Carg27122 (gene) Silver-seed gourd

Overview
NameCarg27122
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Description22.0 kDa class IV heat shock protein
LocationCucurbita_argyrosperma_scaffold_366 : 136476 .. 136830 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTCTGCAGCACCCACTCCAGCCCACCAGAGTGGACTGGAAGGAGACGGCGGAGAGGCATGTGATCATGCTGGATGTGCCTGGACGACGAGAACAGGGTCATCAAAGCGATGGGAGAGAGGAAAAGGGAGGAGCAAAAACAGAGTGGAGAGAAGCTATGGCAAATTGTGGAGGCAGTTTGGGGTGCCCAGAAATGTGGATATGGAGTCTGTTAGAGCAGGGCTGGAGAATGGGGTTCTCACTCTCACATTGTCCAAGGTCTCCCCGGAGAAGGTTAAGGATCCCAAAGTGGTGAGCATTGAAGAACCGCGGGCGGAGCTGACCAAGTCGGGCGGAGCCAAGCAGGAGCTCTGA

mRNA sequence

ATGCTCTGCAGCACCCACTCCAGCCCACCAGAGTGGACTGGAAGGAGACGGCGGAGAGGCATAAATGTGGATATGGAGTCTGTTAGAGCAGGGCTGGAGAATGGGGTTCTCACTCTCACATTGTCCAAGGTCTCCCCGGAGAAGGTTAAGGATCCCAAAGTGGTGAGCATTGAAGAACCGCGGGCGGAGCTGACCAAGTCGGGCGGAGCCAAGCAGGAGCTCTGA

Coding sequence (CDS)

ATGCTCTGCAGCACCCACTCCAGCCCACCAGAGTGGACTGGAAGGAGACGGCGGAGAGGCATAAATGTGGATATGGAGTCTGTTAGAGCAGGGCTGGAGAATGGGGTTCTCACTCTCACATTGTCCAAGGTCTCCCCGGAGAAGGTTAAGGATCCCAAAGTGGTGAGCATTGAAGAACCGCGGGCGGAGCTGACCAAGTCGGGCGGAGCCAAGCAGGAGCTCTGA

Protein sequence

MLCSTHSSPPEWTGRRRRRGINVDMESVRAGLENGVLTLTLSKVSPEKVKDPKVVSIEEPRAELTKSGGAKQEL
Homology
[Close]
BLAST of Carg27122 vs. NCBI nr
Match: XP_022932486.1 (22.0 kDa class IV heat shock protein-like [Cucurbita moschata])

HSP 1 Score: 97.4 bits (241), Expect = 2.1e-17
Identity = 51/53 (96.23%), Postives = 51/53 (96.23%), Query Frame = 0 

Query: 22  NVDMESVRAGLENGVLTLTLSKVSPEKVKDPKVVSIEEPRAELTKSGGAKQEL 75
           N DMESVRA LENGVLTLTLSKVSPEKVKDPKVVSIEEPRAELTKSGGAKQEL
Sbjct: 130 NADMESVRARLENGVLTLTLSKVSPEKVKDPKVVSIEEPRAELTKSGGAKQEL 182

[Close]
BLAST of Carg27122 vs. NCBI nr
Match: XP_022973418.1 (22.0 kDa class IV heat shock protein-like [Cucurbita maxima])

HSP 1 Score: 93.6 bits (231), Expect = 3.0e-16
Identity = 50/60 (83.33%), Postives = 54/60 (90.00%), Query Frame = 0 

Query: 15  RRRRRGINVDMESVRAGLENGVLTLTLSKVSPEKVKDPKVVSIEEPRAELTKSGGAKQEL 74
           R+ R   N DMESVRA LENGVLT+TLSKVSPEKVK+PKVVSIEEPRAE+TKSGGAKQEL
Sbjct: 123 RQFRLPRNADMESVRARLENGVLTVTLSKVSPEKVKEPKVVSIEEPRAEMTKSGGAKQEL 182

[Close]
BLAST of Carg27122 vs. NCBI nr
Match: XP_023523855.1 (22.0 kDa class IV heat shock protein-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 90.5 bits (223), Expect = 2.6e-15
Identity = 48/53 (90.57%), Postives = 49/53 (92.45%), Query Frame = 0 

Query: 22  NVDMESVRAGLENGVLTLTLSKVSPEKVKDPKVVSIEEPRAELTKSGGAKQEL 75
           NVDMESVRA LENGVLT+TLSKVSPEKVKDPKVVSIEEPRAE  K GGAKQEL
Sbjct: 130 NVDMESVRARLENGVLTVTLSKVSPEKVKDPKVVSIEEPRAEQGKLGGAKQEL 182

[Close]
BLAST of Carg27122 vs. NCBI nr
Match: XP_022932435.1 (22.0 kDa class IV heat shock protein-like [Cucurbita moschata])

HSP 1 Score: 89.7 bits (221), Expect = 4.4e-15
Identity = 47/53 (88.68%), Postives = 48/53 (90.57%), Query Frame = 0 

Query: 22  NVDMESVRAGLENGVLTLTLSKVSPEKVKDPKVVSIEEPRAELTKSGGAKQEL 75
           N DMESVRA LENGVLT+TLSKVSPEKVKDPKVVSIEEPRAE  K GGAKQEL
Sbjct: 130 NADMESVRARLENGVLTVTLSKVSPEKVKDPKVVSIEEPRAEQAKLGGAKQEL 182

[Close]
BLAST of Carg27122 vs. NCBI nr
Match: XP_008459498.1 (PREDICTED: 22.0 kDa class IV heat shock protein [Cucumis melo])

HSP 1 Score: 69.7 bits (169), Expect = 4.7e-09
Identity = 37/63 (58.73%), Postives = 47/63 (74.60%), Query Frame = 0 

Query: 15  RRRRRGINVDMESVRAGLENGVLTLTLSKVSPEKVKDPKVVSI---EEPRAELTKSGGAK 74
           R+ R  +N D+ESV+A LENGVL +TLSK+SPEK+K P+VV I   + P  E+ KSG AK
Sbjct: 127 RQLRLPVNADLESVKAKLENGVLKITLSKLSPEKIKGPRVVGILDEQPPAGEINKSGAAK 186

[Close]
BLAST of Carg27122 vs. TAIR10
Match: AT4G10250.1 (HSP20-like chaperones superfamily protein)

HSP 1 Score: 56.6 bits (135), Expect = 7.5e-09
Identity = 30/49 (61.22%), Postives = 40/49 (81.63%), Query Frame = 0 

Query: 22  NVDMESVRAGLENGVLTLTLSKVSPEKVKDPKVVSI---EEPRAELTKS 68
           NVDMESV+A LENGVLT+ L+K+SPEKVK P+VV+I   E+  A+++ S
Sbjct: 142 NVDMESVKAKLENGVLTINLTKLSPEKVKGPRVVNIAAEEDQTAKISSS 190

[Close]
BLAST of Carg27122 vs. Swiss-Prot
Match: sp|P30236|HSP41_SOYBN (22.0 kDa class IV heat shock protein OS=Glycine max OX=3847 GN=HSP22.0 PE=3 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 2.7e-08
Identity = 35/62 (56.45%), Postives = 45/62 (72.58%), Query Frame = 0 

Query: 15  RRRRRGINVDMESVRAGLENGVLTLTLSKVSPEKVKDPKVVSI--EEPRAELTKSGGAKQ 74
           R+ R   NVD++SV+A LENGVLTLTL K+SP K+K P+VVSI  E+ +     + GAKQ
Sbjct: 131 RQFRLPQNVDLDSVKAKLENGVLTLTLDKLSPGKIKGPRVVSIAGEDHQQGNLNNDGAKQ 190

[Close]
BLAST of Carg27122 vs. Swiss-Prot
Match: sp|Q38806|HSP22_ARATH (22.0 kDa heat shock protein OS=Arabidopsis thaliana OX=3702 GN=HSP22.0 PE=2 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.3e-07
Identity = 30/49 (61.22%), Postives = 40/49 (81.63%), Query Frame = 0 

Query: 22  NVDMESVRAGLENGVLTLTLSKVSPEKVKDPKVVSI---EEPRAELTKS 68
           NVDMESV+A LENGVLT+ L+K+SPEKVK P+VV+I   E+  A+++ S
Sbjct: 142 NVDMESVKAKLENGVLTINLTKLSPEKVKGPRVVNIAAEEDQTAKISSS 190

[Close]
BLAST of Carg27122 vs. Swiss-Prot
Match: sp|P19244|HSP41_PEA (22.7 kDa class IV heat shock protein OS=Pisum sativum OX=3888 GN=HSP22.7 PE=2 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 5.7e-06
Identity = 24/38 (63.16%), Postives = 33/38 (86.84%), Query Frame = 0 

Query: 22  NVDMESVRAGLENGVLTLTLSKVSPEKVKDPKVVSIEE 60
           NVD++SV+A +ENGVLTLTL K+S +K+K P++VSI E
Sbjct: 146 NVDLDSVKAKMENGVLTLTLHKLSHDKIKGPRMVSIVE 183

[Close]
BLAST of Carg27122 vs. TrEMBL
Match: tr|A0A1S3CAU1|A0A1S3CAU1_CUCME (22.0 kDa class IV heat shock protein OS=Cucumis melo OX=3656 GN=LOC103498616 PE=3 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 3.1e-09
Identity = 37/63 (58.73%), Postives = 47/63 (74.60%), Query Frame = 0 

Query: 15  RRRRRGINVDMESVRAGLENGVLTLTLSKVSPEKVKDPKVVSI---EEPRAELTKSGGAK 74
           R+ R  +N D+ESV+A LENGVL +TLSK+SPEK+K P+VV I   + P  E+ KSG AK
Sbjct: 127 RQLRLPVNADLESVKAKLENGVLKITLSKLSPEKIKGPRVVGILDEQPPAGEINKSGAAK 186

[Close]
BLAST of Carg27122 vs. TrEMBL
Match: tr|A0A0A0KSN3|A0A0A0KSN3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G646740 PE=3 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 3.8e-07
Identity = 34/63 (53.97%), Postives = 45/63 (71.43%), Query Frame = 0 

Query: 15  RRRRRGINVDMESVRAGLENGVLTLTLSKVSPEKVKDPKVVSI---EEPRAELTKSGGAK 74
           R+ R  +N D+ESV+A LENGVL ++L K+S EK+K P+VV I   + P  E+ KSG AK
Sbjct: 127 RQLRLPVNADLESVKAKLENGVLKISLLKLSQEKIKGPRVVGILDEQPPAGEMNKSGAAK 186

[Close]
BLAST of Carg27122 vs. TrEMBL
Match: tr|V7BHH5|V7BHH5_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_007G113700g PE=3 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 3.8e-07
Identity = 36/62 (58.06%), Postives = 46/62 (74.19%), Query Frame = 0 

Query: 15  RRRRRGINVDMESVRAGLENGVLTLTLSKVSPEKVKDPKVVSI--EEPRAELTKSGGAKQ 74
           R+ R   NVD++SV+A LENGVLTLTL K+SPEK+K P+VVSI  E+ +     + GAKQ
Sbjct: 131 RQFRLPQNVDLDSVKAKLENGVLTLTLDKLSPEKIKGPRVVSIAGEDQQQAKLSTDGAKQ 190

[Close]
BLAST of Carg27122 vs. TrEMBL
Match: tr|A0A251K0Z0|A0A251K0Z0_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_10G121600 PE=3 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 5.0e-07
Identity = 36/63 (57.14%), Postives = 46/63 (73.02%), Query Frame = 0 

Query: 15  RRRRRGINVDMESVRAGLENGVLTLTLSKVSPEKVKDPKVVSI---EEPRAELTKSGGAK 74
           R+ R   NVDM+SV+A LENGVLTL+ SK+SP+K+K P+VVSI   E+P     K+  AK
Sbjct: 135 RQFRLPDNVDMDSVKAKLENGVLTLSFSKLSPDKIKGPRVVSIAGEEKPEPAKLKNSEAK 194

[Close]
BLAST of Carg27122 vs. TrEMBL
Match: tr|A0A067KS43|A0A067KS43_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_06695 PE=3 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 6.5e-07
Identity = 31/53 (58.49%), Postives = 40/53 (75.47%), Query Frame = 0 

Query: 22  NVDMESVRAGLENGVLTLTLSKVSPEKVKDPKVVSIEEPRAELTKSGGAKQEL 75
           NVD++SV+A LENGVLTL+ SK+SP+K+K P+VVSI      +    GAKQEL
Sbjct: 142 NVDLDSVKAKLENGVLTLSFSKLSPDKIKGPRVVSIAGEENAMLTDSGAKQEL 194

The following BLAST results are available for this feature:
BLAST of Carg27122 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022932486.12.1e-1796.2322.0 kDa class IV heat shock protein-like [Cucurbita moschata][more]
XP_022973418.13.0e-1683.3322.0 kDa class IV heat shock protein-like [Cucurbita maxima][more]
XP_023523855.12.6e-1590.5722.0 kDa class IV heat shock protein-like [Cucurbita pepo subsp. pepo][more]
XP_022932435.14.4e-1588.6822.0 kDa class IV heat shock protein-like [Cucurbita moschata][more]
XP_008459498.14.7e-0958.73PREDICTED: 22.0 kDa class IV heat shock protein [Cucumis melo][more]
BLAST of Carg27122 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G10250.17.5e-0961.22HSP20-like chaperones superfamily protein[more]
BLAST of Carg27122 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|P30236|HSP41_SOYBN2.7e-0856.4522.0 kDa class IV heat shock protein OS=Glycine max OX=3847 GN=HSP22.0 PE=3 SV=1[more]
sp|Q38806|HSP22_ARATH1.3e-0761.2222.0 kDa heat shock protein OS=Arabidopsis thaliana OX=3702 GN=HSP22.0 PE=2 SV=1[more]
sp|P19244|HSP41_PEA5.7e-0663.1622.7 kDa class IV heat shock protein OS=Pisum sativum OX=3888 GN=HSP22.7 PE=2 SV... [more]
BLAST of Carg27122 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3CAU1|A0A1S3CAU1_CUCME3.1e-0958.7322.0 kDa class IV heat shock protein OS=Cucumis melo OX=3656 GN=LOC103498616 PE=... [more]
tr|A0A0A0KSN3|A0A0A0KSN3_CUCSA3.8e-0753.97Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G646740 PE=3 SV=1[more]
tr|V7BHH5|V7BHH5_PHAVU3.8e-0758.06Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_007G113700g PE=3 ... [more]
tr|A0A251K0Z0|A0A251K0Z0_MANES5.0e-0757.14Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_10G121600 PE=3 SV=... [more]
tr|A0A067KS43|A0A067KS43_JATCU6.5e-0758.49Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_06695 PE=3 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR008978HSP20-like_chaperone
IPR002068A-crystallin/Hsp20_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg27122-RACarg27122-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002068Alpha crystallin/Hsp20 domainPFAMPF00011HSP20coord: 22..57
e-value: 2.5E-5
score: 24.3
IPR008978HSP20-like chaperoneGENE3DG3DSA:2.60.40.790coord: 15..72
e-value: 3.6E-6
score: 28.5
IPR008978HSP20-like chaperoneSUPERFAMILYSSF49764HSP20-like chaperonescoord: 21..54
NoneNo IPR availableCDDcd06464ACD_sHsps-likecoord: 22..43
e-value: 1.11245E-4
score: 34.4521

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg27122CmaCh01G008860Cucurbita maxima (Rimu)carcmaB0855
Carg27122Cp4.1LG02g09810Cucurbita pepo (Zucchini)carcpeB0865
Carg27122Cla97C08G145950Watermelon (97103) v2carwmbB0635
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Carg27122Cucurbita moschata (Rifu)carcmoB0831
Carg27122Cucurbita moschata (Rifu)carcmoB0832
Carg27122Bottle gourd (USVL1VR-Ls)carlsiB555
Carg27122Watermelon (Charleston Gray)carwcgB0592
Carg27122Watermelon (97103) v1carwmB0607