCTCACTAGCACATCGCCGATGTTTAGCTCTAATACCATTTGTAACGGCTCAAGCTCACCATTAGCAGATATTGTCCTTTTTGGGTTTTCCCTTTCAAGCTTCCCCTCAAGGTTCTTAAAACATATATGCTAGGAAGAGGTTTCCACACCCTTTATAAGGGTGTTCCGTTCTCCTCCCCAACCAATATGGTATCTCACACTTATACTCTACACCCTCGACGTCTTTCAACCATATGAAATGTATGCATATTGTGGTTTGAGTTGCTGCAGATTACACCCAAACTCCCAACCAGAAAACTAATGTGGCGGCCTGCTGCAGGCTACATCTTCAGCATGCCTATCAAACCGGTCATCTCGACGACGACATCCCACATGAGGCTAACCTCTGCTAGCCAGACTGCCAGAATTGAAATGCTTGTTTCTCGGTTCGTGCAGCAGCTGGCGATCGAG

mRNA sequence

TCTTTAACCTTCAACTTTTTTCGACATGGGTCTGCGGATTTCTCTTTTAAATGGAGTTCTATTCATACGTATGTCCGTTGCAGCACTTTGAGTGCATTTTCGCTTGTTCATAATGCGGAATACTGTGTGTGTGCAAATGCACTATTGACTAGATATGGCAAGGCTAGGATGTGGGTGCATGGACTTGAATTGAATAGTGGCATAGTAGAAATAGCATGGCATGTATTCAATTTCGCAGGACTTGGACAAAAAGAAAAGGGATATTCTAGTATGGACTTCTATTATGAGCTGCCAAGCTTTTCAAATGCAGGCTACATCTTCAGCATGCCTATCAAACCGGTCATCTCGACGACGACATCCCACATGAGGCTAACCTCTGCTAGCCAGACTGCCAGAATTGAAATGCTTGTTTCTCGGTTCGTGCAGCAGCTGGCGATCGAG

Coding sequence (CDS)

TCTTTAACCTTCAACTTTTTTCGACATGGGTCTGCGGATTTCTCTTTTAAATGGAGTTCTATTCATACGTATGTCCGTTGCAGCACTTTGAGTGCATTTTCGCTTGTTCATAATGCGGAATACTGTGTGTGTGCAAATGCACTATTGACTAGATATGGCAAGGCTAGGATGTGGGTGCATGGACTTGAATTGAATAGTGGCATAGTAGAAATAGCATGGCATGTATTCAATTTCGCAGGACTTGGACAAAAAGAAAAGGGATATTCTAGTATGGACTTCTATTATGAGCTGCCAAGCTTTTCAAATGCAGGCTACATCTTCAGCATGCCTATCAAACCGGTCATCTCGACGACGACATCCCACATGAGGCTAACCTCTGCTAGCCAGACTGCCAGAATTGAAATGCTTGTTTCTCGGTTCGTGCAGCAGCTGGCGATCGAG

Protein sequence

SLTFNFFRHGSADFSFKWSSIHTYVRCSTLSAFSLVHNAEYCVCANALLTRYGKARMWVHGLELNSGIVEIAWHVFNFAGLGQKEKGYSSMDFYYELPSFSNAGYIFSMPIKPVISTTTSHMRLTSASQTARIEMLVSRFVQQLAIE

Homology

[Close]

BLAST of Carg27205 vs. NCBI nr
Match: XP_022146156.1 (pentatricopeptide repeat-containing protein At4g21300-like [Momordica charantia])

HSP 1 Score: 53.5 bits (127), Expect = 6.9e-04
Identity = 61/208 (29.33%), Postives = 69/208 (33.17%), Query Frame = 0


Query: 1   SLTFN-----FFRHGSAD-----FSFKWSS---IHTYVRCSTLSAFSLVHNAEY------ 60
           SLTFN     F R+GSAD     FSF  S+   I +Y  CSTLSA SLV N  +      
Sbjct: 83  SLTFNIIIADFCRNGSADFALMAFSFMHSNGVPIDSYALCSTLSACSLVQNVMFGKQMHA 142

Query: 61  -----------------------------------------CVCANALLTRYGKARMWVH 88
                                                     VCANALL  YG+A+MWV 
Sbjct: 143 FVGKSGWLSSVFVGSAIVDLYAKNGLIGDAVEVFDEIPMKNTVCANALLAGYGEAKMWVE 202

The following BLAST results are available for this feature:

BLAST of Carg27205 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022146156.1	6.9e-04	29.33	pentatricopeptide repeat-containing protein At4g21300-like [Momordica charantia]	[more]

BLAST of Carg27205 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg27205 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg27205 vs. TrEMBL


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg27205-RA	Carg27205-RA	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg27205	Lsi10G004290	Bottle gourd (USVL1VR-Ls)	carlsiB753

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg27205	Silver-seed gourd	carcarB443
Carg27205	Cucumber (Gy14) v2	carcgybB0813
Carg27205	Cucurbita maxima (Rimu)	carcmaB1144
Carg27205	Cucurbita maxima (Rimu)	carcmaB1145
Carg27205	Cucurbita moschata (Rifu)	carcmoB1114
Carg27205	Cucurbita moschata (Rifu)	carcmoB1115
Carg27205	Cucurbita pepo (Zucchini)	carcpeB1155
Carg27205	Cucurbita pepo (Zucchini)	carcpeB1156
Carg27205	Wild cucumber (PI 183967)	carcpiB0860
Carg27205	Cucumber (Chinese Long) v2	carcuB0838
Carg27205	Cucumber (Chinese Long) v3	carcucB0863
Carg27205	Watermelon (Charleston Gray)	carwcgB0797
Carg27205	Watermelon (97103) v1	carwmB0822
Carg27205	Watermelon (97103) v2	carwmbB0857
Carg27205	Wax gourd	carwgoB0961