Carg27154 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg27154
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Beta-adaptin-like protein
Location	Cucurbita_argyrosperma_scaffold_474 : 38208 .. 39274 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTGGAAAGGCAGATTTGCATGAACAGCAATGTAACAATGTTGAATTGGCATTTAACTGGATATTTGATAGAAACTCGGTTGTTGTAACTTCAGAGTCTACGAGTTCCTTCGGGATCTTCATTTTAATTGTTGAGATCAAAAGATGAAGAGATTTTATTTTTCATGAATTATTTCTTAGATGGGGATCAGACAATCGACTTTTGAAATCGTAAATTTAATGTCAATCGAGTATATGTATCAACCAGATTATCACGTTGAGACCTACCAGTGCATGTTAGGTTGTGTTGAGTCAAATCAGCTCTATTTTTGGTCTCTGATCAATACCAATTTAGCTGCTTGATCAAGCGTAGATGCTTATAACTCACTGTATCTGTAGATGCTTATAACTCACTGTATCTGTAGATGCTTATATAGTGTACCTTAAGGAGCTGCTGGATCAAGCGTAGATGCTTATACTATAGTGTACCTTTGCTAGAATAAGGATTAAAGTAGATGATTCAGCTCATTATCTCTACTAGCATGATTTCAATTGCTAAATCTTTTGCAGGCTCTTTTGAATAATGCTACTGTGGAGACGGATGATCCTGATTTGCGTTATCGTGCGTATATCTATTGGCGTCTCCTATCGACTGATCCAGAGGTTGTGTTCCAAAACATGTCTCAAGGTCCTCCAAGCTCACTTTTGCAGGTAGCTGTGAAGAACAATCAACATCCAGTGTGGTATTTCAATGATAAAATTTCTATGCACATTTTCTTTGCCGAGGATGGGACGATGGAGCGTACAAACTTTCTCGAGGTAAAAAATGATATAGAAATAGTAGAATGCACACTTCAACTGTTCATCTTCTCTGTGGCATTAACTATCTTTTTCATTTCAGACTTGGAGGTCCCTTCCAGATTCGAATGAAGTTTCTAGAGATTTTTCGACCATTCTTATAAACAATGTTGACGCCATTGTCGACTGACTGGCTGCAACGAACATGTTCTTGATTGTCAAAACAAAGCATGCGAACCAGGATGTTTTCTACTTCTCTACAAAATTCCTCAGAGGAATCCCTTTGTT

mRNA sequence

ATGCTTGGAAAGGCAGATTTGCATGAACAGCAATGTAACAATGTTGAATTGGCATTTAACTGGATATTTGATAGAAACTCGGTTGTTGCTCTTTTGAATAATGCTACTGTGGAGACGGATGATCCTGATTTGCGTTATCGTGCGTATATCTATTGGCGTCTCCTATCGACTGATCCAGAGGTTGTGTTCCAAAACATGTCTCAAGGTCCTCCAAGCTCACTTTTGCAGGTAGCTGTGAAGAACAATCAACATCCAGTGTGGTATTTCAATGATAAAATTTCTATGCACATTTTCTTTGCCGAGGATGGGACGATGGAGCGTACAAACTTTCTCGAGACTTGGAGGTCCCTTCCAGATTCGAATGAAGTTTCTAGAGATTTTTCGACCATTCTTATAAACAATGTTGACGCCATTGTCGACTGACTGGCTGCAACGAACATGTTCTTGATTGTCAAAACAAAGCATGCGAACCAGGATGTTTTCTACTTCTCTACAAAATTCCTCAGAGGAATCCCTTTGTT

Coding sequence (CDS)

ATGCTTGGAAAGGCAGATTTGCATGAACAGCAATGTAACAATGTTGAATTGGCATTTAACTGGATATTTGATAGAAACTCGGTTGTTGCTCTTTTGAATAATGCTACTGTGGAGACGGATGATCCTGATTTGCGTTATCGTGCGTATATCTATTGGCGTCTCCTATCGACTGATCCAGAGGTTGTGTTCCAAAACATGTCTCAAGGTCCTCCAAGCTCACTTTTGCAGGTAGCTGTGAAGAACAATCAACATCCAGTGTGGTATTTCAATGATAAAATTTCTATGCACATTTTCTTTGCCGAGGATGGGACGATGGAGCGTACAAACTTTCTCGAGACTTGGAGGTCCCTTCCAGATTCGAATGAAGTTTCTAGAGATTTTTCGACCATTCTTATAAACAATGTTGACGCCATTGTCGACTGA

Protein sequence

MLGKADLHEQQCNNVELAFNWIFDRNSVVALLNNATVETDDPDLRYRAYIYWRLLSTDPEVVFQNMSQGPPSSLLQVAVKNNQHPVWYFNDKISMHIFFAEDGTMERTNFLETWRSLPDSNEVSRDFSTILINNVDAIVD

Homology

[Close]

BLAST of Carg27154 vs. NCBI nr
Match: XP_022157680.1 (beta-adaptin-like protein B [Momordica charantia])

HSP 1 Score: 148.3 bits (373), Expect = 2.0e-32
Identity = 66/82 (80.49%), Postives = 75/82 (91.46%), Query Frame = 0


Query: 59  PEVVFQNMSQGPPSSLLQVAVKNNQHPVWYFNDKISMHIFFAEDGTMERTNFLETWRSLP 118
           P VVFQNMSQGPPSSLLQVAVKNNQ PVWYFNDKISMH+FF EDG MER NFLETWRSLP
Sbjct: 752 PMVVFQNMSQGPPSSLLQVAVKNNQQPVWYFNDKISMHVFFTEDGRMERANFLETWRSLP 811

Query: 119 DSNEVSRDFSTILINNVDAIVD 141
           DSNEVS+DF  I++NN+++++D
Sbjct: 812 DSNEVSKDFPAIVLNNIESVLD 833

HSP 2 Score: 63.2 bits (152), Expect = 8.3e-07
Identity = 28/33 (84.85%), Postives = 31/33 (93.94%), Query Frame = 0


Query: 28  VVALLNNATVETDDPDLRYRAYIYWRLLSTDPE 61
           + A+LNNATVETD+PDLR RAYIYWRLLSTDPE
Sbjct: 504 IQAVLNNATVETDNPDLRDRAYIYWRLLSTDPE 536

[Close]

BLAST of Carg27154 vs. NCBI nr
Match: XP_022958571.1 (beta-adaptin-like protein C [Cucurbita moschata])

HSP 1 Score: 143.7 bits (361), Expect = 4.8e-31
Identity = 65/82 (79.27%), Postives = 73/82 (89.02%), Query Frame = 0


Query: 59  PEVVFQNMSQGPPSSLLQVAVKNNQHPVWYFNDKISMHIFFAEDGTMERTNFLETWRSLP 118
           P VVFQN+SQGPPSSLLQVAVKNNQ PVWYFNDKISMHIFF +DG MER NFLETWRSLP
Sbjct: 751 PMVVFQNLSQGPPSSLLQVAVKNNQQPVWYFNDKISMHIFFTDDGRMERANFLETWRSLP 810

Query: 119 DSNEVSRDFSTILINNVDAIVD 141
           DSNEVS+DF  + I NV+A+++
Sbjct: 811 DSNEVSKDFPALFITNVEAVLE 832

HSP 2 Score: 63.2 bits (152), Expect = 8.3e-07
Identity = 28/33 (84.85%), Postives = 31/33 (93.94%), Query Frame = 0


Query: 28  VVALLNNATVETDDPDLRYRAYIYWRLLSTDPE 61
           + A+LNNATVETD+PDLR RAYIYWRLLSTDPE
Sbjct: 504 IQAVLNNATVETDNPDLRDRAYIYWRLLSTDPE 536

[Close]

BLAST of Carg27154 vs. NCBI nr
Match: XP_022969976.1 (beta-adaptin-like protein B isoform X1 [Cucurbita maxima])

HSP 1 Score: 143.7 bits (361), Expect = 4.8e-31
Identity = 64/82 (78.05%), Postives = 74/82 (90.24%), Query Frame = 0


Query: 59  PEVVFQNMSQGPPSSLLQVAVKNNQHPVWYFNDKISMHIFFAEDGTMERTNFLETWRSLP 118
           P VVFQNMSQGPPSSLLQVAVKNNQ PVWYFNDKISMH+FF +DG MER NFLETWRSLP
Sbjct: 748 PMVVFQNMSQGPPSSLLQVAVKNNQQPVWYFNDKISMHVFFTDDGRMERANFLETWRSLP 807

Query: 119 DSNEVSRDFSTILINNVDAIVD 141
           DSNEVS+DF  I++ N++A+++
Sbjct: 808 DSNEVSKDFPAIVLTNMEAVLE 829

HSP 2 Score: 61.6 bits (148), Expect = 2.4e-06
Identity = 27/33 (81.82%), Postives = 30/33 (90.91%), Query Frame = 0


Query: 28  VVALLNNATVETDDPDLRYRAYIYWRLLSTDPE 61
           +  +LNNATVETD+PDLR RAYIYWRLLSTDPE
Sbjct: 504 IQVVLNNATVETDNPDLRDRAYIYWRLLSTDPE 536

[Close]

BLAST of Carg27154 vs. NCBI nr
Match: XP_022969978.1 (beta-adaptin-like protein B isoform X3 [Cucurbita maxima])

HSP 1 Score: 143.7 bits (361), Expect = 4.8e-31
Identity = 64/82 (78.05%), Postives = 74/82 (90.24%), Query Frame = 0


Query: 59  PEVVFQNMSQGPPSSLLQVAVKNNQHPVWYFNDKISMHIFFAEDGTMERTNFLETWRSLP 118
           P VVFQNMSQGPPSSLLQVAVKNNQ PVWYFNDKISMH+FF +DG MER NFLETWRSLP
Sbjct: 706 PMVVFQNMSQGPPSSLLQVAVKNNQQPVWYFNDKISMHVFFTDDGRMERANFLETWRSLP 765

Query: 119 DSNEVSRDFSTILINNVDAIVD 141
           DSNEVS+DF  I++ N++A+++
Sbjct: 766 DSNEVSKDFPAIVLTNMEAVLE 787

HSP 2 Score: 61.6 bits (148), Expect = 2.4e-06
Identity = 27/33 (81.82%), Postives = 30/33 (90.91%), Query Frame = 0


Query: 28  VVALLNNATVETDDPDLRYRAYIYWRLLSTDPE 61
           +  +LNNATVETD+PDLR RAYIYWRLLSTDPE
Sbjct: 462 IQVVLNNATVETDNPDLRDRAYIYWRLLSTDPE 494

[Close]

BLAST of Carg27154 vs. NCBI nr
Match: XP_022969977.1 (beta-adaptin-like protein B isoform X2 [Cucurbita maxima])

HSP 1 Score: 143.7 bits (361), Expect = 4.8e-31
Identity = 64/82 (78.05%), Postives = 74/82 (90.24%), Query Frame = 0


Query: 59  PEVVFQNMSQGPPSSLLQVAVKNNQHPVWYFNDKISMHIFFAEDGTMERTNFLETWRSLP 118
           P VVFQNMSQGPPSSLLQVAVKNNQ PVWYFNDKISMH+FF +DG MER NFLETWRSLP
Sbjct: 730 PMVVFQNMSQGPPSSLLQVAVKNNQQPVWYFNDKISMHVFFTDDGRMERANFLETWRSLP 789

Query: 119 DSNEVSRDFSTILINNVDAIVD 141
           DSNEVS+DF  I++ N++A+++
Sbjct: 790 DSNEVSKDFPAIVLTNMEAVLE 811

HSP 2 Score: 61.6 bits (148), Expect = 2.4e-06
Identity = 27/33 (81.82%), Postives = 30/33 (90.91%), Query Frame = 0


Query: 28  VVALLNNATVETDDPDLRYRAYIYWRLLSTDPE 61
           +  +LNNATVETD+PDLR RAYIYWRLLSTDPE
Sbjct: 486 IQVVLNNATVETDNPDLRDRAYIYWRLLSTDPE 518

[Close]

BLAST of Carg27154 vs. TAIR10
Match: AT4G11380.2 (Adaptin family protein)

HSP 1 Score: 121.3 bits (303), Expect = 4.7e-28
Identity = 56/82 (68.29%), Postives = 65/82 (79.27%), Query Frame = 0


Query: 59  PEVVFQNMSQGPPSSLLQVAVKNNQHPVWYFNDKISMHIFFAEDGTMERTNFLETWRSLP 118
           P V+FQNMS GPPSSLLQVAVKNNQ PVWYF DKI +H  F EDG MER  FLETWRSLP
Sbjct: 764 PMVLFQNMSAGPPSSLLQVAVKNNQQPVWYFTDKIILHALFGEDGRMERGTFLETWRSLP 823

Query: 119 DSNEVSRDFSTILINNVDAIVD 141
           DSNEV ++F  I I +V++ ++
Sbjct: 824 DSNEVLKEFPGITITSVESTIE 845

HSP 2 Score: 61.6 bits (148), Expect = 4.4e-10
Identity = 27/33 (81.82%), Postives = 30/33 (90.91%), Query Frame = 0


Query: 28  VVALLNNATVETDDPDLRYRAYIYWRLLSTDPE 61
           +  +LNNATVETD+PDLR RAYIYWRLLSTDPE
Sbjct: 526 IQVVLNNATVETDNPDLRDRAYIYWRLLSTDPE 558

[Close]

BLAST of Carg27154 vs. TAIR10
Match: AT4G23460.1 (Adaptin family protein)

HSP 1 Score: 109.0 bits (271), Expect = 2.4e-24
Identity = 51/82 (62.20%), Postives = 63/82 (76.83%), Query Frame = 0


Query: 59  PEVVFQNMSQGPPSSLLQVAVKNNQHPVWYFNDKISMHIFFAEDGTMERTNFLETWRSLP 118
           P V+ QNMS G  SS+LQVAVKNNQ PVWYF DKI ++  F+EDG MER  FLETW+SLP
Sbjct: 741 PMVLSQNMSTGSTSSVLQVAVKNNQQPVWYFEDKIVLNALFSEDGRMERGTFLETWKSLP 800

Query: 119 DSNEVSRDFSTILINNVDAIVD 141
           DSNEV ++F  I I +V++ +D
Sbjct: 801 DSNEVQKEFPGITITSVESTLD 822

HSP 2 Score: 61.6 bits (148), Expect = 4.4e-10
Identity = 27/33 (81.82%), Postives = 30/33 (90.91%), Query Frame = 0


Query: 28  VVALLNNATVETDDPDLRYRAYIYWRLLSTDPE 61
           +  +LNNATVETD+PDLR RAYIYWRLLSTDPE
Sbjct: 504 IQVVLNNATVETDNPDLRDRAYIYWRLLSTDPE 536

[Close]

BLAST of Carg27154 vs. Swiss-Prot
Match: sp|Q9SUS3|APBLB_ARATH (Beta-adaptin-like protein B OS=Arabidopsis thaliana OX=3702 GN=BETAB-AD PE=1 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 8.4e-27
Identity = 56/82 (68.29%), Postives = 65/82 (79.27%), Query Frame = 0


Query: 59  PEVVFQNMSQGPPSSLLQVAVKNNQHPVWYFNDKISMHIFFAEDGTMERTNFLETWRSLP 118
           P V+FQNMS GPPSSLLQVAVKNNQ PVWYF DKI +H  F EDG MER  FLETWRSLP
Sbjct: 742 PMVLFQNMSAGPPSSLLQVAVKNNQQPVWYFTDKIILHALFGEDGRMERGTFLETWRSLP 801

Query: 119 DSNEVSRDFSTILINNVDAIVD 141
           DSNEV ++F  I I +V++ ++
Sbjct: 802 DSNEVLKEFPGITITSVESTIE 823

HSP 2 Score: 61.6 bits (148), Expect = 7.9e-09
Identity = 27/33 (81.82%), Postives = 30/33 (90.91%), Query Frame = 0


Query: 28  VVALLNNATVETDDPDLRYRAYIYWRLLSTDPE 61
           +  +LNNATVETD+PDLR RAYIYWRLLSTDPE
Sbjct: 504 IQVVLNNATVETDNPDLRDRAYIYWRLLSTDPE 536

[Close]

BLAST of Carg27154 vs. Swiss-Prot
Match: sp|O81742|APBLC_ARATH (Beta-adaptin-like protein C OS=Arabidopsis thaliana OX=3702 GN=BETAC-AD PE=1 SV=2)

HSP 1 Score: 109.0 bits (271), Expect = 4.3e-23
Identity = 51/82 (62.20%), Postives = 63/82 (76.83%), Query Frame = 0


Query: 59  PEVVFQNMSQGPPSSLLQVAVKNNQHPVWYFNDKISMHIFFAEDGTMERTNFLETWRSLP 118
           P V+ QNMS G  SS+LQVAVKNNQ PVWYF DKI ++  F+EDG MER  FLETW+SLP
Sbjct: 741 PMVLSQNMSTGSTSSVLQVAVKNNQQPVWYFEDKIVLNALFSEDGRMERGTFLETWKSLP 800

Query: 119 DSNEVSRDFSTILINNVDAIVD 141
           DSNEV ++F  I I +V++ +D
Sbjct: 801 DSNEVQKEFPGITITSVESTLD 822

HSP 2 Score: 61.6 bits (148), Expect = 7.9e-09
Identity = 27/33 (81.82%), Postives = 30/33 (90.91%), Query Frame = 0


Query: 28  VVALLNNATVETDDPDLRYRAYIYWRLLSTDPE 61
           +  +LNNATVETD+PDLR RAYIYWRLLSTDPE
Sbjct: 504 IQVVLNNATVETDNPDLRDRAYIYWRLLSTDPE 536

[Close]

BLAST of Carg27154 vs. Swiss-Prot
Match: sp|Q10567|AP1B1_HUMAN (AP-1 complex subunit beta-1 OS=Homo sapiens OX=9606 GN=AP1B1 PE=1 SV=2)

HSP 1 Score: 56.2 bits (134), Expect = 3.3e-07
Identity = 27/52 (51.92%), Postives = 35/52 (67.31%), Query Frame = 0


Query: 71  PSSLLQVAVKNNQHPVWYFNDKISMHIFFAEDGTMERTNFLETWRSLPDSNE 123
           P + LQVAVKNN   V+YF+    +HI F EDG M+R  FL TW+ +P+ NE
Sbjct: 808 PLNNLQVAVKNN-IDVFYFSTLYPLHILFVEDGKMDRQMFLATWKDIPNENE 858

HSP 2 Score: 47.8 bits (112), Expect = 1.2e-04
Identity = 21/32 (65.62%), Postives = 26/32 (81.25%), Query Frame = 0


Query: 28  VVALLNNATVETDDPDLRYRAYIYWRLLSTDP 60
           V  +L+ AT ++D+PDLR R YIYWRLLSTDP
Sbjct: 503 VQQVLSLATQDSDNPDLRDRGYIYWRLLSTDP 534

[Close]

BLAST of Carg27154 vs. Swiss-Prot
Match: sp|P52303|AP1B1_RAT (AP-1 complex subunit beta-1 OS=Rattus norvegicus OX=10116 GN=Ap1b1 PE=1 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 4.3e-07
Identity = 26/52 (50.00%), Postives = 35/52 (67.31%), Query Frame = 0


Query: 71  PSSLLQVAVKNNQHPVWYFNDKISMHIFFAEDGTMERTNFLETWRSLPDSNE 123
           P + LQVAVKNN   V+YF+    +H+ F EDG M+R  FL TW+ +P+ NE
Sbjct: 811 PLNNLQVAVKNN-IDVFYFSTLYPLHVLFVEDGKMDRQMFLATWKDIPNENE 861

HSP 2 Score: 47.8 bits (112), Expect = 1.2e-04
Identity = 21/32 (65.62%), Postives = 26/32 (81.25%), Query Frame = 0


Query: 28  VVALLNNATVETDDPDLRYRAYIYWRLLSTDP 60
           V  +L+ AT ++D+PDLR R YIYWRLLSTDP
Sbjct: 503 VQQVLSLATQDSDNPDLRDRGYIYWRLLSTDP 534

[Close]

BLAST of Carg27154 vs. Swiss-Prot
Match: sp|Q08DS7|AP1B1_BOVIN (AP-1 complex subunit beta-1 OS=Bos taurus OX=9913 GN=AP2B1 PE=2 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 5.7e-07
Identity = 27/53 (50.94%), Postives = 37/53 (69.81%), Query Frame = 0


Query: 71  PSSLLQVAVKNNQHPVWYFNDKISMHIFFAEDGTMERTNFLETWRSLPDSNEV 124
           P + LQVAVKNN   V+YF+  I +++ F EDG MER  FL TW+ +P+ NE+
Sbjct: 813 PLNNLQVAVKNN-IDVFYFSCLIPLNVLFVEDGKMERQVFLATWKDIPNENEL 864

HSP 2 Score: 47.8 bits (112), Expect = 1.2e-04
Identity = 21/32 (65.62%), Postives = 26/32 (81.25%), Query Frame = 0


Query: 28  VVALLNNATVETDDPDLRYRAYIYWRLLSTDP 60
           V  +L+ AT ++D+PDLR R YIYWRLLSTDP
Sbjct: 503 VQQVLSLATQDSDNPDLRDRGYIYWRLLSTDP 534

[Close]

BLAST of Carg27154 vs. TrEMBL
Match: tr|M5WE51|M5WE51_PRUPE (Beta-adaptin-like protein OS=Prunus persica OX=3760 GN=PRUPE_5G103900 PE=3 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 5.5e-31
Identity = 64/82 (78.05%), Postives = 73/82 (89.02%), Query Frame = 0


Query: 59  PEVVFQNMSQGPPSSLLQVAVKNNQHPVWYFNDKISMHIFFAEDGTMERTNFLETWRSLP 118
           P V FQNMSQGPPSSLLQVAVKNNQ PVWYFNDKIS+H+FF EDG MER NFLETWRSLP
Sbjct: 751 PMVTFQNMSQGPPSSLLQVAVKNNQQPVWYFNDKISLHVFFTEDGRMERANFLETWRSLP 810

Query: 119 DSNEVSRDFSTILINNVDAIVD 141
           DSNE++RDF  I+++NV+A +D
Sbjct: 811 DSNEITRDFPGIVVSNVEATLD 832

HSP 2 Score: 61.6 bits (148), Expect = 1.6e-06
Identity = 27/33 (81.82%), Postives = 30/33 (90.91%), Query Frame = 0


Query: 28  VVALLNNATVETDDPDLRYRAYIYWRLLSTDPE 61
           +  +LNNATVETD+PDLR RAYIYWRLLSTDPE
Sbjct: 504 IQVVLNNATVETDNPDLRDRAYIYWRLLSTDPE 536

[Close]

BLAST of Carg27154 vs. TrEMBL
Match: tr|A0A1S3C1P5|A0A1S3C1P5_CUCME (Beta-adaptin-like protein OS=Cucumis melo OX=3656 GN=LOC103495623 PE=3 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 2.1e-30
Identity = 68/80 (85.00%), Postives = 72/80 (90.00%), Query Frame = 0


Query: 61  VVFQNMSQGPPSSLLQVAVKNNQHPVWYFNDKISMHIFFAEDGTMERTNFLETWRSLPDS 120
           VVFQNMSQGPPSSLLQVAVKNNQ PV YFNDKI MHIFF EDG MER +FLETWRSLPDS
Sbjct: 755 VVFQNMSQGPPSSLLQVAVKNNQQPVLYFNDKIPMHIFFTEDGRMERASFLETWRSLPDS 814

Query: 121 NEVSRDFSTILINNVDAIVD 141
           NEV RDF TILINNV+AI++
Sbjct: 815 NEVIRDFPTILINNVEAILE 834

HSP 2 Score: 63.2 bits (152), Expect = 5.5e-07
Identity = 28/33 (84.85%), Postives = 31/33 (93.94%), Query Frame = 0


Query: 28  VVALLNNATVETDDPDLRYRAYIYWRLLSTDPE 61
           + A+LNNATVETD+PDLR RAYIYWRLLSTDPE
Sbjct: 504 IQAVLNNATVETDNPDLRDRAYIYWRLLSTDPE 536

[Close]

BLAST of Carg27154 vs. TrEMBL
Match: tr|A0A2N9FW79|A0A2N9FW79_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS19093 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 3.5e-30
Identity = 62/82 (75.61%), Postives = 74/82 (90.24%), Query Frame = 0


Query: 59  PEVVFQNMSQGPPSSLLQVAVKNNQHPVWYFNDKISMHIFFAEDGTMERTNFLETWRSLP 118
           P V+FQN+SQGPPSSLLQVAVKN+Q PVWYFNDK+ +H+FF EDG MERTNFLETWRSLP
Sbjct: 320 PMVMFQNLSQGPPSSLLQVAVKNSQQPVWYFNDKVLLHVFFTEDGRMERTNFLETWRSLP 379

Query: 119 DSNEVSRDFSTILINNVDAIVD 141
           DSNEVS+DF  I++N+V+A +D
Sbjct: 380 DSNEVSKDFPDIVVNSVEATLD 401

HSP 2 Score: 62.0 bits (149), Expect = 1.2e-06
Identity = 28/37 (75.68%), Postives = 30/37 (81.08%), Query Frame = 0


Query: 24  DRNSVVALLNNATVETDDPDLRYRAYIYWRLLSTDPE 61
           D      +LNNATVETD+PDLR RAYIYWRLLSTDPE
Sbjct: 105 DEPEAKVVLNNATVETDNPDLRDRAYIYWRLLSTDPE 141

[Close]

BLAST of Carg27154 vs. TrEMBL
Match: tr|A0A1S3ATD0|A0A1S3ATD0_CUCME (Beta-adaptin-like protein OS=Cucumis melo OX=3656 GN=LOC103482767 PE=3 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 3.5e-30
Identity = 64/82 (78.05%), Postives = 72/82 (87.80%), Query Frame = 0


Query: 59  PEVVFQNMSQGPPSSLLQVAVKNNQHPVWYFNDKISMHIFFAEDGTMERTNFLETWRSLP 118
           P VVFQNMSQGPPSSLLQVAVKNNQ  VWYFNDKI MHIFF +DG MER NFLETWRSLP
Sbjct: 748 PMVVFQNMSQGPPSSLLQVAVKNNQQQVWYFNDKIPMHIFFTDDGRMERANFLETWRSLP 807

Query: 119 DSNEVSRDFSTILINNVDAIVD 141
           DSNEVS+DF  I++ NV+A+++
Sbjct: 808 DSNEVSKDFPAIVLTNVEAVLE 829

HSP 2 Score: 61.2 bits (147), Expect = 2.1e-06
Identity = 27/33 (81.82%), Postives = 31/33 (93.94%), Query Frame = 0


Query: 28  VVALLNNATVETDDPDLRYRAYIYWRLLSTDPE 61
           + A+L+NATVETD+PDLR RAYIYWRLLSTDPE
Sbjct: 504 IQAVLDNATVETDNPDLRDRAYIYWRLLSTDPE 536

[Close]

BLAST of Carg27154 vs. TrEMBL
Match: tr|A0A2P6P6R9|A0A2P6P6R9_ROSCH (Beta-adaptin-like protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr7g0197091 PE=3 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 6.0e-30
Identity = 62/82 (75.61%), Postives = 71/82 (86.59%), Query Frame = 0


Query: 59  PEVVFQNMSQGPPSSLLQVAVKNNQHPVWYFNDKISMHIFFAEDGTMERTNFLETWRSLP 118
           P V FQNMSQGPPSSLLQVAVKNNQ PVWYFNDKI +H+FF EDG MER NFLETWRSLP
Sbjct: 749 PMVTFQNMSQGPPSSLLQVAVKNNQQPVWYFNDKIPLHVFFTEDGRMERANFLETWRSLP 808

Query: 119 DSNEVSRDFSTILINNVDAIVD 141
           DSNE+++DF  I++ NV+A +D
Sbjct: 809 DSNEITKDFPGIVVGNVEATLD 830

HSP 2 Score: 61.6 bits (148), Expect = 1.6e-06
Identity = 27/33 (81.82%), Postives = 30/33 (90.91%), Query Frame = 0


Query: 28  VVALLNNATVETDDPDLRYRAYIYWRLLSTDPE 61
           +  +LNNATVETD+PDLR RAYIYWRLLSTDPE
Sbjct: 504 IQVVLNNATVETDNPDLRDRAYIYWRLLSTDPE 536

The following BLAST results are available for this feature:

BLAST of Carg27154 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022157680.1	2.0e-32	80.49	beta-adaptin-like protein B [Momordica charantia]	[more]
XP_022958571.1	4.8e-31	79.27	beta-adaptin-like protein C [Cucurbita moschata]	[more]
XP_022969976.1	4.8e-31	78.05	beta-adaptin-like protein B isoform X1 [Cucurbita maxima]	[more]
XP_022969978.1	4.8e-31	78.05	beta-adaptin-like protein B isoform X3 [Cucurbita maxima]	[more]
XP_022969977.1	4.8e-31	78.05	beta-adaptin-like protein B isoform X2 [Cucurbita maxima]	[more]

BLAST of Carg27154 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G11380.2	4.7e-28	68.29	Adaptin family protein	[more]
AT4G23460.1	2.4e-24	62.20	Adaptin family protein	[more]

BLAST of Carg27154 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9SUS3\|APBLB_ARATH	8.4e-27	68.29	Beta-adaptin-like protein B OS=Arabidopsis thaliana OX=3702 GN=BETAB-AD PE=1 SV=...	[more]
sp\|O81742\|APBLC_ARATH	4.3e-23	62.20	Beta-adaptin-like protein C OS=Arabidopsis thaliana OX=3702 GN=BETAC-AD PE=1 SV=...	[more]
sp\|Q10567\|AP1B1_HUMAN	3.3e-07	51.92	AP-1 complex subunit beta-1 OS=Homo sapiens OX=9606 GN=AP1B1 PE=1 SV=2	[more]
sp\|P52303\|AP1B1_RAT	4.3e-07	50.00	AP-1 complex subunit beta-1 OS=Rattus norvegicus OX=10116 GN=Ap1b1 PE=1 SV=1	[more]
sp\|Q08DS7\|AP1B1_BOVIN	5.7e-07	50.94	AP-1 complex subunit beta-1 OS=Bos taurus OX=9913 GN=AP2B1 PE=2 SV=1	[more]

BLAST of Carg27154 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|M5WE51\|M5WE51_PRUPE	5.5e-31	78.05	Beta-adaptin-like protein OS=Prunus persica OX=3760 GN=PRUPE_5G103900 PE=3 SV=1	[more]
tr\|A0A1S3C1P5\|A0A1S3C1P5_CUCME	2.1e-30	85.00	Beta-adaptin-like protein OS=Cucumis melo OX=3656 GN=LOC103495623 PE=3 SV=1	[more]
tr\|A0A2N9FW79\|A0A2N9FW79_FAGSY	3.5e-30	75.61	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS19093 PE=4 SV=1	[more]
tr\|A0A1S3ATD0\|A0A1S3ATD0_CUCME	3.5e-30	78.05	Beta-adaptin-like protein OS=Cucumis melo OX=3656 GN=LOC103482767 PE=3 SV=1	[more]
tr\|A0A2P6P6R9\|A0A2P6P6R9_ROSCH	6.0e-30	75.61	Beta-adaptin-like protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr7g0197091 PE...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0030117	membrane coat
GO:0030131	clathrin adaptor complex

Vocabulary: **Biological Process**
Term	Definition
GO:0006886	intracellular protein transport
GO:0016192	vesicle-mediated transport

Vocabulary: **INTERPRO**
Term	Definition
IPR009028	Coatomer/calthrin_app_sub_C
IPR013041	Clathrin_app_Ig-like_sf
IPR026739	AP_beta
IPR012295	TBP_dom_sf
IPR011989	ARM-like
IPR015151	B-adaptin_app_sub_C

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006886	intracellular protein transport
biological_process	GO:0016192	vesicle-mediated transport
cellular_component	GO:0030131	clathrin adaptor complex
cellular_component	GO:0030117	membrane coat
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg27154-RA	Carg27154-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR015151	Beta-adaptin appendage, C-terminal subdomain	PFAM	PF09066	B2-adapt-app_C	coord: 101..138 e-value: 1.5E-6 score: 28.2
IPR011989	Armadillo-like helical	GENE3D	G3DSA:1.25.10.10		coord: 16..88 e-value: 1.6E-6 score: 28.8
IPR012295	TBP domain superfamily	GENE3D	G3DSA:3.30.310.10		coord: 95..140 e-value: 4.2E-9 score: 38.4
IPR026739	AP complex subunit beta	PANTHER	PTHR11134	ADAPTER-RELATED PROTEIN COMPLEX, BETA SUBUNIT	coord: 28..63
IPR026739	AP complex subunit beta	PANTHER	PTHR11134	ADAPTER-RELATED PROTEIN COMPLEX, BETA SUBUNIT	coord: 69..138
None	No IPR available	PANTHER	PTHR11134:SF3	AP COMPLEX SUBUNIT BETA	coord: 28..63
None	No IPR available	PANTHER	PTHR11134:SF3	AP COMPLEX SUBUNIT BETA	coord: 69..138
IPR013041	Clathrin adaptor, appendage, Ig-like subdomain superfamily	SUPERFAMILY	SSF49348	Clathrin adaptor appendage domain	coord: 61..96
IPR009028	Coatomer/calthrin adaptor appendage, C-terminal subdomain	SUPERFAMILY	SSF55711	Subdomain of clathrin and coatomer appendage domain	coord: 98..138

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg27154	Cla015623	Watermelon (97103) v1	carwmB0296
Carg27154	Csa7G041890	Cucumber (Chinese Long) v2	carcuB0329
Carg27154	MELO3C018841	Melon (DHL92) v3.5.1	carmeB0304
Carg27154	ClCG02G002170	Watermelon (Charleston Gray)	carwcgB0296
Carg27154	CSPI07G03450	Wild cucumber (PI 183967)	carcpiB0335
Carg27154	Lsi11G014250	Bottle gourd (USVL1VR-Ls)	carlsiB278
Carg27154	CsGy7G003120	Cucumber (Gy14) v2	carcgybB0315
Carg27154	MELO3C018841.2	Melon (DHL92) v3.6.1	carmedB0315
Carg27154	CsaV3_7G003330	Cucumber (Chinese Long) v3	carcucB0335
Carg27154	Cla97C02G028570	Watermelon (97103) v2	carwmbB0312
Carg27154	Bhi05G001206	Wax gourd	carwgoB0390

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg27154	Cucumber (Gy14) v1	carcgyB0354
Carg27154	Cucurbita maxima (Rimu)	carcmaB0420
Carg27154	Cucurbita moschata (Rifu)	carcmoB0415
Carg27154	Cucurbita pepo (Zucchini)	carcpeB0421