Carg26814-RA (mRNA) Silver-seed gourd
The following sequences are available for this feature:
Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGCGTGTGGCTTCTCACTCAAAGCTCTGGGAATGTTGTCCACGAATTCCCCACGGCTTTTACAGCTCTTCCCCCTTTTCCTTTATAAACTCTTCTCTGTTTCTTCCCCATTTCATTGCATCTGCTTCTGAATCTGATTCTTTCATGTCTGACGATACTCAATCTTCTTCTTCTTCTTCTTCTTCTTCTTCTAATCGCCACCCCAAGTTCCGTGGAGTCCGCAGCCGAAGTGGCAAATGGGTCTCTGAAATCCGCCAGCCTCGACAGACCACTCGCATTTGGCTTGGCACCTACCCTACTCCTGACATGGCTGCAGCCGCCTACGACGTAGCTGCCCTCGCCCTTAAAGGCCCTGATGCCTCTCTTAATTTCCCAGACGCTCTCTTATCCTATCGCATTCCTTCCTCCACTTCCCCTTCTGATATCCGCGCCGCTGCTGCTCTTGCCGCTGCTGCCAGACACCCCGACACTGCTCCTGCTCCTGCTCCTGCTGCACATACCCGCCCTGTTGGTGGGGCAGGGTTTTCCTCTGACGCTACGGCCGCCGCCGCTGCCGCCCGGGAGTTCGTGGACGAGGAAGAGCTACTGAACATGCCCAATTTACTGGTGGACATGGCTGAGGGAATGCTGGTGAGTCCACCACGGATCAAGTCGCTCTCTTCCGATGACTCTCCCACAAATTCTCCAGGGGATGGATTATGGAGCTACTCCCAATAA ATGCGTGTGGCTTCTCACTCAAAGCTCTGGGAATGTTGTCCACGAATTCCCCACGGCTTTTACAGCTCTTCCCCCTTTTCCTTTATAAACTCTTCTCTGTTTCTTCCCCATTTCATTGCATCTGCTTCTGAATCTGATTCTTTCATGTCTGACGATACTCAATCTTCTTCTTCTTCTTCTTCTTCTTCTTCTAATCGCCACCCCAAGTTCCGTGGAGTCCGCAGCCGAAGTGGCAAATGGGTCTCTGAAATCCGCCAGCCTCGACAGACCACTCGCATTTGGCTTGGCACCTACCCTACTCCTGACATGGCTGCAGCCGCCTACGACGTAGCTGCCCTCGCCCTTAAAGGCCCTGATGCCTCTCTTAATTTCCCAGACGCTCTCTTATCCTATCGCATTCCTTCCTCCACTTCCCCTTCTGATATCCGCGCCGCTGCTGCTCTTGCCGCTGCTGCCAGACACCCCGACACTGCTCCTGCTCCTGCTCCTGCTGCACATACCCGCCCTGTTGGTGGGGCAGGGTTTTCCTCTGACGCTACGGCCGCCGCCGCTGCCGCCCGGGAGTTCGTGGACGAGGAAGAGCTACTGAACATGCCCAATTTACTGGTGGACATGGCTGAGGGAATGCTGGTGAGTCCACCACGGATCAAGTCGCTCTCTTCCGATGACTCTCCCACAAATTCTCCAGGGGATGGATTATGGAGCTACTCCCAATAA ATGCGTGTGGCTTCTCACTCAAAGCTCTGGGAATGTTGTCCACGAATTCCCCACGGCTTTTACAGCTCTTCCCCCTTTTCCTTTATAAACTCTTCTCTGTTTCTTCCCCATTTCATTGCATCTGCTTCTGAATCTGATTCTTTCATGTCTGACGATACTCAATCTTCTTCTTCTTCTTCTTCTTCTTCTTCTAATCGCCACCCCAAGTTCCGTGGAGTCCGCAGCCGAAGTGGCAAATGGGTCTCTGAAATCCGCCAGCCTCGACAGACCACTCGCATTTGGCTTGGCACCTACCCTACTCCTGACATGGCTGCAGCCGCCTACGACGTAGCTGCCCTCGCCCTTAAAGGCCCTGATGCCTCTCTTAATTTCCCAGACGCTCTCTTATCCTATCGCATTCCTTCCTCCACTTCCCCTTCTGATATCCGCGCCGCTGCTGCTCTTGCCGCTGCTGCCAGACACCCCGACACTGCTCCTGCTCCTGCTCCTGCTGCACATACCCGCCCTGTTGGTGGGGCAGGGTTTTCCTCTGACGCTACGGCCGCCGCCGCTGCCGCCCGGGAGTTCGTGGACGAGGAAGAGCTACTGAACATGCCCAATTTACTGGTGGACATGGCTGAGGGAATGCTGGTGAGTCCACCACGGATCAAGTCGCTCTCTTCCGATGACTCTCCCACAAATTCTCCAGGGGATGGATTATGGAGCTACTCCCAATAA MRVASHSKLWECCPRIPHGFYSSSPFSFINSSLFLPHFIASASESDSFMSDDTQSSSSSSSSSSNRHPKFRGVRSRSGKWVSEIRQPRQTTRIWLGTYPTPDMAAAAYDVAALALKGPDASLNFPDALLSYRIPSSTSPSDIRAAAALAAAARHPDTAPAPAPAAHTRPVGGAGFSSDATAAAAAAREFVDEEELLNMPNLLVDMAEGMLVSPPRIKSLSSDDSPTNSPGDGLWSYSQ
BLAST of Carg26814-RA vs. NCBI nr
Match: XP_022945058.1 (ethylene-responsive transcription factor ERF027-like [Cucurbita moschata]) HSP 1 Score: 334.3 bits (856), Expect = 3.3e-88 Identity = 238/238 (100.00%), Postives = 238/238 (100.00%), Query Frame = 0
BLAST of Carg26814-RA vs. NCBI nr
Match: XP_022968030.1 (ethylene-responsive transcription factor ERF027-like [Cucurbita maxima]) HSP 1 Score: 251.5 bits (641), Expect = 2.8e-63 Identity = 205/219 (93.61%), Postives = 206/219 (94.06%), Query Frame = 0
BLAST of Carg26814-RA vs. NCBI nr
Match: XP_023542005.1 (ethylene-responsive transcription factor ERF025 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 237.7 bits (605), Expect = 4.2e-59 Identity = 167/172 (97.09%), Postives = 167/172 (97.09%), Query Frame = 0
BLAST of Carg26814-RA vs. NCBI nr
Match: APQ47323.1 (AP2/ERF domain-containing transcription factor [Vernicia montana] >APQ47406.1 AP2/ERF domain-containing transcription factor [Vernicia fordii]) HSP 1 Score: 193.4 bits (490), Expect = 9.1e-46 Identity = 99/170 (58.24%), Postives = 115/170 (67.65%), Query Frame = 0
BLAST of Carg26814-RA vs. NCBI nr
Match: XP_004140856.1 (PREDICTED: ethylene-responsive transcription factor ERF025 [Cucumis sativus] >KGN57338.1 hypothetical protein Csa_3G180265 [Cucumis sativus]) HSP 1 Score: 186.8 bits (473), Expect = 8.5e-44 Identity = 138/178 (77.53%), Postives = 149/178 (83.71%), Query Frame = 0
BLAST of Carg26814-RA vs. TAIR10
Match: AT5G52020.1 (Integrase-type DNA-binding superfamily protein) HSP 1 Score: 159.8 bits (403), Expect = 2.0e-39 Identity = 90/172 (52.33%), Postives = 101/172 (58.72%), Query Frame = 0
BLAST of Carg26814-RA vs. TAIR10
Match: AT1G12630.1 (Integrase-type DNA-binding superfamily protein) HSP 1 Score: 149.4 bits (376), Expect = 2.7e-36 Identity = 111/176 (63.07%), Postives = 129/176 (73.30%), Query Frame = 0
BLAST of Carg26814-RA vs. TAIR10
Match: AT2G36450.1 (Integrase-type DNA-binding superfamily protein) HSP 1 Score: 120.9 bits (302), Expect = 1.0e-27 Identity = 89/174 (51.15%), Postives = 111/174 (63.79%), Query Frame = 0
BLAST of Carg26814-RA vs. TAIR10
Match: AT4G25490.1 (C-repeat/DRE binding factor 1) HSP 1 Score: 109.8 bits (273), Expect = 2.4e-24 Identity = 71/174 (40.80%), Postives = 89/174 (51.15%), Query Frame = 0
BLAST of Carg26814-RA vs. TAIR10
Match: AT5G51990.1 (C-repeat-binding factor 4) HSP 1 Score: 107.1 bits (266), Expect = 1.6e-23 Identity = 76/224 (33.93%), Postives = 103/224 (45.98%), Query Frame = 0
BLAST of Carg26814-RA vs. Swiss-Prot
Match: sp|Q9CAN9|ERF26_ARATH (Ethylene-responsive transcription factor ERF026 OS=Arabidopsis thaliana OX=3702 GN=ERF026 PE=2 SV=1) HSP 1 Score: 164.5 bits (415), Expect = 1.5e-39 Identity = 105/170 (61.76%), Postives = 121/170 (71.18%), Query Frame = 0
BLAST of Carg26814-RA vs. Swiss-Prot
Match: sp|Q9FJ90|ERF25_ARATH (Ethylene-responsive transcription factor ERF025 OS=Arabidopsis thaliana OX=3702 GN=ERF025 PE=2 SV=1) HSP 1 Score: 159.8 bits (403), Expect = 3.6e-38 Identity = 90/172 (52.33%), Postives = 101/172 (58.72%), Query Frame = 0
BLAST of Carg26814-RA vs. Swiss-Prot
Match: sp|Q38Q39|ERF27_ARATH (Ethylene-responsive transcription factor ERF027 OS=Arabidopsis thaliana OX=3702 GN=ERF027 PE=2 SV=1) HSP 1 Score: 149.4 bits (376), Expect = 4.9e-35 Identity = 111/176 (63.07%), Postives = 129/176 (73.30%), Query Frame = 0
BLAST of Carg26814-RA vs. Swiss-Prot
Match: sp|Q9SJR0|ERF24_ARATH (Ethylene-responsive transcription factor ERF024 OS=Arabidopsis thaliana OX=3702 GN=ERF024 PE=2 SV=1) HSP 1 Score: 120.9 bits (302), Expect = 1.9e-26 Identity = 89/174 (51.15%), Postives = 111/174 (63.79%), Query Frame = 0
BLAST of Carg26814-RA vs. Swiss-Prot
Match: sp|P93835|DRE1B_ARATH (Dehydration-responsive element-binding protein 1B OS=Arabidopsis thaliana OX=3702 GN=DREB1B PE=1 SV=2) HSP 1 Score: 109.8 bits (273), Expect = 4.3e-23 Identity = 71/174 (40.80%), Postives = 89/174 (51.15%), Query Frame = 0
BLAST of Carg26814-RA vs. TrEMBL
Match: tr|A0A1L6CAW2|A0A1L6CAW2_9ROSI (AP2/ERF domain-containing transcription factor OS=Vernicia montana OX=316732 PE=2 SV=1) HSP 1 Score: 193.4 bits (490), Expect = 6.0e-46 Identity = 99/170 (58.24%), Postives = 115/170 (67.65%), Query Frame = 0
BLAST of Carg26814-RA vs. TrEMBL
Match: tr|A0A1L6CB44|A0A1L6CB44_VERFO (AP2/ERF domain-containing transcription factor OS=Vernicia fordii OX=73154 PE=2 SV=1) HSP 1 Score: 193.4 bits (490), Expect = 6.0e-46 Identity = 99/170 (58.24%), Postives = 115/170 (67.65%), Query Frame = 0
BLAST of Carg26814-RA vs. TrEMBL
Match: tr|A0A0A0L6E0|A0A0A0L6E0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G180265 PE=4 SV=1) HSP 1 Score: 186.8 bits (473), Expect = 5.6e-44 Identity = 138/178 (77.53%), Postives = 149/178 (83.71%), Query Frame = 0
BLAST of Carg26814-RA vs. TrEMBL
Match: tr|A0A1S3AYS1|A0A1S3AYS1_CUCME (ethylene-responsive transcription factor ERF027 OS=Cucumis melo OX=3656 GN=LOC103484042 PE=4 SV=1) HSP 1 Score: 184.9 bits (468), Expect = 2.1e-43 Identity = 134/186 (72.04%), Postives = 144/186 (77.42%), Query Frame = 0
BLAST of Carg26814-RA vs. TrEMBL
Match: tr|A0A2I4FGI3|A0A2I4FGI3_9ROSI (ethylene-responsive transcription factor ERF027-like OS=Juglans regia OX=51240 GN=LOC108998614 PE=4 SV=1) HSP 1 Score: 184.5 bits (467), Expect = 2.8e-43 Identity = 102/171 (59.65%), Postives = 116/171 (67.84%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
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