Carg27154-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg27154-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Beta-adaptin-like protein
Location	Cucurbita_argyrosperma_scaffold_474 : 38208 .. 39274 (+)
Sequence length	521

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTGGAAAGGCAGATTTGCATGAACAGCAATGTAACAATGTTGAATTGGCATTTAACTGGATATTTGATAGAAACTCGGTTGTTGTAACTTCAGAGTCTACGAGTTCCTTCGGGATCTTCATTTTAATTGTTGAGATCAAAAGATGAAGAGATTTTATTTTTCATGAATTATTTCTTAGATGGGGATCAGACAATCGACTTTTGAAATCGTAAATTTAATGTCAATCGAGTATATGTATCAACCAGATTATCACGTTGAGACCTACCAGTGCATGTTAGGTTGTGTTGAGTCAAATCAGCTCTATTTTTGGTCTCTGATCAATACCAATTTAGCTGCTTGATCAAGCGTAGATGCTTATAACTCACTGTATCTGTAGATGCTTATAACTCACTGTATCTGTAGATGCTTATATAGTGTACCTTAAGGAGCTGCTGGATCAAGCGTAGATGCTTATACTATAGTGTACCTTTGCTAGAATAAGGATTAAAGTAGATGATTCAGCTCATTATCTCTACTAGCATGATTTCAATTGCTAAATCTTTTGCAGGCTCTTTTGAATAATGCTACTGTGGAGACGGATGATCCTGATTTGCGTTATCGTGCGTATATCTATTGGCGTCTCCTATCGACTGATCCAGAGGTTGTGTTCCAAAACATGTCTCAAGGTCCTCCAAGCTCACTTTTGCAGGTAGCTGTGAAGAACAATCAACATCCAGTGTGGTATTTCAATGATAAAATTTCTATGCACATTTTCTTTGCCGAGGATGGGACGATGGAGCGTACAAACTTTCTCGAGGTAAAAAATGATATAGAAATAGTAGAATGCACACTTCAACTGTTCATCTTCTCTGTGGCATTAACTATCTTTTTCATTTCAGACTTGGAGGTCCCTTCCAGATTCGAATGAAGTTTCTAGAGATTTTTCGACCATTCTTATAAACAATGTTGACGCCATTGTCGACTGACTGGCTGCAACGAACATGTTCTTGATTGTCAAAACAAAGCATGCGAACCAGGATGTTTTCTACTTCTCTACAAAATTCCTCAGAGGAATCCCTTTGTT

mRNA sequence

ATGCTTGGAAAGGCAGATTTGCATGAACAGCAATGTAACAATGTTGAATTGGCATTTAACTGGATATTTGATAGAAACTCGGTTGTTGCTCTTTTGAATAATGCTACTGTGGAGACGGATGATCCTGATTTGCGTTATCGTGCGTATATCTATTGGCGTCTCCTATCGACTGATCCAGAGGTTGTGTTCCAAAACATGTCTCAAGGTCCTCCAAGCTCACTTTTGCAGGTAGCTGTGAAGAACAATCAACATCCAGTGTGGTATTTCAATGATAAAATTTCTATGCACATTTTCTTTGCCGAGGATGGGACGATGGAGCGTACAAACTTTCTCGAGACTTGGAGGTCCCTTCCAGATTCGAATGAAGTTTCTAGAGATTTTTCGACCATTCTTATAAACAATGTTGACGCCATTGTCGACTGACTGGCTGCAACGAACATGTTCTTGATTGTCAAAACAAAGCATGCGAACCAGGATGTTTTCTACTTCTCTACAAAATTCCTCAGAGGAATCCCTTTGTT

Coding sequence (CDS)

ATGCTTGGAAAGGCAGATTTGCATGAACAGCAATGTAACAATGTTGAATTGGCATTTAACTGGATATTTGATAGAAACTCGGTTGTTGCTCTTTTGAATAATGCTACTGTGGAGACGGATGATCCTGATTTGCGTTATCGTGCGTATATCTATTGGCGTCTCCTATCGACTGATCCAGAGGTTGTGTTCCAAAACATGTCTCAAGGTCCTCCAAGCTCACTTTTGCAGGTAGCTGTGAAGAACAATCAACATCCAGTGTGGTATTTCAATGATAAAATTTCTATGCACATTTTCTTTGCCGAGGATGGGACGATGGAGCGTACAAACTTTCTCGAGACTTGGAGGTCCCTTCCAGATTCGAATGAAGTTTCTAGAGATTTTTCGACCATTCTTATAAACAATGTTGACGCCATTGTCGACTGA

Protein sequence

MLGKADLHEQQCNNVELAFNWIFDRNSVVALLNNATVETDDPDLRYRAYIYWRLLSTDPEVVFQNMSQGPPSSLLQVAVKNNQHPVWYFNDKISMHIFFAEDGTMERTNFLETWRSLPDSNEVSRDFSTILINNVDAIVD

Homology

[Close]

BLAST of Carg27154-RA vs. NCBI nr
Match: XP_022157680.1 (beta-adaptin-like protein B [Momordica charantia])

HSP 1 Score: 148.3 bits (373), Expect = 2.0e-32
Identity = 66/82 (80.49%), Postives = 75/82 (91.46%), Query Frame = 0


Query: 59  PEVVFQNMSQGPPSSLLQVAVKNNQHPVWYFNDKISMHIFFAEDGTMERTNFLETWRSLP 118
           P VVFQNMSQGPPSSLLQVAVKNNQ PVWYFNDKISMH+FF EDG MER NFLETWRSLP
Sbjct: 752 PMVVFQNMSQGPPSSLLQVAVKNNQQPVWYFNDKISMHVFFTEDGRMERANFLETWRSLP 811

Query: 119 DSNEVSRDFSTILINNVDAIVD 141
           DSNEVS+DF  I++NN+++++D
Sbjct: 812 DSNEVSKDFPAIVLNNIESVLD 833

HSP 2 Score: 63.2 bits (152), Expect = 8.3e-07
Identity = 28/33 (84.85%), Postives = 31/33 (93.94%), Query Frame = 0


Query: 28  VVALLNNATVETDDPDLRYRAYIYWRLLSTDPE 61
           + A+LNNATVETD+PDLR RAYIYWRLLSTDPE
Sbjct: 504 IQAVLNNATVETDNPDLRDRAYIYWRLLSTDPE 536

[Close]

BLAST of Carg27154-RA vs. NCBI nr
Match: XP_022958571.1 (beta-adaptin-like protein C [Cucurbita moschata])

HSP 1 Score: 143.7 bits (361), Expect = 4.8e-31
Identity = 65/82 (79.27%), Postives = 73/82 (89.02%), Query Frame = 0


Query: 59  PEVVFQNMSQGPPSSLLQVAVKNNQHPVWYFNDKISMHIFFAEDGTMERTNFLETWRSLP 118
           P VVFQN+SQGPPSSLLQVAVKNNQ PVWYFNDKISMHIFF +DG MER NFLETWRSLP
Sbjct: 751 PMVVFQNLSQGPPSSLLQVAVKNNQQPVWYFNDKISMHIFFTDDGRMERANFLETWRSLP 810

Query: 119 DSNEVSRDFSTILINNVDAIVD 141
           DSNEVS+DF  + I NV+A+++
Sbjct: 811 DSNEVSKDFPALFITNVEAVLE 832

HSP 2 Score: 63.2 bits (152), Expect = 8.3e-07
Identity = 28/33 (84.85%), Postives = 31/33 (93.94%), Query Frame = 0


Query: 28  VVALLNNATVETDDPDLRYRAYIYWRLLSTDPE 61
           + A+LNNATVETD+PDLR RAYIYWRLLSTDPE
Sbjct: 504 IQAVLNNATVETDNPDLRDRAYIYWRLLSTDPE 536

[Close]

BLAST of Carg27154-RA vs. NCBI nr
Match: XP_022969976.1 (beta-adaptin-like protein B isoform X1 [Cucurbita maxima])

HSP 1 Score: 143.7 bits (361), Expect = 4.8e-31
Identity = 64/82 (78.05%), Postives = 74/82 (90.24%), Query Frame = 0


Query: 59  PEVVFQNMSQGPPSSLLQVAVKNNQHPVWYFNDKISMHIFFAEDGTMERTNFLETWRSLP 118
           P VVFQNMSQGPPSSLLQVAVKNNQ PVWYFNDKISMH+FF +DG MER NFLETWRSLP
Sbjct: 748 PMVVFQNMSQGPPSSLLQVAVKNNQQPVWYFNDKISMHVFFTDDGRMERANFLETWRSLP 807

Query: 119 DSNEVSRDFSTILINNVDAIVD 141
           DSNEVS+DF  I++ N++A+++
Sbjct: 808 DSNEVSKDFPAIVLTNMEAVLE 829

HSP 2 Score: 61.6 bits (148), Expect = 2.4e-06
Identity = 27/33 (81.82%), Postives = 30/33 (90.91%), Query Frame = 0


Query: 28  VVALLNNATVETDDPDLRYRAYIYWRLLSTDPE 61
           +  +LNNATVETD+PDLR RAYIYWRLLSTDPE
Sbjct: 504 IQVVLNNATVETDNPDLRDRAYIYWRLLSTDPE 536

[Close]

BLAST of Carg27154-RA vs. NCBI nr
Match: XP_022969978.1 (beta-adaptin-like protein B isoform X3 [Cucurbita maxima])

HSP 1 Score: 143.7 bits (361), Expect = 4.8e-31
Identity = 64/82 (78.05%), Postives = 74/82 (90.24%), Query Frame = 0


Query: 59  PEVVFQNMSQGPPSSLLQVAVKNNQHPVWYFNDKISMHIFFAEDGTMERTNFLETWRSLP 118
           P VVFQNMSQGPPSSLLQVAVKNNQ PVWYFNDKISMH+FF +DG MER NFLETWRSLP
Sbjct: 706 PMVVFQNMSQGPPSSLLQVAVKNNQQPVWYFNDKISMHVFFTDDGRMERANFLETWRSLP 765

Query: 119 DSNEVSRDFSTILINNVDAIVD 141
           DSNEVS+DF  I++ N++A+++
Sbjct: 766 DSNEVSKDFPAIVLTNMEAVLE 787

HSP 2 Score: 61.6 bits (148), Expect = 2.4e-06
Identity = 27/33 (81.82%), Postives = 30/33 (90.91%), Query Frame = 0


Query: 28  VVALLNNATVETDDPDLRYRAYIYWRLLSTDPE 61
           +  +LNNATVETD+PDLR RAYIYWRLLSTDPE
Sbjct: 462 IQVVLNNATVETDNPDLRDRAYIYWRLLSTDPE 494

[Close]

BLAST of Carg27154-RA vs. NCBI nr
Match: XP_022969977.1 (beta-adaptin-like protein B isoform X2 [Cucurbita maxima])

HSP 1 Score: 143.7 bits (361), Expect = 4.8e-31
Identity = 64/82 (78.05%), Postives = 74/82 (90.24%), Query Frame = 0


Query: 59  PEVVFQNMSQGPPSSLLQVAVKNNQHPVWYFNDKISMHIFFAEDGTMERTNFLETWRSLP 118
           P VVFQNMSQGPPSSLLQVAVKNNQ PVWYFNDKISMH+FF +DG MER NFLETWRSLP
Sbjct: 730 PMVVFQNMSQGPPSSLLQVAVKNNQQPVWYFNDKISMHVFFTDDGRMERANFLETWRSLP 789

Query: 119 DSNEVSRDFSTILINNVDAIVD 141
           DSNEVS+DF  I++ N++A+++
Sbjct: 790 DSNEVSKDFPAIVLTNMEAVLE 811

HSP 2 Score: 61.6 bits (148), Expect = 2.4e-06
Identity = 27/33 (81.82%), Postives = 30/33 (90.91%), Query Frame = 0


Query: 28  VVALLNNATVETDDPDLRYRAYIYWRLLSTDPE 61
           +  +LNNATVETD+PDLR RAYIYWRLLSTDPE
Sbjct: 486 IQVVLNNATVETDNPDLRDRAYIYWRLLSTDPE 518

[Close]

BLAST of Carg27154-RA vs. TAIR10
Match: AT4G11380.2 (Adaptin family protein)

HSP 1 Score: 121.3 bits (303), Expect = 4.7e-28
Identity = 56/82 (68.29%), Postives = 65/82 (79.27%), Query Frame = 0


Query: 59  PEVVFQNMSQGPPSSLLQVAVKNNQHPVWYFNDKISMHIFFAEDGTMERTNFLETWRSLP 118
           P V+FQNMS GPPSSLLQVAVKNNQ PVWYF DKI +H  F EDG MER  FLETWRSLP
Sbjct: 764 PMVLFQNMSAGPPSSLLQVAVKNNQQPVWYFTDKIILHALFGEDGRMERGTFLETWRSLP 823

Query: 119 DSNEVSRDFSTILINNVDAIVD 141
           DSNEV ++F  I I +V++ ++
Sbjct: 824 DSNEVLKEFPGITITSVESTIE 845

HSP 2 Score: 61.6 bits (148), Expect = 4.4e-10
Identity = 27/33 (81.82%), Postives = 30/33 (90.91%), Query Frame = 0


Query: 28  VVALLNNATVETDDPDLRYRAYIYWRLLSTDPE 61
           +  +LNNATVETD+PDLR RAYIYWRLLSTDPE
Sbjct: 526 IQVVLNNATVETDNPDLRDRAYIYWRLLSTDPE 558

[Close]

BLAST of Carg27154-RA vs. TAIR10
Match: AT4G23460.1 (Adaptin family protein)

HSP 1 Score: 109.0 bits (271), Expect = 2.4e-24
Identity = 51/82 (62.20%), Postives = 63/82 (76.83%), Query Frame = 0


Query: 59  PEVVFQNMSQGPPSSLLQVAVKNNQHPVWYFNDKISMHIFFAEDGTMERTNFLETWRSLP 118
           P V+ QNMS G  SS+LQVAVKNNQ PVWYF DKI ++  F+EDG MER  FLETW+SLP
Sbjct: 741 PMVLSQNMSTGSTSSVLQVAVKNNQQPVWYFEDKIVLNALFSEDGRMERGTFLETWKSLP 800

Query: 119 DSNEVSRDFSTILINNVDAIVD 141
           DSNEV ++F  I I +V++ +D
Sbjct: 801 DSNEVQKEFPGITITSVESTLD 822

HSP 2 Score: 61.6 bits (148), Expect = 4.4e-10
Identity = 27/33 (81.82%), Postives = 30/33 (90.91%), Query Frame = 0


Query: 28  VVALLNNATVETDDPDLRYRAYIYWRLLSTDPE 61
           +  +LNNATVETD+PDLR RAYIYWRLLSTDPE
Sbjct: 504 IQVVLNNATVETDNPDLRDRAYIYWRLLSTDPE 536

[Close]

BLAST of Carg27154-RA vs. Swiss-Prot
Match: sp|Q9SUS3|APBLB_ARATH (Beta-adaptin-like protein B OS=Arabidopsis thaliana OX=3702 GN=BETAB-AD PE=1 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 8.4e-27
Identity = 56/82 (68.29%), Postives = 65/82 (79.27%), Query Frame = 0


Query: 59  PEVVFQNMSQGPPSSLLQVAVKNNQHPVWYFNDKISMHIFFAEDGTMERTNFLETWRSLP 118
           P V+FQNMS GPPSSLLQVAVKNNQ PVWYF DKI +H  F EDG MER  FLETWRSLP
Sbjct: 742 PMVLFQNMSAGPPSSLLQVAVKNNQQPVWYFTDKIILHALFGEDGRMERGTFLETWRSLP 801

Query: 119 DSNEVSRDFSTILINNVDAIVD 141
           DSNEV ++F  I I +V++ ++
Sbjct: 802 DSNEVLKEFPGITITSVESTIE 823

HSP 2 Score: 61.6 bits (148), Expect = 7.9e-09
Identity = 27/33 (81.82%), Postives = 30/33 (90.91%), Query Frame = 0


Query: 28  VVALLNNATVETDDPDLRYRAYIYWRLLSTDPE 61
           +  +LNNATVETD+PDLR RAYIYWRLLSTDPE
Sbjct: 504 IQVVLNNATVETDNPDLRDRAYIYWRLLSTDPE 536

[Close]

BLAST of Carg27154-RA vs. Swiss-Prot
Match: sp|O81742|APBLC_ARATH (Beta-adaptin-like protein C OS=Arabidopsis thaliana OX=3702 GN=BETAC-AD PE=1 SV=2)

HSP 1 Score: 109.0 bits (271), Expect = 4.3e-23
Identity = 51/82 (62.20%), Postives = 63/82 (76.83%), Query Frame = 0


Query: 59  PEVVFQNMSQGPPSSLLQVAVKNNQHPVWYFNDKISMHIFFAEDGTMERTNFLETWRSLP 118
           P V+ QNMS G  SS+LQVAVKNNQ PVWYF DKI ++  F+EDG MER  FLETW+SLP
Sbjct: 741 PMVLSQNMSTGSTSSVLQVAVKNNQQPVWYFEDKIVLNALFSEDGRMERGTFLETWKSLP 800

Query: 119 DSNEVSRDFSTILINNVDAIVD 141
           DSNEV ++F  I I +V++ +D
Sbjct: 801 DSNEVQKEFPGITITSVESTLD 822

HSP 2 Score: 61.6 bits (148), Expect = 7.9e-09
Identity = 27/33 (81.82%), Postives = 30/33 (90.91%), Query Frame = 0


Query: 28  VVALLNNATVETDDPDLRYRAYIYWRLLSTDPE 61
           +  +LNNATVETD+PDLR RAYIYWRLLSTDPE
Sbjct: 504 IQVVLNNATVETDNPDLRDRAYIYWRLLSTDPE 536

[Close]

BLAST of Carg27154-RA vs. Swiss-Prot
Match: sp|Q10567|AP1B1_HUMAN (AP-1 complex subunit beta-1 OS=Homo sapiens OX=9606 GN=AP1B1 PE=1 SV=2)

HSP 1 Score: 56.2 bits (134), Expect = 3.3e-07
Identity = 27/52 (51.92%), Postives = 35/52 (67.31%), Query Frame = 0


Query: 71  PSSLLQVAVKNNQHPVWYFNDKISMHIFFAEDGTMERTNFLETWRSLPDSNE 123
           P + LQVAVKNN   V+YF+    +HI F EDG M+R  FL TW+ +P+ NE
Sbjct: 808 PLNNLQVAVKNN-IDVFYFSTLYPLHILFVEDGKMDRQMFLATWKDIPNENE 858

HSP 2 Score: 47.8 bits (112), Expect = 1.2e-04
Identity = 21/32 (65.62%), Postives = 26/32 (81.25%), Query Frame = 0


Query: 28  VVALLNNATVETDDPDLRYRAYIYWRLLSTDP 60
           V  +L+ AT ++D+PDLR R YIYWRLLSTDP
Sbjct: 503 VQQVLSLATQDSDNPDLRDRGYIYWRLLSTDP 534

[Close]

BLAST of Carg27154-RA vs. Swiss-Prot
Match: sp|P52303|AP1B1_RAT (AP-1 complex subunit beta-1 OS=Rattus norvegicus OX=10116 GN=Ap1b1 PE=1 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 4.3e-07
Identity = 26/52 (50.00%), Postives = 35/52 (67.31%), Query Frame = 0


Query: 71  PSSLLQVAVKNNQHPVWYFNDKISMHIFFAEDGTMERTNFLETWRSLPDSNE 123
           P + LQVAVKNN   V+YF+    +H+ F EDG M+R  FL TW+ +P+ NE
Sbjct: 811 PLNNLQVAVKNN-IDVFYFSTLYPLHVLFVEDGKMDRQMFLATWKDIPNENE 861

HSP 2 Score: 47.8 bits (112), Expect = 1.2e-04
Identity = 21/32 (65.62%), Postives = 26/32 (81.25%), Query Frame = 0


Query: 28  VVALLNNATVETDDPDLRYRAYIYWRLLSTDP 60
           V  +L+ AT ++D+PDLR R YIYWRLLSTDP
Sbjct: 503 VQQVLSLATQDSDNPDLRDRGYIYWRLLSTDP 534

[Close]

BLAST of Carg27154-RA vs. Swiss-Prot
Match: sp|Q08DS7|AP1B1_BOVIN (AP-1 complex subunit beta-1 OS=Bos taurus OX=9913 GN=AP2B1 PE=2 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 5.7e-07
Identity = 27/53 (50.94%), Postives = 37/53 (69.81%), Query Frame = 0


Query: 71  PSSLLQVAVKNNQHPVWYFNDKISMHIFFAEDGTMERTNFLETWRSLPDSNEV 124
           P + LQVAVKNN   V+YF+  I +++ F EDG MER  FL TW+ +P+ NE+
Sbjct: 813 PLNNLQVAVKNN-IDVFYFSCLIPLNVLFVEDGKMERQVFLATWKDIPNENEL 864

HSP 2 Score: 47.8 bits (112), Expect = 1.2e-04
Identity = 21/32 (65.62%), Postives = 26/32 (81.25%), Query Frame = 0


Query: 28  VVALLNNATVETDDPDLRYRAYIYWRLLSTDP 60
           V  +L+ AT ++D+PDLR R YIYWRLLSTDP
Sbjct: 503 VQQVLSLATQDSDNPDLRDRGYIYWRLLSTDP 534

[Close]

BLAST of Carg27154-RA vs. TrEMBL
Match: tr|M5WE51|M5WE51_PRUPE (Beta-adaptin-like protein OS=Prunus persica OX=3760 GN=PRUPE_5G103900 PE=3 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 5.5e-31
Identity = 64/82 (78.05%), Postives = 73/82 (89.02%), Query Frame = 0


Query: 59  PEVVFQNMSQGPPSSLLQVAVKNNQHPVWYFNDKISMHIFFAEDGTMERTNFLETWRSLP 118
           P V FQNMSQGPPSSLLQVAVKNNQ PVWYFNDKIS+H+FF EDG MER NFLETWRSLP
Sbjct: 751 PMVTFQNMSQGPPSSLLQVAVKNNQQPVWYFNDKISLHVFFTEDGRMERANFLETWRSLP 810

Query: 119 DSNEVSRDFSTILINNVDAIVD 141
           DSNE++RDF  I+++NV+A +D
Sbjct: 811 DSNEITRDFPGIVVSNVEATLD 832

HSP 2 Score: 61.6 bits (148), Expect = 1.6e-06
Identity = 27/33 (81.82%), Postives = 30/33 (90.91%), Query Frame = 0


Query: 28  VVALLNNATVETDDPDLRYRAYIYWRLLSTDPE 61
           +  +LNNATVETD+PDLR RAYIYWRLLSTDPE
Sbjct: 504 IQVVLNNATVETDNPDLRDRAYIYWRLLSTDPE 536

[Close]

BLAST of Carg27154-RA vs. TrEMBL
Match: tr|A0A1S3C1P5|A0A1S3C1P5_CUCME (Beta-adaptin-like protein OS=Cucumis melo OX=3656 GN=LOC103495623 PE=3 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 2.1e-30
Identity = 68/80 (85.00%), Postives = 72/80 (90.00%), Query Frame = 0


Query: 61  VVFQNMSQGPPSSLLQVAVKNNQHPVWYFNDKISMHIFFAEDGTMERTNFLETWRSLPDS 120
           VVFQNMSQGPPSSLLQVAVKNNQ PV YFNDKI MHIFF EDG MER +FLETWRSLPDS
Sbjct: 755 VVFQNMSQGPPSSLLQVAVKNNQQPVLYFNDKIPMHIFFTEDGRMERASFLETWRSLPDS 814

Query: 121 NEVSRDFSTILINNVDAIVD 141
           NEV RDF TILINNV+AI++
Sbjct: 815 NEVIRDFPTILINNVEAILE 834

HSP 2 Score: 63.2 bits (152), Expect = 5.5e-07
Identity = 28/33 (84.85%), Postives = 31/33 (93.94%), Query Frame = 0


Query: 28  VVALLNNATVETDDPDLRYRAYIYWRLLSTDPE 61
           + A+LNNATVETD+PDLR RAYIYWRLLSTDPE
Sbjct: 504 IQAVLNNATVETDNPDLRDRAYIYWRLLSTDPE 536

[Close]

BLAST of Carg27154-RA vs. TrEMBL
Match: tr|A0A2N9FW79|A0A2N9FW79_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS19093 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 3.5e-30
Identity = 62/82 (75.61%), Postives = 74/82 (90.24%), Query Frame = 0


Query: 59  PEVVFQNMSQGPPSSLLQVAVKNNQHPVWYFNDKISMHIFFAEDGTMERTNFLETWRSLP 118
           P V+FQN+SQGPPSSLLQVAVKN+Q PVWYFNDK+ +H+FF EDG MERTNFLETWRSLP
Sbjct: 320 PMVMFQNLSQGPPSSLLQVAVKNSQQPVWYFNDKVLLHVFFTEDGRMERTNFLETWRSLP 379

Query: 119 DSNEVSRDFSTILINNVDAIVD 141
           DSNEVS+DF  I++N+V+A +D
Sbjct: 380 DSNEVSKDFPDIVVNSVEATLD 401

HSP 2 Score: 62.0 bits (149), Expect = 1.2e-06
Identity = 28/37 (75.68%), Postives = 30/37 (81.08%), Query Frame = 0


Query: 24  DRNSVVALLNNATVETDDPDLRYRAYIYWRLLSTDPE 61
           D      +LNNATVETD+PDLR RAYIYWRLLSTDPE
Sbjct: 105 DEPEAKVVLNNATVETDNPDLRDRAYIYWRLLSTDPE 141

[Close]

BLAST of Carg27154-RA vs. TrEMBL
Match: tr|A0A1S3ATD0|A0A1S3ATD0_CUCME (Beta-adaptin-like protein OS=Cucumis melo OX=3656 GN=LOC103482767 PE=3 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 3.5e-30
Identity = 64/82 (78.05%), Postives = 72/82 (87.80%), Query Frame = 0


Query: 59  PEVVFQNMSQGPPSSLLQVAVKNNQHPVWYFNDKISMHIFFAEDGTMERTNFLETWRSLP 118
           P VVFQNMSQGPPSSLLQVAVKNNQ  VWYFNDKI MHIFF +DG MER NFLETWRSLP
Sbjct: 748 PMVVFQNMSQGPPSSLLQVAVKNNQQQVWYFNDKIPMHIFFTDDGRMERANFLETWRSLP 807

Query: 119 DSNEVSRDFSTILINNVDAIVD 141
           DSNEVS+DF  I++ NV+A+++
Sbjct: 808 DSNEVSKDFPAIVLTNVEAVLE 829

HSP 2 Score: 61.2 bits (147), Expect = 2.1e-06
Identity = 27/33 (81.82%), Postives = 31/33 (93.94%), Query Frame = 0


Query: 28  VVALLNNATVETDDPDLRYRAYIYWRLLSTDPE 61
           + A+L+NATVETD+PDLR RAYIYWRLLSTDPE
Sbjct: 504 IQAVLDNATVETDNPDLRDRAYIYWRLLSTDPE 536

[Close]

BLAST of Carg27154-RA vs. TrEMBL
Match: tr|A0A2P6P6R9|A0A2P6P6R9_ROSCH (Beta-adaptin-like protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr7g0197091 PE=3 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 6.0e-30
Identity = 62/82 (75.61%), Postives = 71/82 (86.59%), Query Frame = 0


Query: 59  PEVVFQNMSQGPPSSLLQVAVKNNQHPVWYFNDKISMHIFFAEDGTMERTNFLETWRSLP 118
           P V FQNMSQGPPSSLLQVAVKNNQ PVWYFNDKI +H+FF EDG MER NFLETWRSLP
Sbjct: 749 PMVTFQNMSQGPPSSLLQVAVKNNQQPVWYFNDKIPLHVFFTEDGRMERANFLETWRSLP 808

Query: 119 DSNEVSRDFSTILINNVDAIVD 141
           DSNE+++DF  I++ NV+A +D
Sbjct: 809 DSNEITKDFPGIVVGNVEATLD 830

HSP 2 Score: 61.6 bits (148), Expect = 1.6e-06
Identity = 27/33 (81.82%), Postives = 30/33 (90.91%), Query Frame = 0


Query: 28  VVALLNNATVETDDPDLRYRAYIYWRLLSTDPE 61
           +  +LNNATVETD+PDLR RAYIYWRLLSTDPE
Sbjct: 504 IQVVLNNATVETDNPDLRDRAYIYWRLLSTDPE 536

The following BLAST results are available for this feature:

BLAST of Carg27154-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022157680.1	2.0e-32	80.49	beta-adaptin-like protein B [Momordica charantia]	[more]
XP_022958571.1	4.8e-31	79.27	beta-adaptin-like protein C [Cucurbita moschata]	[more]
XP_022969976.1	4.8e-31	78.05	beta-adaptin-like protein B isoform X1 [Cucurbita maxima]	[more]
XP_022969978.1	4.8e-31	78.05	beta-adaptin-like protein B isoform X3 [Cucurbita maxima]	[more]
XP_022969977.1	4.8e-31	78.05	beta-adaptin-like protein B isoform X2 [Cucurbita maxima]	[more]

BLAST of Carg27154-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT4G11380.2	4.7e-28	68.29	Adaptin family protein	[more]
AT4G23460.1	2.4e-24	62.20	Adaptin family protein	[more]

BLAST of Carg27154-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9SUS3\|APBLB_ARATH	8.4e-27	68.29	Beta-adaptin-like protein B OS=Arabidopsis thaliana OX=3702 GN=BETAB-AD PE=1 SV=...	[more]
sp\|O81742\|APBLC_ARATH	4.3e-23	62.20	Beta-adaptin-like protein C OS=Arabidopsis thaliana OX=3702 GN=BETAC-AD PE=1 SV=...	[more]
sp\|Q10567\|AP1B1_HUMAN	3.3e-07	51.92	AP-1 complex subunit beta-1 OS=Homo sapiens OX=9606 GN=AP1B1 PE=1 SV=2	[more]
sp\|P52303\|AP1B1_RAT	4.3e-07	50.00	AP-1 complex subunit beta-1 OS=Rattus norvegicus OX=10116 GN=Ap1b1 PE=1 SV=1	[more]
sp\|Q08DS7\|AP1B1_BOVIN	5.7e-07	50.94	AP-1 complex subunit beta-1 OS=Bos taurus OX=9913 GN=AP2B1 PE=2 SV=1	[more]

BLAST of Carg27154-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|M5WE51\|M5WE51_PRUPE	5.5e-31	78.05	Beta-adaptin-like protein OS=Prunus persica OX=3760 GN=PRUPE_5G103900 PE=3 SV=1	[more]
tr\|A0A1S3C1P5\|A0A1S3C1P5_CUCME	2.1e-30	85.00	Beta-adaptin-like protein OS=Cucumis melo OX=3656 GN=LOC103495623 PE=3 SV=1	[more]
tr\|A0A2N9FW79\|A0A2N9FW79_FAGSY	3.5e-30	75.61	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS19093 PE=4 SV=1	[more]
tr\|A0A1S3ATD0\|A0A1S3ATD0_CUCME	3.5e-30	78.05	Beta-adaptin-like protein OS=Cucumis melo OX=3656 GN=LOC103482767 PE=3 SV=1	[more]
tr\|A0A2P6P6R9\|A0A2P6P6R9_ROSCH	6.0e-30	75.61	Beta-adaptin-like protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr7g0197091 PE...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Cellular Component**
Term	Definition
GO:0030117	membrane coat
GO:0030131	clathrin adaptor complex

Vocabulary: **Biological Process**
Term	Definition
GO:0006886	intracellular protein transport
GO:0016192	vesicle-mediated transport

Vocabulary: **INTERPRO**
Term	Definition
IPR009028	Coatomer/calthrin_app_sub_C
IPR013041	Clathrin_app_Ig-like_sf
IPR026739	AP_beta
IPR012295	TBP_dom_sf
IPR011989	ARM-like
IPR015151	B-adaptin_app_sub_C

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006886	intracellular protein transport
biological_process	GO:0016192	vesicle-mediated transport
cellular_component	GO:0030131	clathrin adaptor complex
cellular_component	GO:0030117	membrane coat
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg27154	Carg27154	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg27154-RA	Carg27154-RA-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg27154-RA.exon.1	Carg27154-RA.exon.1	exon
Carg27154-RA.exon.2	Carg27154-RA.exon.2	exon
Carg27154-RA.exon.3	Carg27154-RA.exon.3	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg27154-RA.CDS.1	Carg27154-RA.CDS.1	CDS
Carg27154-RA.CDS.2	Carg27154-RA.CDS.2	CDS
Carg27154-RA.CDS.3	Carg27154-RA.CDS.3	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg27154-RA.three_prime_UTR.1	Carg27154-RA.three_prime_UTR.1	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR015151	Beta-adaptin appendage, C-terminal subdomain	PFAM	PF09066	B2-adapt-app_C	coord: 101..138 e-value: 1.5E-6 score: 28.2
IPR011989	Armadillo-like helical	GENE3D	G3DSA:1.25.10.10		coord: 16..88 e-value: 1.6E-6 score: 28.8
IPR012295	TBP domain superfamily	GENE3D	G3DSA:3.30.310.10		coord: 95..140 e-value: 4.2E-9 score: 38.4
IPR026739	AP complex subunit beta	PANTHER	PTHR11134	ADAPTER-RELATED PROTEIN COMPLEX, BETA SUBUNIT	coord: 28..63
IPR026739	AP complex subunit beta	PANTHER	PTHR11134	ADAPTER-RELATED PROTEIN COMPLEX, BETA SUBUNIT	coord: 69..138
None	No IPR available	PANTHER	PTHR11134:SF3	AP COMPLEX SUBUNIT BETA	coord: 28..63
None	No IPR available	PANTHER	PTHR11134:SF3	AP COMPLEX SUBUNIT BETA	coord: 69..138
IPR013041	Clathrin adaptor, appendage, Ig-like subdomain superfamily	SUPERFAMILY	SSF49348	Clathrin adaptor appendage domain	coord: 61..96
IPR009028	Coatomer/calthrin adaptor appendage, C-terminal subdomain	SUPERFAMILY	SSF55711	Subdomain of clathrin and coatomer appendage domain	coord: 98..138