Carg27122-RA (mRNA) Silver-seed gourd
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGCTCTGCAGCACCCACTCCAGCCCACCAGAGTGGACTGGAAGGAGACGGCGGAGAGGCATGTGATCATGCTGGATGTGCCTGGACGACGAGAACAGGGTCATCAAAGCGATGGGAGAGAGGAAAAGGGAGGAGCAAAAACAGAGTGGAGAGAAGCTATGGCAAATTGTGGAGGCAGTTTGGGGTGCCCAGAAATGTGGATATGGAGTCTGTTAGAGCAGGGCTGGAGAATGGGGTTCTCACTCTCACATTGTCCAAGGTCTCCCCGGAGAAGGTTAAGGATCCCAAAGTGGTGAGCATTGAAGAACCGCGGGCGGAGCTGACCAAGTCGGGCGGAGCCAAGCAGGAGCTCTGA ATGCTCTGCAGCACCCACTCCAGCCCACCAGAGTGGACTGGAAGGAGACGGCGGAGAGGCATAAATGTGGATATGGAGTCTGTTAGAGCAGGGCTGGAGAATGGGGTTCTCACTCTCACATTGTCCAAGGTCTCCCCGGAGAAGGTTAAGGATCCCAAAGTGGTGAGCATTGAAGAACCGCGGGCGGAGCTGACCAAGTCGGGCGGAGCCAAGCAGGAGCTCTGA ATGCTCTGCAGCACCCACTCCAGCCCACCAGAGTGGACTGGAAGGAGACGGCGGAGAGGCATAAATGTGGATATGGAGTCTGTTAGAGCAGGGCTGGAGAATGGGGTTCTCACTCTCACATTGTCCAAGGTCTCCCCGGAGAAGGTTAAGGATCCCAAAGTGGTGAGCATTGAAGAACCGCGGGCGGAGCTGACCAAGTCGGGCGGAGCCAAGCAGGAGCTCTGA MLCSTHSSPPEWTGRRRRRGINVDMESVRAGLENGVLTLTLSKVSPEKVKDPKVVSIEEPRAELTKSGGAKQEL
BLAST of Carg27122-RA vs. NCBI nr
Match: XP_022932486.1 (22.0 kDa class IV heat shock protein-like [Cucurbita moschata]) HSP 1 Score: 97.4 bits (241), Expect = 2.1e-17 Identity = 51/53 (96.23%), Postives = 51/53 (96.23%), Query Frame = 0
BLAST of Carg27122-RA vs. NCBI nr
Match: XP_022973418.1 (22.0 kDa class IV heat shock protein-like [Cucurbita maxima]) HSP 1 Score: 93.6 bits (231), Expect = 3.0e-16 Identity = 50/60 (83.33%), Postives = 54/60 (90.00%), Query Frame = 0
BLAST of Carg27122-RA vs. NCBI nr
Match: XP_023523855.1 (22.0 kDa class IV heat shock protein-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 90.5 bits (223), Expect = 2.6e-15 Identity = 48/53 (90.57%), Postives = 49/53 (92.45%), Query Frame = 0
BLAST of Carg27122-RA vs. NCBI nr
Match: XP_022932435.1 (22.0 kDa class IV heat shock protein-like [Cucurbita moschata]) HSP 1 Score: 89.7 bits (221), Expect = 4.4e-15 Identity = 47/53 (88.68%), Postives = 48/53 (90.57%), Query Frame = 0
BLAST of Carg27122-RA vs. NCBI nr
Match: XP_008459498.1 (PREDICTED: 22.0 kDa class IV heat shock protein [Cucumis melo]) HSP 1 Score: 69.7 bits (169), Expect = 4.7e-09 Identity = 37/63 (58.73%), Postives = 47/63 (74.60%), Query Frame = 0
BLAST of Carg27122-RA vs. TAIR10
Match: AT4G10250.1 (HSP20-like chaperones superfamily protein) HSP 1 Score: 56.6 bits (135), Expect = 7.5e-09 Identity = 30/49 (61.22%), Postives = 40/49 (81.63%), Query Frame = 0
BLAST of Carg27122-RA vs. Swiss-Prot
Match: sp|P30236|HSP41_SOYBN (22.0 kDa class IV heat shock protein OS=Glycine max OX=3847 GN=HSP22.0 PE=3 SV=1) HSP 1 Score: 58.9 bits (141), Expect = 2.7e-08 Identity = 35/62 (56.45%), Postives = 45/62 (72.58%), Query Frame = 0
BLAST of Carg27122-RA vs. Swiss-Prot
Match: sp|Q38806|HSP22_ARATH (22.0 kDa heat shock protein OS=Arabidopsis thaliana OX=3702 GN=HSP22.0 PE=2 SV=1) HSP 1 Score: 56.6 bits (135), Expect = 1.3e-07 Identity = 30/49 (61.22%), Postives = 40/49 (81.63%), Query Frame = 0
BLAST of Carg27122-RA vs. Swiss-Prot
Match: sp|P19244|HSP41_PEA (22.7 kDa class IV heat shock protein OS=Pisum sativum OX=3888 GN=HSP22.7 PE=2 SV=1) HSP 1 Score: 51.2 bits (121), Expect = 5.7e-06 Identity = 24/38 (63.16%), Postives = 33/38 (86.84%), Query Frame = 0
BLAST of Carg27122-RA vs. TrEMBL
Match: tr|A0A1S3CAU1|A0A1S3CAU1_CUCME (22.0 kDa class IV heat shock protein OS=Cucumis melo OX=3656 GN=LOC103498616 PE=3 SV=1) HSP 1 Score: 69.7 bits (169), Expect = 3.1e-09 Identity = 37/63 (58.73%), Postives = 47/63 (74.60%), Query Frame = 0
BLAST of Carg27122-RA vs. TrEMBL
Match: tr|A0A0A0KSN3|A0A0A0KSN3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G646740 PE=3 SV=1) HSP 1 Score: 62.8 bits (151), Expect = 3.8e-07 Identity = 34/63 (53.97%), Postives = 45/63 (71.43%), Query Frame = 0
BLAST of Carg27122-RA vs. TrEMBL
Match: tr|V7BHH5|V7BHH5_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_007G113700g PE=3 SV=1) HSP 1 Score: 62.8 bits (151), Expect = 3.8e-07 Identity = 36/62 (58.06%), Postives = 46/62 (74.19%), Query Frame = 0
BLAST of Carg27122-RA vs. TrEMBL
Match: tr|A0A251K0Z0|A0A251K0Z0_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_10G121600 PE=3 SV=1) HSP 1 Score: 62.4 bits (150), Expect = 5.0e-07 Identity = 36/63 (57.14%), Postives = 46/63 (73.02%), Query Frame = 0
BLAST of Carg27122-RA vs. TrEMBL
Match: tr|A0A067KS43|A0A067KS43_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_06695 PE=3 SV=1) HSP 1 Score: 62.0 bits (149), Expect = 6.5e-07 Identity = 31/53 (58.49%), Postives = 40/53 (75.47%), Query Frame = 0
The following BLAST results are available for this feature:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
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