Carg27119-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg27119-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Peptide chain release factor, putative
Location	Cucurbita_argyrosperma_scaffold_366 : 82232 .. 87318 (+)
Sequence length	1332

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCATTTTGATCGAAAACCCACACAGAAGCTGCAACATGAAAAATCGGGAGTCCATGGCATATCTCTCATAGCAGGAAGCCATGATTTTCCACATCAGTGACTTCAAGCCACAACTTGTTCGTAACCATGATTAAAAACGACCCAATTTTGAAAACCACATTATCGTTGTGAAAAAACAAAACCCAATAGGAGAAATTCGTTTTGTGAATTGCGAAAATGGCAACCGCAAATATGCTCTGGAAATCCGCCAAGATTCTTAGTATTCCTGTTCCAATAGCAAGCAACGGTAGATGGGGAAGGATTGGCTGTACATTTCGAATTCACCAATTCGAGGGCTCTTTCTTCTCCAACTCACTGCGTTCCAATTGCAGCTCTAGCAGTGCAAATTCAATATGGAAAGGAAAAGAGTATTTGATTTTGTCCGACGAAGAGCTGATGAGACAGTGCGAAATGGACACGTTTAAGGCCTCAGGTCCCGGTGGTCAGCACCGCAACAAGCGCGAGTCCGCTGTCCGTTTGAAGCACATTCCCACTGGTATCACTGCTCAGGTTTATATTTGTCTGATAAATATAGTCAAGTTCAATTATATACTTCAGCTTCTTAGCTCTCAAGTTAATCTTTGGCCCTTTATTTCCAAGGCTGTCGAGGATCGATCACAGCATAAGAATCGAGCGAGTGCTTTAGCTCGCCTACGCGCTCAATTGGCCCTAAAAGGTGGCTGGATTGTACATGCTTGTTTGTTTTTTAATTTCATTTTCCGTAAGGTTGGTTCTCCTGATGAATGATATATGCCATGCGTTGTTGTATTGAGCTCAGTCAGGAACCCTGTGGATCTTGAAGATTATTCGCCTCCGCCAGAGCTTCTCCAAATTCTCCCTCTGAAGTCCACTATCAGGCCACCGGGATGTGGCCCTCAAATTGGTCCTAACAATTCTAAATTTCTTCCGGTTACTCTCTATTTTCTTTCTGTCTATGTTTCTGTTTACATGTGGGTGTGTGTTTATAATTTGATTTTCTTGATATAAGAGAAGGATATGAAGGTGATAATCGAAATTACCTATTTTGCAGGGCATGCAAGCTCTATTGGATTTAATTTACACACTTGATGGTTCTATATCAGACACAGCTAAGTATATAGGGTATGTTTGCTATTCATTCATGTGTTGGCTTTTGTTTCTTATTACTTTATTTCCACCATAACTAAGCATCCACAGTCGAACGTAGAGGATGGGAGTGGTTCAATTCTGTGAGGAGATTGGGATTTTATCAAGAAACTAAGAGAGCTGATGTACGGATGTTTGTGGTTTATAGGAGTGAATAAGAATTATAATTTTCTCATGGGCATGAGGGAAAGGAGTTAAGACCTCCGGAAGGTGCTGGAGGATATTTTTCATACGAAGTGTCTTGTTTGTTGGAGTCTAAGTCTTGCCTTATGATTTGAAGTAATAGCCTAAGCCCACCACTAGTAGATATTGTCCTCTTTGGGCTTTCCCTTTCGAGCTTCCCCTCAAGGTTTTTAAAACGTATCTGCCAGGGAGAGGTTTTCACACTCTTATAAAGGGAGTTTCGTTCTCCTCGCCTACTGAGGAAGTGGACCAAATTTGGTTTTTGAGAGAGCTTTTGAGTTTGGTAACTGGTTATGATGGTTGTTCATCATTTTCTATTAACATACTTTGGATTATATTAAAATTAATTGAGAGTTATTTCTGAATTTGACAAGATAGATGTCAACTTGACCATCGATGGAAATTATATTCGTTTCATACCCGAAGGACTTAACTTATTGGAATAGCAACTGTAGAACGATTAATCTTTATTTTATGGGAATGTCAGCTACATATTGAATATTTTCTCATTGACATTCCATCATTGGCACTATTTTTAGCTGTCAACATAGATGATATTAAAAGATGATCCGTAGTTAAGATATAAACCTGGTTTCCACTATTTCAAAAAGAGATAAACGTGTGACAGTGTTAATATTAATAGCAAAGTGATAGATATGTACGAGACATTAAGCATAAGTAGTCCGATTAATTGATGCAGGTGGAACAGTTGAATTACAATTTAGATAAATAGTTAAAAGATAAATCTTATGTTTCCCGTTTCTAATATGTTAATGATATAGATTAGCTGCACGCTAATAGTTCTATTAATCTTGAATATTTTAGGTTAACCACTGGTGCTGTATCAAGGTTAATCCTATCCGACGATTCTCTTAGAATGGCTGTAAATGATATCAGGATATCCAAGGTAACACCATCCTATTTTTGAGAAACTATGTCGCATCTCTGCATAATTATTTAATTTCCTTTTATGAAAGTTGGTTTCTTATCGAAAACATTATTTCTTTACTAAATTGTGCTTGAGAAGTCAAATTCTTGGAATATTTAGTGTGATCATGTTCCTTCCGATTTATCGGATGTTCCCGAAGGGACAATCTGTTTTCATGTTTTGAAATGTTAACGGTAAATGTCAGCTTGTTGAGAGAGCCAGCTTGGTAATTTTAATTTGTAAGCATCATAATACATAGCTAATTAATTATGTGGCATCCACTTCAAAACTCAATATAGAAGTGGTAACTTATTTTGCTTCTGTAAGTCGTCCTGCATCTCTGGTTCTAACCCTACATGCCAGACTAGAGAAAGGTGGTAGTTGTCTTTTGCAAAACTTTTGGCTGCTTGGCTCAAATTAAATGTCTACAGGTGTTATTGTTCTATTAGTATAGTTATATTTTCCGTAAATATATTAGTTGTCTTGTCCTTTTTTGTCTTTTTACTTTCTCCGACTTAGGGTAACCTCGTATATAAATCTCTTTAGTGAATGGAATAGAATATTCTAATTCGCTCGAACTTTTAGCATTTACATGATATCAGAGAATTACATCAATTAGTTACTAAAAGAATCTAAGCCAAAAGGACTTTAGACCCCCCATGCTCTCCACTCTCTCCTCCTTTCCAACCCCAATCCTTCATTATTCAAGATAAGTTTCTTCATCTCATTTAGCTATTATTAAGATCAGTTTGTAAGTATGGTGTTGAGTAGTACTTCTGCCATGAAAGAGAGAAGTTGTTGTGTCAATAATAAGTACTTCACAGCCTATGGTTCAAAGATAAGTTTTTTATCAAAGAATGAAGAGCAATTTGTCTATACATACCCTTATCCCATCTTTGTTGGTTTGAAAGTTCACTTGATGATCTTTTGCAACTTCTGATGTCGATGCATTTCTTAAAACAATTCCGAGACAGCAGTGGTACAATCTGTCAGTTGAAACTTTGAGTGCATTATCTGGCTTCCTTCCGGAGGAAGAAAGGATGACTTATTTTCTAGGAGATGATTAAGGACTTTCATGTGTATTATGAAGTTAGCATCAATATTTCGAATCAGACAGCAGCTAAAAAAATCAAGTCTCCTACCAATAGATATGCATGTGTTGCGATGAAGTTCTCATATGGAAAGCAAACAATAAAGCTGGCTCTAAACTGTAACTAGCTTCTCCAAGATCTTCACCTCTGTGGGAATGAATTTTTGGTTGCAAAAGAAAAGGAAGTGGCTAGTGTTGATTGGAGTTCTTTTATGGTAATATCACGTTTAAATCCCCATGATGATTGAAATGATATCAAAAAGGCAATTGAAAAAAAAAAAAAAGAAAAAATAGGCTACTTTTGTGATAAATCCGTTCATGGCTGATTAGGCTCTTTGCAAATGGAAGATGGCATGCGTTTAGGTGGTTCTTGGGACATAAGGAAAATTGATGAATTGAAATCCTTTTCATATCAAGTTTGAATATTGGTCTTTCAAGAAGCATAGGAAGTCAGAATTTAGGGTGGGTTATGGATGAACTTTCATGATACCAATTGATAATTCGGTGACGATTCATGATAATAGTCGAAAGGTTGATTCCCAAACACTACTCATTGTGCTATTAGTAACCTTCCCACTTATTCTCTCTCTCTCTCTCTCTGTTCATTATTCCAAGCAAAGTGTACAAAATAGTAGACAGGCTCTACAAGAAACTTCTCTGACAAGGGAGCAAACTGGGTTGAGTTTTCACCTTGTTATATGGGATAAGCTTCTCCATCCCATTGAAAAATGTCGTCTAGGGTCGTTTCCCTTTGAAGGAAAAGAACAAAGCTCGGACAGCAAAGTGGACTTAAAGATATTATCATGAGAGATGCCCTATGGAGGAAGCTTATATGGTGTAAATATGGGACACTCTCTGCCGCTCCCCATCCATCGACCGTTTCTGCAACAAGACCATGGCAAGCCTTGAAAAGGCAGAAATATTTTGTTGCTAGTTGTATTCGCGACCTTGTAGGCGACAAGGCCCATACTTTGTTTGGGAACGACCTTTGGTTATCGAATATAAGATTGGCTAGCAAGTTTCCTCCTCTATAGACTCGCTAGGCGAAAATTGATTACTGTAAAGGAGACCTGAGAACCGGACAGAAGCCTTTGGAACCTTCACTTTGGTAGAAATCTCAAAGATGAAGATGCTTGTGAATGGCCGGAATTGATTAATATGCAGCAGCAGTTTACTCTTTTTCTTGGCAATGAATGGCCAACCCAAATGGGTTTTATACATCAAAATCTCTGTATTGACATATTTTTCATATTTTTGAATAGGGTATCATAAATATATAATGAATTTTGAAATTTACAGGGTATGAAGCCACTGAAGTAGAAAAGGGGAAGCTCAAGGACTGTATCGGGTGGTGGGTACTCCATGAAGCAACCTCATTTCCGGAGATTCATCGTTGAGTTGAAAAGATGTAAGTTTCTTGTATTTATATTGATATTAGATGCGATTTGATGATAATGAGGAAATATGAAATTTTTATGAGAGGACTAAGATGGTGTATGTAATTAAAGCATCAATCAATCTCTGCCGAAACACATTCCTATTACTACACACTATCTTAAAGTGTGGAGAAAACTCCTGTTTCTTGCAAATCTCAAGTTTTTGGTGCTTTCCAGACATGGAACATTCATTTTTTTACCATGCTAAAGTTTATAGATTATTATCCTGAACATTCAATTCACCGAACGAGATAACACATGTTTTTACTTACTTCTCTACAGATA

mRNA sequence

TTCATTTTGATCGAAAACCCACACAGAAGCTGCAACATGAAAAATCGGGAGTCCATGGCATATCTCTCATAGCAGGAAGCCATGATTTTCCACATCAGTGACTTCAAGCCACAACTTGTTCGTAACCATGATTAAAAACGACCCAATTTTGAAAACCACATTATCGTTGTGAAAAAACAAAACCCAATAGGAGAAATTCGTTTTGTGAATTGCGAAAATGGCAACCGCAAATATGCTCTGGAAATCCGCCAAGATTCTTAGTATTCCTGTTCCAATAGCAAGCAACGGTAGATGGGGAAGGATTGGCTGTACATTTCGAATTCACCAATTCGAGGGCTCTTTCTTCTCCAACTCACTGCGTTCCAATTGCAGCTCTAGCAGTGCAAATTCAATATGGAAAGGAAAAGAGTATTTGATTTTGTCCGACGAAGAGCTGATGAGACAGTGCGAAATGGACACGTTTAAGGCCTCAGGTCCCGGTGGTCAGCACCGCAACAAGCGCGAGTCCGCTGTCCGTTTGAAGCACATTCCCACTGGTATCACTGCTCAGGCTGTCGAGGATCGATCACAGCATAAGAATCGAGCGAGTGCTTTAGCTCGCCTACGCGCTCAATTGGCCCTAAAAGTCAGGAACCCTGTGGATCTTGAAGATTATTCGCCTCCGCCAGAGCTTCTCCAAATTCTCCCTCTGAAGTCCACTATCAGGCCACCGGGATGTGGCCCTCAAATTGGTCCTAACAATTCTAAATTTCTTCCGGGCATGCAAGCTCTATTGGATTTAATTTACACACTTGATGGTTCTATATCAGACACAGCTAAGTATATAGGGTTAACCACTGGTGCTGTATCAAGGTTAATCCTATCCGACGATTCTCTTAGAATGGCTGTAAATGATATCAGGATATCCAAGGGTATGAAGCCACTGAAGTAGAAAAGGGGAAGCTCAAGGACTGTATCGGGTGGTGGGTACTCCATGAAGCAACCTCATTTCCGGAGATTCATCGTTGAGTTGAAAAGATGTAAGTTTCTTGTATTTATATTGATATTAGATGCGATTTGATGATAATGAGGAAATATGAAATTTTTATGAGAGGACTAAGATGGTGTATGTAATTAAAGCATCAATCAATCTCTGCCGAAACACATTCCTATTACTACACACTATCTTAAAGTGTGGAGAAAACTCCTGTTTCTTGCAAATCTCAAGTTTTTGGTGCTTTCCAGACATGGAACATTCATTTTTTTACCATGCTAAAGTTTATAGATTATTATCCTGAACATTCAATTCACCGAACGAGATAACACATGTTTTTACTTACTTCTCTACAGATA

Coding sequence (CDS)

ATGGCAACCGCAAATATGCTCTGGAAATCCGCCAAGATTCTTAGTATTCCTGTTCCAATAGCAAGCAACGGTAGATGGGGAAGGATTGGCTGTACATTTCGAATTCACCAATTCGAGGGCTCTTTCTTCTCCAACTCACTGCGTTCCAATTGCAGCTCTAGCAGTGCAAATTCAATATGGAAAGGAAAAGAGTATTTGATTTTGTCCGACGAAGAGCTGATGAGACAGTGCGAAATGGACACGTTTAAGGCCTCAGGTCCCGGTGGTCAGCACCGCAACAAGCGCGAGTCCGCTGTCCGTTTGAAGCACATTCCCACTGGTATCACTGCTCAGGCTGTCGAGGATCGATCACAGCATAAGAATCGAGCGAGTGCTTTAGCTCGCCTACGCGCTCAATTGGCCCTAAAAGTCAGGAACCCTGTGGATCTTGAAGATTATTCGCCTCCGCCAGAGCTTCTCCAAATTCTCCCTCTGAAGTCCACTATCAGGCCACCGGGATGTGGCCCTCAAATTGGTCCTAACAATTCTAAATTTCTTCCGGGCATGCAAGCTCTATTGGATTTAATTTACACACTTGATGGTTCTATATCAGACACAGCTAAGTATATAGGGTTAACCACTGGTGCTGTATCAAGGTTAATCCTATCCGACGATTCTCTTAGAATGGCTGTAAATGATATCAGGATATCCAAGGGTATGAAGCCACTGAAGTAG

Protein sequence

MATANMLWKSAKILSIPVPIASNGRWGRIGCTFRIHQFEGSFFSNSLRSNCSSSSANSIWKGKEYLILSDEELMRQCEMDTFKASGPGGQHRNKRESAVRLKHIPTGITAQAVEDRSQHKNRASALARLRAQLALKVRNPVDLEDYSPPPELLQILPLKSTIRPPGCGPQIGPNNSKFLPGMQALLDLIYTLDGSISDTAKYIGLTTGAVSRLILSDDSLRMAVNDIRISKGMKPLK

Homology

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BLAST of Carg27119-RA vs. NCBI nr
Match: XP_023523846.1 (uncharacterized protein LOC111787964 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 471.5 bits (1212), Expect = 1.7e-129
Identity = 235/237 (99.16%), Postives = 237/237 (100.00%), Query Frame = 0


Query: 1   MATANMLWKSAKILSIPVPIASNGRWGRIGCTFRIHQFEGSFFSNSLRSNCSSSSANSIW 60
           MATANMLWKSAKILSIPVPIASNGRWGRIGCTFRIHQFEGSFFSNSLRSNCSSSSANS+W
Sbjct: 1   MATANMLWKSAKILSIPVPIASNGRWGRIGCTFRIHQFEGSFFSNSLRSNCSSSSANSVW 60

Query: 61  KGKEYLILSDEELMRQCEMDTFKASGPGGQHRNKRESAVRLKHIPTGITAQAVEDRSQHK 120
           KGKEYL+LSDEELMRQCEMDTFKASGPGGQHRNKRESAVRLKHIPTGITAQAVEDRSQHK
Sbjct: 61  KGKEYLVLSDEELMRQCEMDTFKASGPGGQHRNKRESAVRLKHIPTGITAQAVEDRSQHK 120

Query: 121 NRASALARLRAQLALKVRNPVDLEDYSPPPELLQILPLKSTIRPPGCGPQIGPNNSKFLP 180
           NRASALARLRAQLALKVRNPVDLEDYSPPPELLQILPLKSTIRPPGCGPQIGPNNSKFLP
Sbjct: 121 NRASALARLRAQLALKVRNPVDLEDYSPPPELLQILPLKSTIRPPGCGPQIGPNNSKFLP 180

Query: 181 GMQALLDLIYTLDGSISDTAKYIGLTTGAVSRLILSDDSLRMAVNDIRISKGMKPLK 238
           GMQALLDLIYTLDGSISDTAKYIGLTTGAVSRLILSDDSLRMAVNDIRISKGMKPLK
Sbjct: 181 GMQALLDLIYTLDGSISDTAKYIGLTTGAVSRLILSDDSLRMAVNDIRISKGMKPLK 237

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BLAST of Carg27119-RA vs. NCBI nr
Match: XP_022932469.1 (uncharacterized protein LOC111438876 [Cucurbita moschata])

HSP 1 Score: 469.5 bits (1207), Expect = 6.5e-129
Identity = 235/237 (99.16%), Postives = 236/237 (99.58%), Query Frame = 0


Query: 1   MATANMLWKSAKILSIPVPIASNGRWGRIGCTFRIHQFEGSFFSNSLRSNCSSSSANSIW 60
           MATANMLWKSAKILSIPVPIASNGRWGRIGCTFRIHQFEGSFFSNSLRS CSSSSANS+W
Sbjct: 1   MATANMLWKSAKILSIPVPIASNGRWGRIGCTFRIHQFEGSFFSNSLRSTCSSSSANSVW 60

Query: 61  KGKEYLILSDEELMRQCEMDTFKASGPGGQHRNKRESAVRLKHIPTGITAQAVEDRSQHK 120
           KGKEYLILSDEELMRQCEMDTFKASGPGGQHRNKRESAVRLKHIPTGITAQAVEDRSQHK
Sbjct: 61  KGKEYLILSDEELMRQCEMDTFKASGPGGQHRNKRESAVRLKHIPTGITAQAVEDRSQHK 120

Query: 121 NRASALARLRAQLALKVRNPVDLEDYSPPPELLQILPLKSTIRPPGCGPQIGPNNSKFLP 180
           NRASALARLRAQLALKVRNPVDLEDYSPPPELLQILPLKSTIRPPGCGPQIGPNNSKFLP
Sbjct: 121 NRASALARLRAQLALKVRNPVDLEDYSPPPELLQILPLKSTIRPPGCGPQIGPNNSKFLP 180

Query: 181 GMQALLDLIYTLDGSISDTAKYIGLTTGAVSRLILSDDSLRMAVNDIRISKGMKPLK 238
           GMQALLDLIYTLDGSISDTAKYIGLTTGAVSRLILSDDSLRMAVNDIRISKGMKPLK
Sbjct: 181 GMQALLDLIYTLDGSISDTAKYIGLTTGAVSRLILSDDSLRMAVNDIRISKGMKPLK 237

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BLAST of Carg27119-RA vs. NCBI nr
Match: XP_022973451.1 (uncharacterized protein LOC111471993 [Cucurbita maxima])

HSP 1 Score: 463.8 bits (1192), Expect = 3.6e-127
Identity = 232/237 (97.89%), Postives = 235/237 (99.16%), Query Frame = 0


Query: 1   MATANMLWKSAKILSIPVPIASNGRWGRIGCTFRIHQFEGSFFSNSLRSNCSSSSANSIW 60
           MAT NMLWKSAKILSIPVPIASNGRWGRIGCTFRIHQFEGSFFSNSLRSNCSSSSA S+W
Sbjct: 1   MATTNMLWKSAKILSIPVPIASNGRWGRIGCTFRIHQFEGSFFSNSLRSNCSSSSAISVW 60

Query: 61  KGKEYLILSDEELMRQCEMDTFKASGPGGQHRNKRESAVRLKHIPTGITAQAVEDRSQHK 120
           KGKEYLILSDEELMRQCEMDTFKASGPGGQHRNKRESAVRLKHIPTGITAQAVEDRSQHK
Sbjct: 61  KGKEYLILSDEELMRQCEMDTFKASGPGGQHRNKRESAVRLKHIPTGITAQAVEDRSQHK 120

Query: 121 NRASALARLRAQLALKVRNPVDLEDYSPPPELLQILPLKSTIRPPGCGPQIGPNNSKFLP 180
           NRASALARLRAQLALKVRNPV+LEDYSPPPELLQILPLKSTIRPPGCGPQIGPNNSKFLP
Sbjct: 121 NRASALARLRAQLALKVRNPVNLEDYSPPPELLQILPLKSTIRPPGCGPQIGPNNSKFLP 180

Query: 181 GMQALLDLIYTLDGSISDTAKYIGLTTGAVSRLILSDDSLRMAVNDIRISKGMKPLK 238
           GMQ+LLDLIYTLDGSISDTAKYIGLTTGAVSRLILSDDSLRMAVNDIRISKGMKPLK
Sbjct: 181 GMQSLLDLIYTLDGSISDTAKYIGLTTGAVSRLILSDDSLRMAVNDIRISKGMKPLK 237

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BLAST of Carg27119-RA vs. NCBI nr
Match: XP_008459491.1 (PREDICTED: uncharacterized protein LOC103498609 isoform X1 [Cucumis melo])

HSP 1 Score: 395.6 bits (1015), Expect = 1.2e-106
Identity = 203/240 (84.58%), Postives = 214/240 (89.17%), Query Frame = 0


Query: 1   MATANMLWKSAKILSIPVPIASNGRWGRIGCTFRI--HQFEGS-FFSNSLRSNCSSSSAN 60
           MA ANMLW SAKIL  P PIASN RW R G  FR   H FEGS FF NSLR NCSSS+AN
Sbjct: 1   MANANMLWNSAKILGFPAPIASNVRWARFGYKFRFRHHPFEGSFFFFNSLRFNCSSSNAN 60

Query: 61  SIWKGKEYLILSDEELMRQCEMDTFKASGPGGQHRNKRESAVRLKHIPTGITAQAVEDRS 120
           S+  GKEYL+LSDEELM+QCEM TFKASGPGGQHRNKRESAVRLKHIPTGI AQAVEDRS
Sbjct: 61  SVCSGKEYLVLSDEELMKQCEMGTFKASGPGGQHRNKRESAVRLKHIPTGIIAQAVEDRS 120

Query: 121 QHKNRASALARLRAQLALKVRNPVDLEDYSPPPELLQILPLKSTIRPPGCGPQIGPNNSK 180
           QHKNR+SALARLRA LALKVRNPVDLEDYSPPPELLQILP KST+RPP CGPQIGPNNSK
Sbjct: 121 QHKNRSSALARLRALLALKVRNPVDLEDYSPPPELLQILPPKSTVRPPECGPQIGPNNSK 180

Query: 181 FLPGMQALLDLIYTLDGSISDTAKYIGLTTGAVSRLILSDDSLRMAVNDIRISKGMKPLK 238
           FLPGMQALLDLI TLDGS+SDTAK +GLTTGA+SRLILSDD+LRMAVNDIR+SKGMKPLK
Sbjct: 181 FLPGMQALLDLISTLDGSVSDTAKLLGLTTGALSRLILSDDALRMAVNDIRMSKGMKPLK 240

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BLAST of Carg27119-RA vs. NCBI nr
Match: XP_004141513.1 (PREDICTED: uncharacterized protein LOC101217430 [Cucumis sativus] >KGN52594.1 hypothetical protein Csa_5G646680 [Cucumis sativus])

HSP 1 Score: 392.9 bits (1008), Expect = 7.8e-106
Identity = 201/240 (83.75%), Postives = 215/240 (89.58%), Query Frame = 0


Query: 1   MATANMLWKSAKILSIPVPIASNGRWGRIGCTFRIHQ--FEGS-FFSNSLRSNCSSSSAN 60
           MA ANMLW SAKIL  P PIASN RW R   TFR+    FEGS FF NSLR NCSSS+AN
Sbjct: 1   MANANMLWSSAKILGFPSPIASNVRWARFDYTFRLRHRPFEGSFFFFNSLRFNCSSSNAN 60

Query: 61  SIWKGKEYLILSDEELMRQCEMDTFKASGPGGQHRNKRESAVRLKHIPTGITAQAVEDRS 120
           S+  GK+YL+LSDEELM+QCEM TFKASGPGGQHRNKRESAVRLKHIPTGI AQAVEDRS
Sbjct: 61  SVCNGKQYLVLSDEELMKQCEMGTFKASGPGGQHRNKRESAVRLKHIPTGIIAQAVEDRS 120

Query: 121 QHKNRASALARLRAQLALKVRNPVDLEDYSPPPELLQILPLKSTIRPPGCGPQIGPNNSK 180
           QHKNR+SALARLRA LALKVRNPVDLEDYSPPPELLQILPLKST+RPP CGPQIGPNNSK
Sbjct: 121 QHKNRSSALARLRALLALKVRNPVDLEDYSPPPELLQILPLKSTVRPPECGPQIGPNNSK 180

Query: 181 FLPGMQALLDLIYTLDGSISDTAKYIGLTTGAVSRLILSDDSLRMAVNDIRISKGMKPLK 238
           FLPGMQALLDLI TLDGS+SDTAK +GLTTGA+SRLILSDD+LRMAVNDIR+SKG+KPLK
Sbjct: 181 FLPGMQALLDLISTLDGSVSDTAKLLGLTTGALSRLILSDDALRMAVNDIRMSKGLKPLK 240

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BLAST of Carg27119-RA vs. TAIR10
Match: AT1G33330.1 (Class I peptide chain release factor)

HSP 1 Score: 252.3 bits (643), Expect = 3.0e-67
Identity = 141/242 (58.26%), Postives = 172/242 (71.07%), Query Frame = 0


Query: 6   MLWKSAKILSIPVPI-------ASNGRWGRIGCTFRIHQFEGSFFSNS---LRSNCSSSS 65
           +L +S  +LS P  +        S+G   R+    R    +G    +S     ++  S S
Sbjct: 17  LLRRSIPLLSAPTSVIYNHRTLLSDGLSTRLCSILRYSSSDGVNGGSSGGDFGNDNDSVS 76

Query: 66  ANSIWKGKEYLILSDEELMRQCEMDTFKASGPGGQHRNKRESAVRLKHIPTGITAQAVED 125
             S  +   YL  +DEELM+QC ++TF+ SGPGGQHRNKR+SAVRLKH+PTGI AQAVED
Sbjct: 77  VVSDVQSPNYLKFTDEELMKQCRLETFRVSGPGGQHRNKRDSAVRLKHLPTGIVAQAVED 136

Query: 126 RSQHKNRASALARLRAQLALKVRNPVDLEDYSPPPELLQILPLKSTIRPPGCGPQIGPNN 185
           RSQHKNRASAL RLR  LA+KVRN VD+E Y+PPPELLQILP KSTIR    G QIGPNN
Sbjct: 137 RSQHKNRASALNRLRTLLAIKVRNKVDIEAYAPPPELLQILPPKSTIR-TSSGSQIGPNN 196

Query: 186 SKFLPGMQALLDLIYTLDGSISDTAKYIGLTTGAVSRLILSDDSLRMAVNDIRISKGMKP 238
            KF+PGMQALLD+I   DGSI+D+AK +GL+TG +SRLILS D LRMAVN +R +KG+KP
Sbjct: 197 PKFVPGMQALLDVISASDGSIADSAKLLGLSTGGLSRLILSHDGLRMAVNSMRAAKGIKP 256

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BLAST of Carg27119-RA vs. TAIR10
Match: AT1G56350.1 (Peptide chain release factor 2)

HSP 1 Score: 65.9 bits (159), Expect = 3.9e-11
Identity = 33/72 (45.83%), Postives = 49/72 (68.06%), Query Frame = 0


Query: 62  GKEYLILSDEELMRQCEMDTFKASGPGGQHRNKRESAVRLKHIPTGITAQAVEDRSQHKN 121
           G   + ++D +L     ++ F++ G GGQH N  +SAVR+ HIPTGITA    +RSQH N
Sbjct: 337 GSTRVEINDSDL----RIERFRSGGAGGQHANTTDSAVRIVHIPTGITATCQNERSQHSN 396

Query: 122 RASALARLRAQL 134
           +ASA+A L+++L
Sbjct: 397 KASAMAVLQSRL 404

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BLAST of Carg27119-RA vs. TAIR10
Match: AT2G47020.1 (Peptide chain release factor 1)

HSP 1 Score: 59.7 bits (143), Expect = 2.8e-09
Identity = 28/55 (50.91%), Postives = 38/55 (69.09%), Query Frame = 0


Query: 79  MDTFKASGPGGQHRNKRESAVRLKHIPTGITAQAVEDRSQHKNRASALARLRAQL 134
           +DT+++ G GGQH N   SAVR+ H+PTG+     ++RSQH NRA AL  L A+L
Sbjct: 276 IDTYRSGGSGGQHANTTNSAVRIIHLPTGMMVSIQDERSQHMNRAKALKVLCARL 330

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BLAST of Carg27119-RA vs. TAIR10
Match: AT5G36170.1 (high chlorophyll fluorescent 109)

HSP 1 Score: 56.6 bits (135), Expect = 2.4e-08
Identity = 27/51 (52.94%), Postives = 37/51 (72.55%), Query Frame = 0


Query: 83  KASGPGGQHRNKRESAVRLKHIPTGITAQAVEDRSQHKNRASALARLRAQL 134
           +A G GGQ+ NK E+AVR+ HIPTG+  +  E+RSQ  N+  AL RL+A+L
Sbjct: 325 RAGGKGGQNVNKVETAVRITHIPTGVAVRCTEERSQLANKTRALIRLKAKL 375

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BLAST of Carg27119-RA vs. TAIR10
Match: AT3G62910.1 (Peptide chain release factor 1)

HSP 1 Score: 48.1 bits (113), Expect = 8.5e-06
Identity = 27/65 (41.54%), Postives = 42/65 (64.62%), Query Frame = 0


Query: 75  RQCEMDTFKASGPGGQHRNKRESAVRLKHIPTGITAQAVEDRSQHKNRASALARLRAQL- 134
           +  E+ + ++ G GGQ+ NK E+A+ L H P+GI     E+R+Q +N+A A   LRA+L 
Sbjct: 275 KDIELTSARSGGAGGQNVNKVETAIDLFHKPSGIRIFCTEERTQIRNKARAFQLLRAKLY 334

Query: 135 ALKVR 139
            +KVR
Sbjct: 335 EIKVR 339

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BLAST of Carg27119-RA vs. Swiss-Prot
Match: sp|A7ZE19|RF2_CAMC1 (Peptide chain release factor 2 OS=Campylobacter concisus (strain 13826) OX=360104 GN=prfB PE=3 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 6.9e-13
Identity = 34/59 (57.63%), Postives = 46/59 (77.97%), Query Frame = 0


Query: 75  RQCEMDTFKASGPGGQHRNKRESAVRLKHIPTGITAQAVEDRSQHKNRASALARLRAQL 134
           +  ++DT++ASG GGQH NK ESA+R+ HIPTGI  Q   DRSQHKNRA+A+  L+++L
Sbjct: 236 KDLKIDTYRASGAGGQHVNKTESAIRITHIPTGIVVQCQNDRSQHKNRATAMKMLKSRL 294

[Close]

BLAST of Carg27119-RA vs. Swiss-Prot
Match: sp|B1XYX1|RF1_LEPCP (Peptide chain release factor 1 OS=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) OX=395495 GN=prfA PE=3 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 9.0e-13
Identity = 37/78 (47.44%), Postives = 54/78 (69.23%), Query Frame = 0


Query: 76  QCEMDTFKASGPGGQHRNKRESAVRLKHIPTGITAQAVEDRSQHKNRASALARLRAQLAL 135
           +  +DT++ASG GGQH NK +SAVR+ H+PTG+ A+  +DRSQH+N+A ALA L A+L  
Sbjct: 221 ELRIDTYRASGAGGQHINKTDSAVRVTHLPTGLVAECQDDRSQHRNKARALAVLAARLRD 280

Query: 136 KVRNPVDLEDYSPPPELL 154
           +VR     +D +    L+
Sbjct: 281 RVRQEQAAKDAAARKSLI 298

[Close]

BLAST of Carg27119-RA vs. Swiss-Prot
Match: sp|A5WFG1|RF1_PSYWF (Peptide chain release factor 1 OS=Psychrobacter sp. (strain PRwf-1) OX=349106 GN=prfA PE=3 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.2e-12
Identity = 38/68 (55.88%), Postives = 49/68 (72.06%), Query Frame = 0


Query: 79  MDTFKASGPGGQHRNKRESAVRLKHIPTGITAQAVEDRSQHKNRASALARLRAQL-ALKV 138
           MDTF++SG GGQH N  +SAVRL HIPTG+ A+  ++RSQHKNRA A+  L A++   KV
Sbjct: 227 MDTFRSSGAGGQHVNTTDSAVRLTHIPTGVVAECQQERSQHKNRAKAMQMLIARIQQAKV 286

Query: 139 RNPVDLED 146
           +  VD  D
Sbjct: 287 QEQVDTAD 294

[Close]

BLAST of Carg27119-RA vs. Swiss-Prot
Match: sp|A6Q582|RF2_NITSB (Peptide chain release factor 2 OS=Nitratiruptor sp. (strain SB155-2) OX=387092 GN=prfB PE=3 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.2e-12
Identity = 34/68 (50.00%), Postives = 51/68 (75.00%), Query Frame = 0


Query: 66  LILSDEELMRQCEMDTFKASGPGGQHRNKRESAVRLKHIPTGITAQAVEDRSQHKNRASA 125
           +++ D+++     +DT++ASG GGQH NK +SA+R+ HIPTGI  Q   DRSQHKNRA+A
Sbjct: 231 IVIEDKDI----RVDTYRASGAGGQHVNKTDSAIRITHIPTGIVVQCQNDRSQHKNRATA 290

Query: 126 LARLRAQL 134
           +  L+++L
Sbjct: 291 MKMLKSRL 294

[Close]

BLAST of Carg27119-RA vs. Swiss-Prot
Match: sp|B1M766|RF1_METRJ (Peptide chain release factor 1 OS=Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831 / NBRC 15690 / NCIMB 10815 / 0-1) OX=426355 GN=prfA PE=3 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.5e-12
Identity = 37/65 (56.92%), Postives = 46/65 (70.77%), Query Frame = 0


Query: 78  EMDTFKASGPGGQHRNKRESAVRLKHIPTGITAQAVEDRSQHKNRASALARLRAQLALKV 137
           ++DT +A G GGQH NK ESA+R+ H+PTGI     E+RSQHKNRA A+A LRA+L    
Sbjct: 224 KIDTMRAQGAGGQHVNKTESAIRITHLPTGIVVFVQEERSQHKNRARAMALLRARLYEAE 283

Query: 138 RNPVD 143
           RN  D
Sbjct: 284 RNAKD 288

[Close]

BLAST of Carg27119-RA vs. TrEMBL
Match: tr|A0A1S3CAA2|A0A1S3CAA2_CUCME (uncharacterized protein LOC103498609 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103498609 PE=4 SV=1)

HSP 1 Score: 395.6 bits (1015), Expect = 7.9e-107
Identity = 203/240 (84.58%), Postives = 214/240 (89.17%), Query Frame = 0


Query: 1   MATANMLWKSAKILSIPVPIASNGRWGRIGCTFRI--HQFEGS-FFSNSLRSNCSSSSAN 60
           MA ANMLW SAKIL  P PIASN RW R G  FR   H FEGS FF NSLR NCSSS+AN
Sbjct: 1   MANANMLWNSAKILGFPAPIASNVRWARFGYKFRFRHHPFEGSFFFFNSLRFNCSSSNAN 60

Query: 61  SIWKGKEYLILSDEELMRQCEMDTFKASGPGGQHRNKRESAVRLKHIPTGITAQAVEDRS 120
           S+  GKEYL+LSDEELM+QCEM TFKASGPGGQHRNKRESAVRLKHIPTGI AQAVEDRS
Sbjct: 61  SVCSGKEYLVLSDEELMKQCEMGTFKASGPGGQHRNKRESAVRLKHIPTGIIAQAVEDRS 120

Query: 121 QHKNRASALARLRAQLALKVRNPVDLEDYSPPPELLQILPLKSTIRPPGCGPQIGPNNSK 180
           QHKNR+SALARLRA LALKVRNPVDLEDYSPPPELLQILP KST+RPP CGPQIGPNNSK
Sbjct: 121 QHKNRSSALARLRALLALKVRNPVDLEDYSPPPELLQILPPKSTVRPPECGPQIGPNNSK 180

Query: 181 FLPGMQALLDLIYTLDGSISDTAKYIGLTTGAVSRLILSDDSLRMAVNDIRISKGMKPLK 238
           FLPGMQALLDLI TLDGS+SDTAK +GLTTGA+SRLILSDD+LRMAVNDIR+SKGMKPLK
Sbjct: 181 FLPGMQALLDLISTLDGSVSDTAKLLGLTTGALSRLILSDDALRMAVNDIRMSKGMKPLK 240

[Close]

BLAST of Carg27119-RA vs. TrEMBL
Match: tr|A0A0A0KUM8|A0A0A0KUM8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G646680 PE=4 SV=1)

HSP 1 Score: 392.9 bits (1008), Expect = 5.1e-106
Identity = 201/240 (83.75%), Postives = 215/240 (89.58%), Query Frame = 0


Query: 1   MATANMLWKSAKILSIPVPIASNGRWGRIGCTFRIHQ--FEGS-FFSNSLRSNCSSSSAN 60
           MA ANMLW SAKIL  P PIASN RW R   TFR+    FEGS FF NSLR NCSSS+AN
Sbjct: 1   MANANMLWSSAKILGFPSPIASNVRWARFDYTFRLRHRPFEGSFFFFNSLRFNCSSSNAN 60

Query: 61  SIWKGKEYLILSDEELMRQCEMDTFKASGPGGQHRNKRESAVRLKHIPTGITAQAVEDRS 120
           S+  GK+YL+LSDEELM+QCEM TFKASGPGGQHRNKRESAVRLKHIPTGI AQAVEDRS
Sbjct: 61  SVCNGKQYLVLSDEELMKQCEMGTFKASGPGGQHRNKRESAVRLKHIPTGIIAQAVEDRS 120

Query: 121 QHKNRASALARLRAQLALKVRNPVDLEDYSPPPELLQILPLKSTIRPPGCGPQIGPNNSK 180
           QHKNR+SALARLRA LALKVRNPVDLEDYSPPPELLQILPLKST+RPP CGPQIGPNNSK
Sbjct: 121 QHKNRSSALARLRALLALKVRNPVDLEDYSPPPELLQILPLKSTVRPPECGPQIGPNNSK 180

Query: 181 FLPGMQALLDLIYTLDGSISDTAKYIGLTTGAVSRLILSDDSLRMAVNDIRISKGMKPLK 238
           FLPGMQALLDLI TLDGS+SDTAK +GLTTGA+SRLILSDD+LRMAVNDIR+SKG+KPLK
Sbjct: 181 FLPGMQALLDLISTLDGSVSDTAKLLGLTTGALSRLILSDDALRMAVNDIRMSKGLKPLK 240

[Close]

BLAST of Carg27119-RA vs. TrEMBL
Match: tr|A0A1S3CAT7|A0A1S3CAT7_CUCME (uncharacterized protein LOC103498609 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103498609 PE=4 SV=1)

HSP 1 Score: 357.8 bits (917), Expect = 1.8e-95
Identity = 186/237 (78.48%), Postives = 197/237 (83.12%), Query Frame = 0


Query: 1   MATANMLWKSAKILSIPVPIASNGRWGRIGCTFRIHQFEGSFFSNSLRSNCSSSSANSIW 60
           MA ANMLW SAKIL  P PIASN RW                         SSS+ANS+ 
Sbjct: 1   MANANMLWNSAKILGFPAPIASNVRW------------------------ASSSNANSVC 60

Query: 61  KGKEYLILSDEELMRQCEMDTFKASGPGGQHRNKRESAVRLKHIPTGITAQAVEDRSQHK 120
            GKEYL+LSDEELM+QCEM TFKASGPGGQHRNKRESAVRLKHIPTGI AQAVEDRSQHK
Sbjct: 61  SGKEYLVLSDEELMKQCEMGTFKASGPGGQHRNKRESAVRLKHIPTGIIAQAVEDRSQHK 120

Query: 121 NRASALARLRAQLALKVRNPVDLEDYSPPPELLQILPLKSTIRPPGCGPQIGPNNSKFLP 180
           NR+SALARLRA LALKVRNPVDLEDYSPPPELLQILP KST+RPP CGPQIGPNNSKFLP
Sbjct: 121 NRSSALARLRALLALKVRNPVDLEDYSPPPELLQILPPKSTVRPPECGPQIGPNNSKFLP 180

Query: 181 GMQALLDLIYTLDGSISDTAKYIGLTTGAVSRLILSDDSLRMAVNDIRISKGMKPLK 238
           GMQALLDLI TLDGS+SDTAK +GLTTGA+SRLILSDD+LRMAVNDIR+SKGMKPLK
Sbjct: 181 GMQALLDLISTLDGSVSDTAKLLGLTTGALSRLILSDDALRMAVNDIRMSKGMKPLK 213

[Close]

BLAST of Carg27119-RA vs. TrEMBL
Match: tr|A0A1U8GMF3|A0A1U8GMF3_CAPAN (peptide chain release factor 1 isoform X3 OS=Capsicum annuum OX=4072 GN=LOC107867946 PE=4 SV=1)

HSP 1 Score: 285.8 bits (730), Expect = 8.8e-74
Identity = 148/203 (72.91%), Postives = 172/203 (84.73%), Query Frame = 0


Query: 37  QFE--GSFFSNSLRSNCSSSSANSIWKGKEYLILSDEELMRQCEMDTFKASGPGGQHRNK 96
           QFE  GS   ++   N S+ S ++   GKEYL++SDEELMRQCEM TFKASGPGGQHRNK
Sbjct: 49  QFEEFGSAKYSTSAFNKSNGSVDTGTGGKEYLLMSDEELMRQCEMSTFKASGPGGQHRNK 108

Query: 97  RESAVRLKHIPTGITAQAVEDRSQHKNRASALARLRAQLALKVRNPVDLEDYSPPPELLQ 156
           RESAVRLKH PTGI +QAVEDRSQH NRASAL+RLRA LALKVRN +DLE Y+PP ELLQ
Sbjct: 109 RESAVRLKHNPTGIVSQAVEDRSQHMNRASALSRLRALLALKVRNNLDLETYTPPQELLQ 168

Query: 157 ILPLKSTIRPPGCGPQIGPNNSKFLPGMQALLDLIYTLDGSISDTAKYIGLTTGAVSRLI 216
           ILP KSTIR   CGPQIGPNNSKF+ GMQALLDL++ ++GS+SD AK +GL+TGA+SRL+
Sbjct: 169 ILPAKSTIRGSNCGPQIGPNNSKFVLGMQALLDLLFAVEGSVSDAAKKLGLSTGALSRLL 228

Query: 217 LSDDSLRMAVNDIRISKGMKPLK 238
           LSDD+LRMAVN+ R+SKGMKPLK
Sbjct: 229 LSDDNLRMAVNEFRVSKGMKPLK 251

[Close]

BLAST of Carg27119-RA vs. TrEMBL
Match: tr|A0A199VA37|A0A199VA37_ANACO (Peptide chain release factor 2 OS=Ananas comosus OX=4615 GN=ACMD2_01298 PE=4 SV=1)

HSP 1 Score: 283.9 bits (725), Expect = 3.4e-73
Identity = 144/194 (74.23%), Postives = 164/194 (84.54%), Query Frame = 0


Query: 44  SNSLRSNCSSSSANSIWKGKEYLILSDEELMRQCEMDTFKASGPGGQHRNKRESAVRLKH 103
           S S     +SSS++S +KG  YL L+DEEL+ QCEMDT+KASGPGGQHRNKRESAVRLKH
Sbjct: 28  SRSQTLTLASSSSSSTYKGGNYLTLTDEELVAQCEMDTYKASGPGGQHRNKRESAVRLKH 87

Query: 104 IPTGITAQAVEDRSQHKNRASALARLRAQLALKVRNPVDLEDYSPPPELLQILPLKSTIR 163
           +PTG+ AQAVEDRSQHKNRASALARLR  LALKVRN VDL  Y+PPPELLQILP KSTIR
Sbjct: 88  LPTGVVAQAVEDRSQHKNRASALARLRTLLALKVRNAVDLNGYTPPPELLQILPAKSTIR 147

Query: 164 PPGCGPQIGPNNSKFLPGMQALLDLIYTLDGSISDTAKYIGLTTGAVSRLILSDDSLRMA 223
               GPQIGPNN KF  GMQALLDLIY ++GS+S+ A  +GL+TGA+SRLILSDDSLRMA
Sbjct: 148 GSDVGPQIGPNNPKFAMGMQALLDLIYAVEGSVSEAANLLGLSTGALSRLILSDDSLRMA 207

Query: 224 VNDIRISKGMKPLK 238
           VN++R SKGM+PLK
Sbjct: 208 VNELRASKGMRPLK 221

The following BLAST results are available for this feature:

BLAST of Carg27119-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023523846.1	1.7e-129	99.16	uncharacterized protein LOC111787964 [Cucurbita pepo subsp. pepo]	[more]
XP_022932469.1	6.5e-129	99.16	uncharacterized protein LOC111438876 [Cucurbita moschata]	[more]
XP_022973451.1	3.6e-127	97.89	uncharacterized protein LOC111471993 [Cucurbita maxima]	[more]
XP_008459491.1	1.2e-106	84.58	PREDICTED: uncharacterized protein LOC103498609 isoform X1 [Cucumis melo]	[more]
XP_004141513.1	7.8e-106	83.75	PREDICTED: uncharacterized protein LOC101217430 [Cucumis sativus] >KGN52594.1 hy...	[more]

BLAST of Carg27119-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT1G33330.1	3.0e-67	58.26	Class I peptide chain release factor	[more]
AT1G56350.1	3.9e-11	45.83	Peptide chain release factor 2	[more]
AT2G47020.1	2.8e-09	50.91	Peptide chain release factor 1	[more]
AT5G36170.1	2.4e-08	52.94	high chlorophyll fluorescent 109	[more]
AT3G62910.1	8.5e-06	41.54	Peptide chain release factor 1	[more]

BLAST of Carg27119-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|A7ZE19\|RF2_CAMC1	6.9e-13	57.63	Peptide chain release factor 2 OS=Campylobacter concisus (strain 13826) OX=36010...	[more]
sp\|B1XYX1\|RF1_LEPCP	9.0e-13	47.44	Peptide chain release factor 1 OS=Leptothrix cholodnii (strain ATCC 51168 / LMG ...	[more]
sp\|A5WFG1\|RF1_PSYWF	1.2e-12	55.88	Peptide chain release factor 1 OS=Psychrobacter sp. (strain PRwf-1) OX=349106 GN...	[more]
sp\|A6Q582\|RF2_NITSB	1.2e-12	50.00	Peptide chain release factor 2 OS=Nitratiruptor sp. (strain SB155-2) OX=387092 G...	[more]
sp\|B1M766\|RF1_METRJ	1.5e-12	56.92	Peptide chain release factor 1 OS=Methylobacterium radiotolerans (strain ATCC 27...	[more]

BLAST of Carg27119-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CAA2\|A0A1S3CAA2_CUCME	7.9e-107	84.58	uncharacterized protein LOC103498609 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A0A0KUM8\|A0A0A0KUM8_CUCSA	5.1e-106	83.75	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G646680 PE=4 SV=1	[more]
tr\|A0A1S3CAT7\|A0A1S3CAT7_CUCME	1.8e-95	78.48	uncharacterized protein LOC103498609 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A1U8GMF3\|A0A1U8GMF3_CAPAN	8.8e-74	72.91	peptide chain release factor 1 isoform X3 OS=Capsicum annuum OX=4072 GN=LOC10786...	[more]
tr\|A0A199VA37\|A0A199VA37_ANACO	3.4e-73	74.23	Peptide chain release factor 2 OS=Ananas comosus OX=4615 GN=ACMD2_01298 PE=4 SV=...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Biological Process**
Term	Definition
GO:0006415	translational termination

Vocabulary: **Molecular Function**
Term	Definition
GO:0003747	translation release factor activity

Vocabulary: **INTERPRO**
Term	Definition
IPR000352	Pep_chain_release_fac_I_II

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006415	translational termination
biological_process	GO:0051083	'de novo' cotranslational protein folding
biological_process	GO:0006449	regulation of translational termination
cellular_component	GO:0005840	ribosome
cellular_component	GO:0018444	translation release factor complex
molecular_function	GO:0003747	translation release factor activity

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg27119	Carg27119	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg27119-RA.exon.1	Carg27119-RA.exon.1	exon
Carg27119-RA.exon.2	Carg27119-RA.exon.2	exon
Carg27119-RA.exon.3	Carg27119-RA.exon.3	exon
Carg27119-RA.exon.4	Carg27119-RA.exon.4	exon
Carg27119-RA.exon.5	Carg27119-RA.exon.5	exon
Carg27119-RA.exon.6	Carg27119-RA.exon.6	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg27119-RA.five_prime_UTR.1	Carg27119-RA.five_prime_UTR.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg27119-RA.CDS.1	Carg27119-RA.CDS.1	CDS
Carg27119-RA.CDS.2	Carg27119-RA.CDS.2	CDS
Carg27119-RA.CDS.3	Carg27119-RA.CDS.3	CDS
Carg27119-RA.CDS.4	Carg27119-RA.CDS.4	CDS
Carg27119-RA.CDS.5	Carg27119-RA.CDS.5	CDS
Carg27119-RA.CDS.6	Carg27119-RA.CDS.6	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg27119-RA.three_prime_UTR.1	Carg27119-RA.three_prime_UTR.1	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg27119-RA	Carg27119-RA-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000352	Peptide chain release factor class I/class II	PFAM	PF00472	RF-1	coord: 76..134 e-value: 4.2E-20 score: 71.7
None	No IPR available	GENE3D	G3DSA:3.30.160.20		coord: 74..138 e-value: 1.1E-25 score: 90.9
None	No IPR available	PANTHER	PTHR43804	FAMILY NOT NAMED	coord: 51..237
None	No IPR available	PANTHER	PTHR43804:SF6	CLASS I PEPTIDE CHAIN RELEASE FACTOR	coord: 51..237
None	No IPR available	SUPERFAMILY	SSF75620	Release factor	coord: 76..136