Carg26855-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg26855-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	stress enhanced protein 1, chloroplastic
Location	Cucurbita_argyrosperma_scaffold_344 : 169200 .. 171765 (-)
Sequence length	910

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTGGAGAAGAACAGATAAGGAGTTTTCCGGCGACAATCGAGCTCCTAAAATGGCCGTTCTTCATGCTTCCGCCTCCCTTTCTCTCGCCATACGCGGTACTCTCTTCATCTCTCTACACTTTCTCCATTTCGTTCTTCCGTTCTGTGATTGTTGAATATCCATCGATTCATAAAACACACGAACACAATGTTGCAGATGCTTCCTTCGCAAGATCAGCCCCAAAACCTTTTCCACTTCGCAGAGGTCGCCTCCCGAATTTATACCGATTCGGAACCACGTTTGCTACTGGCTCTCCACTTGGTACTTACAGAGTTTTATTCTTTCTATTCTCAGTCTAACTCGAATGTTTCTGCTTGATGTATTCATGATTTTTATCCATTAGTACGTTTTTTCATTTCAATCTTCATTTCAAGCATACAATGGAGCATGAATATTGAACTACCCTAATATAATATCAGAATGAAGTCTGAATGTTCTATAATATTGTGGTTATCCTGTTTCTTGCTTATTTTAAGCTGTGACGGTGAAATTGAATTCCATTCTAACATGAAGAGGTATGATTATTCTTAGCTAGAATTGAAATTTTTTCTCGGAAATGTTAGGGAAAACTGACACAGATATAATATATTCCACTTTGGTAGTGGCTTTTATCTTTTATTTCACTTAAAAGGCGTCGTATCAATAGAGGTATTGTCCCTCGTTTATGTATCCGTGATTGATCGTCCCTTGCGTATGTAGGACTTTGTTTGTCTTCCTCAATACTGTGGCTAGACTTTATGAAGTATCGGCTAATGGTTTTTCTTGTTCCCAGTGATAAGCAAGCCAAGTGGTCAAACGAAGCGTGCAATGAAACCAAATTCTGTTTCTATAAGATGTGAGCAAAGTAGCCAAGAGAGTAATAATCTGGATGTTTGGCTTGGGCGGCTAGCAATGGTAGGATTTGCAATTGCAATAAGTGTTGAAATAGCAACAGGCAAAGGTCTTTTGGAGGTATGGCCTTTCTAATTACAGAATTCGAGTCTTGTTACTTAGATTGCTGATAGCTGAAAGAAATTTGTTGTAGGGATTTCTGGACCTTTTGGAATCTGGAATTTGGCATATCTAATTCAAAACACCTTATTGTTATAAGATAATAGCTCCACTCCCTACTTATTTGGACAAAAGTATCTTGTACCACTGGGAGTATTCCATTTAAAGTGTTGAGTTGCACTAAAGATGGCTCTTAAAATGTATTTGGAATGTATTCCACTGGCTAGGTGCAAAACTCTCAACTGTCTACTTGGTCTGTCTTTTTTCAAGTGAATTAGAGAGGCGGATCTGATTGGTACGCTATGAACCAATCATTTTTCTCGTGCGAGTGCCACGGAATGGGCGAAGTTTTTTCTTGTAACTCTGCCATTTATATTCCCAGACACTTATCTCACTGATTTTGGCTTGCAAAAGAAGTGACCGCTGAATTATTCTAAGCTGATGGTTGGATATGCAGCATATGTGTGAGATCTCACATTGATCGGAGAGGGGAACGAACCATTCCTTATAGGGGTGTGGAAAACTCTCTAGCAGATGCGTTTTAAAACCTTGACGGGAACCCCGAAAGGGAAAGCCCAAAGAAGACAATATCTGCTAGTGGTGGGTTTGGGCTGTTACAAATGGTATCAGAACCAGACACTAGACGGTGTGTCAGCGAGGACGCTGGGCCTCAAGGGTGTGGAGAAACATCTCCCTAGCAAACGCATTTTAAAACCGCGAAGCTGACGGTGATACGTAACGGGCCAAAACGGACAATATCTGCTAGTGGCAGGCTTGGACGCTTGATTCATTATTCATTTTGGCCTTGGCCTTATATAAAAGTGGCCGTCTAAGTTTTTGTAGGCCGGGCTGCTCTTTCCAGTAGTGTACTTTGTTCAGTTAGAGGAATACCATTATCTTAGACTTAACCCTCGTTTTCTTTCTAGCGTCTTGTAATACAAGTTTCATACGAGACACATGAAGCACTTAACGAAACCTTACCAGAATCATTGTTTTCATGATGCAGAATTTTGGAGTAACGTCTCCCCTGCCTAGTGCAGCATTGGGAGTCACCGCATTGGTTGGCATATTGACAGCAGTTTTCATCTTTCAATCAGCTTCCAAAAACTGAACACGTCTAAGATTTTCACTGCACATTGGCTGTAAAGTTTGTGATCCTAAAAGATATTTGCTTGATATTCATTTTCATTCGTTCTAATACTCTAGATTGTGAACAACGATCAACTAAATTGGAGTGTTCGACTCAAAACACTTGTGTTTTTGTTGTGGACAGCGGTGATAGAGGGAGAGCCTGTGAAGCCTGCAATTAGCTACATCCAATTCTCAGTGAGGTAGAGCACTCAACTTTTCTTTTTCTTTCTTTCTTTTTGAGTTCTGTGTAGCACTGAAATACTTTCCCTGAGATTAAGTTTGGTTGTGTGATGATAATCATAAGATAAATGTTTAATCACTATCCATAAAAATACAATGAATGATGGATTATGTAAAATATTGTTTGTACAATAAATTCTAAAAGGAAAAATATAAGATATATATA

mRNA sequence

TTGGAGAAGAACAGATAAGGAGTTTTCCGGCGACAATCGAGCTCCTAAAATGGCCGTTCTTCATGCTTCCGCCTCCCTTTCTCTCGCCATACGCGATGCTTCCTTCGCAAGATCAGCCCCAAAACCTTTTCCACTTCGCAGAGGTCGCCTCCCGAATTTATACCGATTCGGAACCACGTTTGCTACTGGCTCTCCACTTGTGATAAGCAAGCCAAGTGGTCAAACGAAGCGTGCAATGAAACCAAATTCTGTTTCTATAAGATGTGAGCAAAGTAGCCAAGAGAGTAATAATCTGGATGTTTGGCTTGGGCGGCTAGCAATGGTAGGATTTGCAATTGCAATAAGTGTTGAAATAGCAACAGGCAAAGGTCTTTTGGAGAATTTTGGAGTAACGTCTCCCCTGCCTAGTGCAGCATTGGGAGTCACCGCATTGGTTGGCATATTGACAGCAGTTTTCATCTTTCAATCAGCTTCCAAAAACTGAACACGTCTAAGATTTTCACTGCACATTGGCTGTAAAGTTTGTGATCCTAAAAGATATTTGCTTGATATTCATTTTCATTCGTTCTAATACTCTAGATTGTGAACAACGATCAACTAAATTGGAGTGTTCGACTCAAAACACTTGTGTTTTTGTTGTGGACAGCGGTGATAGAGGGAGAGCCTGTGAAGCCTGCAATTAGCTACATCCAATTCTCAGTGAGGTAGAGCACTCAACTTTTCTTTTTCTTTCTTTCTTTTTGAGTTCTGTGTAGCACTGAAATACTTTCCCTGAGATTAAGTTTGGTTGTGTGATGATAATCATAAGATAAATGTTTAATCACTATCCATAAAAATACAATGAATGATGGATTATGTAAAATATTGTTTGTACAATAAATTCTAAAAGGAAAAATATAAGATATATATA

Coding sequence (CDS)

ATGGCCGTTCTTCATGCTTCCGCCTCCCTTTCTCTCGCCATACGCGATGCTTCCTTCGCAAGATCAGCCCCAAAACCTTTTCCACTTCGCAGAGGTCGCCTCCCGAATTTATACCGATTCGGAACCACGTTTGCTACTGGCTCTCCACTTGTGATAAGCAAGCCAAGTGGTCAAACGAAGCGTGCAATGAAACCAAATTCTGTTTCTATAAGATGTGAGCAAAGTAGCCAAGAGAGTAATAATCTGGATGTTTGGCTTGGGCGGCTAGCAATGGTAGGATTTGCAATTGCAATAAGTGTTGAAATAGCAACAGGCAAAGGTCTTTTGGAGAATTTTGGAGTAACGTCTCCCCTGCCTAGTGCAGCATTGGGAGTCACCGCATTGGTTGGCATATTGACAGCAGTTTTCATCTTTCAATCAGCTTCCAAAAACTGA

Protein sequence

MAVLHASASLSLAIRDASFARSAPKPFPLRRGRLPNLYRFGTTFATGSPLVISKPSGQTKRAMKPNSVSIRCEQSSQESNNLDVWLGRLAMVGFAIAISVEIATGKGLLENFGVTSPLPSAALGVTALVGILTAVFIFQSASKN

Homology

[Close]

BLAST of Carg26855-RA vs. NCBI nr
Match: XP_023529447.1 (stress enhanced protein 1, chloroplastic [Cucurbita pepo subsp. pepo] >XP_023529449.1 stress enhanced protein 1, chloroplastic [Cucurbita pepo subsp. pepo] >XP_023529450.1 stress enhanced protein 1, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 270.8 bits (691), Expect = 2.7e-69
Identity = 143/144 (99.31%), Postives = 143/144 (99.31%), Query Frame = 0


Query: 1   MAVLHASASLSLAIRDASFARSAPKPFPLRRGRLPNLYRFGTTFATGSPLVISKPSGQTK 60
           MAVLHASASLSLAIRDASFARSAPKPFPLRRG LPNLYRFGTTFATGSPLVISKPSGQTK
Sbjct: 1   MAVLHASASLSLAIRDASFARSAPKPFPLRRGHLPNLYRFGTTFATGSPLVISKPSGQTK 60

Query: 61  RAMKPNSVSIRCEQSSQESNNLDVWLGRLAMVGFAIAISVEIATGKGLLENFGVTSPLPS 120
           RAMKPNSVSIRCEQSSQESNNLDVWLGRLAMVGFAIAISVEIATGKGLLENFGVTSPLPS
Sbjct: 61  RAMKPNSVSIRCEQSSQESNNLDVWLGRLAMVGFAIAISVEIATGKGLLENFGVTSPLPS 120

Query: 121 AALGVTALVGILTAVFIFQSASKN 145
           AALGVTALVGILTAVFIFQSASKN
Sbjct: 121 AALGVTALVGILTAVFIFQSASKN 144

[Close]

BLAST of Carg26855-RA vs. NCBI nr
Match: XP_022927651.1 (stress enhanced protein 1, chloroplastic [Cucurbita moschata] >XP_022927652.1 stress enhanced protein 1, chloroplastic [Cucurbita moschata])

HSP 1 Score: 269.6 bits (688), Expect = 6.0e-69
Identity = 142/144 (98.61%), Postives = 143/144 (99.31%), Query Frame = 0


Query: 1   MAVLHASASLSLAIRDASFARSAPKPFPLRRGRLPNLYRFGTTFATGSPLVISKPSGQTK 60
           MAVLHASASLSLAIRDASFARSAPKPFPLRRG LPNLYRFGTTFATGSPLVISKPSGQTK
Sbjct: 1   MAVLHASASLSLAIRDASFARSAPKPFPLRRGHLPNLYRFGTTFATGSPLVISKPSGQTK 60

Query: 61  RAMKPNSVSIRCEQSSQESNNLDVWLGRLAMVGFAIAISVEIATGKGLLENFGVTSPLPS 120
           RAMKPNSVSIRCEQSSQESNNLDVWLGRLAMVGFAIAISVEIATGKGLLENFGVT+PLPS
Sbjct: 61  RAMKPNSVSIRCEQSSQESNNLDVWLGRLAMVGFAIAISVEIATGKGLLENFGVTAPLPS 120

Query: 121 AALGVTALVGILTAVFIFQSASKN 145
           AALGVTALVGILTAVFIFQSASKN
Sbjct: 121 AALGVTALVGILTAVFIFQSASKN 144

[Close]

BLAST of Carg26855-RA vs. NCBI nr
Match: XP_022988996.1 (stress enhanced protein 1, chloroplastic [Cucurbita maxima] >XP_022988997.1 stress enhanced protein 1, chloroplastic [Cucurbita maxima] >XP_022988998.1 stress enhanced protein 1, chloroplastic [Cucurbita maxima])

HSP 1 Score: 268.5 bits (685), Expect = 1.3e-68
Identity = 141/144 (97.92%), Postives = 143/144 (99.31%), Query Frame = 0


Query: 1   MAVLHASASLSLAIRDASFARSAPKPFPLRRGRLPNLYRFGTTFATGSPLVISKPSGQTK 60
           MAVLHASASLSLAIRDASFARSAPKPFPLRRG LPNLYRFGTTFATGSPLVISKP+GQTK
Sbjct: 1   MAVLHASASLSLAIRDASFARSAPKPFPLRRGHLPNLYRFGTTFATGSPLVISKPTGQTK 60

Query: 61  RAMKPNSVSIRCEQSSQESNNLDVWLGRLAMVGFAIAISVEIATGKGLLENFGVTSPLPS 120
           RAMKPNSVSIRCEQSSQESNNLDVWLGRLAMVGFAIAISVEIATGKGLLENFGVT+PLPS
Sbjct: 61  RAMKPNSVSIRCEQSSQESNNLDVWLGRLAMVGFAIAISVEIATGKGLLENFGVTAPLPS 120

Query: 121 AALGVTALVGILTAVFIFQSASKN 145
           AALGVTALVGILTAVFIFQSASKN
Sbjct: 121 AALGVTALVGILTAVFIFQSASKN 144

[Close]

BLAST of Carg26855-RA vs. NCBI nr
Match: XP_022148743.1 (ADP-ribosylation factor 2 [Momordica charantia])

HSP 1 Score: 233.8 bits (595), Expect = 3.7e-58
Identity = 124/143 (86.71%), Postives = 130/143 (90.91%), Query Frame = 0


Query: 1   MAVLHASASLSLAIRDASFARSAPKPFPLRRGRLPNLYRFGTTFATGSPLVISKPSGQTK 60
           MAVLHASASLSL IRDASFARSAPK FPL R  LPNLYR GT FATGSPLV+SKP+GQ K
Sbjct: 1   MAVLHASASLSLTIRDASFARSAPKVFPLHRRPLPNLYRIGTAFATGSPLVLSKPTGQKK 60

Query: 61  RAMKPNSVSIRCEQSSQESNNLDVWLGRLAMVGFAIAISVEIATGKGLLENFGVTSPLPS 120
            A KPNSVSIRCEQS+Q SNNLDVWLGRLAMVGFAIAISVEIATGKGLLENFG+T+PLP+
Sbjct: 61  HAWKPNSVSIRCEQSTQGSNNLDVWLGRLAMVGFAIAISVEIATGKGLLENFGLTTPLPT 120

Query: 121 AALGVTALVGILTAVFIFQSASK 144
            AL VTALVGILTAVFIFQSASK
Sbjct: 121 VALAVTALVGILTAVFIFQSASK 143

[Close]

BLAST of Carg26855-RA vs. NCBI nr
Match: XP_023553862.1 (stress enhanced protein 1, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 233.4 bits (594), Expect = 4.8e-58
Identity = 125/145 (86.21%), Postives = 132/145 (91.03%), Query Frame = 0


Query: 1   MAVLHASASLSLAIRDASFA-RSAPKPFPLRRGRLPNLYRFGTTFATGSPLVISKPSGQT 60
           MA LHASASLSLA+RDASFA R AP+ FPL RG LPNLYR GTTFATGSPLV+SKP+GQ 
Sbjct: 1   MAALHASASLSLAVRDASFARRRAPQVFPLHRGSLPNLYRLGTTFATGSPLVLSKPTGQK 60

Query: 61  KRAMKPNSVSIRCEQSSQESNNLDVWLGRLAMVGFAIAISVEIATGKGLLENFGVTSPLP 120
           K  +KPNSVSIRCEQSSQESN LDVWLGRLAMVGFAIAISVEIATGKGLLENFGVT+PLP
Sbjct: 61  KHKVKPNSVSIRCEQSSQESNILDVWLGRLAMVGFAIAISVEIATGKGLLENFGVTTPLP 120

Query: 121 SAALGVTALVGILTAVFIFQSASKN 145
           S AL VTALVGILTAVFIFQSA+KN
Sbjct: 121 SVALAVTALVGILTAVFIFQSATKN 145

[Close]

BLAST of Carg26855-RA vs. TAIR10
Match: AT4G34190.1 (stress enhanced protein 1)

HSP 1 Score: 136.3 bits (342), Expect = 1.4e-32
Identity = 80/146 (54.79%), Postives = 103/146 (70.55%), Query Frame = 0


Query: 1   MAVLHASASLSLAIRDASFARSA--PKPFPLRRGRLPNLYRFGTTFATGSPLVISKPSGQ 60
           MA+   SASL+ ++ ++   + A    P    R  +P L    +TFA+GSPL+  K S  
Sbjct: 1   MALSQVSASLAFSLPNSGALKLATITNPTSTCRVHVPQLAGIRSTFASGSPLLPLKLSMT 60

Query: 61  TKRAMKPNSVSIRCEQSSQESNNLDVWLGRLAMVGFAIAISVEIATGKGLLENFGVTSPL 120
            +   +  SVSIR EQS++ S+ LD+WLGR AMVGFA+AI+VEI+TGKGLLENFGV SPL
Sbjct: 61  RRGGNRAASVSIRSEQSTEGSSGLDIWLGRGAMVGFAVAITVEISTGKGLLENFGVASPL 120

Query: 121 PSAALGVTALVGILTAVFIFQSASKN 145
           P+ AL VTALVG+L AVFIFQS+SKN
Sbjct: 121 PTVALAVTALVGVLAAVFIFQSSSKN 146

[Close]

BLAST of Carg26855-RA vs. Swiss-Prot
Match: sp|Q9M7I9|STEP1_ARATH (Stress enhanced protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SEP1 PE=2 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 2.6e-31
Identity = 80/146 (54.79%), Postives = 103/146 (70.55%), Query Frame = 0


Query: 1   MAVLHASASLSLAIRDASFARSA--PKPFPLRRGRLPNLYRFGTTFATGSPLVISKPSGQ 60
           MA+   SASL+ ++ ++   + A    P    R  +P L    +TFA+GSPL+  K S  
Sbjct: 1   MALSQVSASLAFSLPNSGALKLATITNPTSTCRVHVPQLAGIRSTFASGSPLLPLKLSMT 60

Query: 61  TKRAMKPNSVSIRCEQSSQESNNLDVWLGRLAMVGFAIAISVEIATGKGLLENFGVTSPL 120
            +   +  SVSIR EQS++ S+ LD+WLGR AMVGFA+AI+VEI+TGKGLLENFGV SPL
Sbjct: 61  RRGGNRAASVSIRSEQSTEGSSGLDIWLGRGAMVGFAVAITVEISTGKGLLENFGVASPL 120

Query: 121 PSAALGVTALVGILTAVFIFQSASKN 145
           P+ AL VTALVG+L AVFIFQS+SKN
Sbjct: 121 PTVALAVTALVGVLAAVFIFQSSSKN 146

[Close]

BLAST of Carg26855-RA vs. TrEMBL
Match: tr|A0A1S3C121|A0A1S3C121_CUCME (stress enhanced protein 1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103495270 PE=4 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 1.0e-56
Identity = 123/144 (85.42%), Postives = 130/144 (90.28%), Query Frame = 0


Query: 1   MAVLHASASLSLAIRDASFARSAPKPFPLRRGRLPNLYRFGTTFATGSPLVISKPSGQTK 60
           MAVLHASASLSLAIRDASFAR+APK FPL R  LPNLYR GTTFATGSPLV+SKP GQ K
Sbjct: 1   MAVLHASASLSLAIRDASFARTAPKAFPLHRSLLPNLYRVGTTFATGSPLVLSKPIGQKK 60

Query: 61  RAMKPNSVSIRCEQSSQESNNLDVWLGRLAMVGFAIAISVEIATGKGLLENFGVTSPLPS 120
            A+K NSVSIRCEQS+Q+S NLDVWLGR AMVGFAIAISVEIATGKGLLEN GVTSPLPS
Sbjct: 61  HAVKQNSVSIRCEQSTQQS-NLDVWLGRFAMVGFAIAISVEIATGKGLLENLGVTSPLPS 120

Query: 121 AALGVTALVGILTAVFIFQSASKN 145
            AL VTALVG+LTAVFIFQSA+KN
Sbjct: 121 VALAVTALVGVLTAVFIFQSATKN 143

[Close]

BLAST of Carg26855-RA vs. TrEMBL
Match: tr|A0A0A0K2J5|A0A0A0K2J5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G072820 PE=4 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 3.9e-56
Identity = 120/144 (83.33%), Postives = 130/144 (90.28%), Query Frame = 0


Query: 1   MAVLHASASLSLAIRDASFARSAPKPFPLRRGRLPNLYRFGTTFATGSPLVISKPSGQTK 60
           MA+LHASASLSLA RD SFAR+APK FPL R  LPNL+R GTTFATGSPLV+SKP+GQ K
Sbjct: 1   MALLHASASLSLATRDVSFARTAPKAFPLHRSPLPNLFRIGTTFATGSPLVLSKPTGQKK 60

Query: 61  RAMKPNSVSIRCEQSSQESNNLDVWLGRLAMVGFAIAISVEIATGKGLLENFGVTSPLPS 120
            A+K NSVSIRCEQS+Q+S NLDVWLGR AMVGFAIAISVEIATGKGLLENFGVTSPLPS
Sbjct: 61  HALKQNSVSIRCEQSTQQS-NLDVWLGRFAMVGFAIAISVEIATGKGLLENFGVTSPLPS 120

Query: 121 AALGVTALVGILTAVFIFQSASKN 145
            AL VTALVG+LTAVFIFQSA+KN
Sbjct: 121 VALAVTALVGVLTAVFIFQSATKN 143

[Close]

BLAST of Carg26855-RA vs. TrEMBL
Match: tr|A0A2P5ERF0|A0A2P5ERF0_9ROSA (Chlorophyll a/b binding protein domain containing protein OS=Trema orientalis OX=63057 GN=TorRG33x02_161530 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 2.8e-38
Identity = 99/146 (67.81%), Postives = 111/146 (76.03%), Query Frame = 0


Query: 1   MAVLHASASLSLAIRDASFARSAPKPFPLRRGRLP--NLYRFGTTFATGSPLVISKPSGQ 60
           MAV   SASLS++IRDA    SA  P      RLP  NL R    FATGSPLV+ + S Q
Sbjct: 1   MAVAQISASLSVSIRDACAFSSATSP-----SRLPISNLARTRPAFATGSPLVLRRTSCQ 60

Query: 61  TKRAMKPNSVSIRCEQSSQESNNLDVWLGRLAMVGFAIAISVEIATGKGLLENFGVTSPL 120
            K A K    +IR EQS+Q+SN+LDVWLGRLAMVGFA+AI+VEIATGKGLLENFG+TSPL
Sbjct: 61  RKVACKATPFTIRSEQSTQDSNSLDVWLGRLAMVGFAVAITVEIATGKGLLENFGLTSPL 120

Query: 121 PSAALGVTALVGILTAVFIFQSASKN 145
           P+ AL VTALVGILTAVFIFQSASKN
Sbjct: 121 PTVALAVTALVGILTAVFIFQSASKN 141

[Close]

BLAST of Carg26855-RA vs. TrEMBL
Match: tr|A0A2P5DN21|A0A2P5DN21_PARAD (Chlorophyll a/b binding protein domain containing protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_047330 PE=4 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 6.2e-38
Identity = 98/146 (67.12%), Postives = 111/146 (76.03%), Query Frame = 0


Query: 1   MAVLHASASLSLAIRDASFARSAPKPFPLRRGRLP--NLYRFGTTFATGSPLVISKPSGQ 60
           MAV+  SASLS+++RDA    SA  P      RLP  NL R    FATGSPLV+ + S Q
Sbjct: 1   MAVVQISASLSVSMRDACAFSSATSP-----SRLPISNLARTRPAFATGSPLVLRRTSCQ 60

Query: 61  TKRAMKPNSVSIRCEQSSQESNNLDVWLGRLAMVGFAIAISVEIATGKGLLENFGVTSPL 120
            K A K    +IR EQS+Q SN+LDVWLGRLAMVGFA+AI+VEIATGKGLLENFG+TSPL
Sbjct: 61  RKVACKATPFTIRSEQSTQNSNSLDVWLGRLAMVGFAVAITVEIATGKGLLENFGLTSPL 120

Query: 121 PSAALGVTALVGILTAVFIFQSASKN 145
           P+ AL VTALVGILTAVFIFQSASKN
Sbjct: 121 PTVALAVTALVGILTAVFIFQSASKN 141

[Close]

BLAST of Carg26855-RA vs. TrEMBL
Match: tr|A0A1Q3B2V9|A0A1Q3B2V9_CEPFO (Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_05812 PE=4 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 1.8e-37
Identity = 91/144 (63.19%), Postives = 113/144 (78.47%), Query Frame = 0


Query: 1   MAVLHASASLSLAIRDASFARSAPKPFPLRRGRLPNLYRFGTTFATGSPLVISKPSGQTK 60
           MA+   S +LSL+IRD  +   +P    + R  +P+L R  + FATGSPL+IS  S + +
Sbjct: 1   MALAQLSTTLSLSIRDV-YTIGSPTTHNVSRFPIPSLVRGRSVFATGSPLLISPTSYRRR 60

Query: 61  RAMKPNSVSIRCEQSSQESNNLDVWLGRLAMVGFAIAISVEIATGKGLLENFGVTSPLPS 120
            A+K  SVSIRCEQS+Q+ N+LDVWLGR AMVGF++AI+VEIATGKGLLENFG+TSPLP+
Sbjct: 61  PAIKATSVSIRCEQSTQDDNSLDVWLGRFAMVGFSVAITVEIATGKGLLENFGLTSPLPT 120

Query: 121 AALGVTALVGILTAVFIFQSASKN 145
           AAL V ALVGILTAVFIFQSASK+
Sbjct: 121 AALAVAALVGILTAVFIFQSASKS 143

The following BLAST results are available for this feature:

BLAST of Carg26855-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023529447.1	2.7e-69	99.31	stress enhanced protein 1, chloroplastic [Cucurbita pepo subsp. pepo] >XP_023529...	[more]
XP_022927651.1	6.0e-69	98.61	stress enhanced protein 1, chloroplastic [Cucurbita moschata] >XP_022927652.1 st...	[more]
XP_022988996.1	1.3e-68	97.92	stress enhanced protein 1, chloroplastic [Cucurbita maxima] >XP_022988997.1 stre...	[more]
XP_022148743.1	3.7e-58	86.71	ADP-ribosylation factor 2 [Momordica charantia]	[more]
XP_023553862.1	4.8e-58	86.21	stress enhanced protein 1, chloroplastic-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg26855-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT4G34190.1	1.4e-32	54.79	stress enhanced protein 1	[more]

BLAST of Carg26855-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9M7I9\|STEP1_ARATH	2.6e-31	54.79	Stress enhanced protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SEP1...	[more]

BLAST of Carg26855-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C121\|A0A1S3C121_CUCME	1.0e-56	85.42	stress enhanced protein 1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103495270...	[more]
tr\|A0A0A0K2J5\|A0A0A0K2J5_CUCSA	3.9e-56	83.33	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G072820 PE=4 SV=1	[more]
tr\|A0A2P5ERF0\|A0A2P5ERF0_9ROSA	2.8e-38	67.81	Chlorophyll a/b binding protein domain containing protein OS=Trema orientalis OX...	[more]
tr\|A0A2P5DN21\|A0A2P5DN21_PARAD	6.2e-38	67.12	Chlorophyll a/b binding protein domain containing protein OS=Parasponia anderson...	[more]
tr\|A0A1Q3B2V9\|A0A1Q3B2V9_CEPFO	1.8e-37	63.19	Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_05812 PE=4...	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg26855	Carg26855	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg26855-RA	Carg26855-RA-protein	polypeptide

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg26855-RA.three_prime_UTR.1	Carg26855-RA.three_prime_UTR.1	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg26855-RA.CDS.4	Carg26855-RA.CDS.4	CDS
Carg26855-RA.CDS.3	Carg26855-RA.CDS.3	CDS
Carg26855-RA.CDS.2	Carg26855-RA.CDS.2	CDS
Carg26855-RA.CDS.1	Carg26855-RA.CDS.1	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg26855-RA.five_prime_UTR.1	Carg26855-RA.five_prime_UTR.1	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg26855-RA.exon.4	Carg26855-RA.exon.4	exon
Carg26855-RA.exon.3	Carg26855-RA.exon.3	exon
Carg26855-RA.exon.2	Carg26855-RA.exon.2	exon
Carg26855-RA.exon.1	Carg26855-RA.exon.1	exon

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR14154:SF18	STRESS ENHANCED PROTEIN 1, CHLOROPLASTIC	coord: 2..144
None	No IPR available	PANTHER	PTHR14154	UPF0041 BRAIN PROTEIN 44-RELATED	coord: 2..144
None	No IPR available	SUPERFAMILY	SSF103511	Chlorophyll a-b binding protein	coord: 80..123