Carg26181-RA (mRNA) Silver-seed gourd
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGAATTGGCTGTCTTTTAGTGACGATCCTGCTTGCTTGTTCGTGACGAATCCTGGTGAGATTACTCTGCTTGACGAGTTTCACGAATTTCGGCATCATAATTGTTATTGATTGAGTAGTCGAGTGTAAATATTTGCTTGCTTGTTGAAGTCATGAAACCATCTGGAAGTGGTTGTGACCGAGTGAGAAAGCTTGATCTGGTCACTCTGCTCGACGATTCTCTGCTACGAAATGATTTGAAATTTGTTGTGTTTCGGAGTGGATCTTGTTTATTTCAATGTTGGCATGAAATCTTCAAAAAATGAGTCTCGATTTAGCGAAGAACTTCGCTCGCTTGCTGATGGCAGATCCTTCTTTGCATTCTAAGTCTTTATCTTGTGTTCGTGGCGAATCTTGCACTGTTCTCTCTCCTGGATGAATATCACAATGTAGTCATACATTTGTTGTATTTTAGTTGTATTTTAGTTGTTTATTAATGGAGAAATCTTGTTCTGAACAATGCTTGGTTGTCGATTTACAGACGTGTTCGATCCGTTTTCTCCCACACGCAGCCTAAGCCAGGTTCTGAATCTGATGGATCAGTTCATGGAGGATCCGTTTCTGGCAGCTTCACGAGGAGTAGGAGCAGGATCAAGGAGGGGATGGGACGTGAGAGAAGACGACGACGCTCTGTATCTACGAATGGACATGCCTGGACTGAGCAAAGAAGATGTGAAAGTGAGTGTGGAGCAGAACACTCTCATTATCAAAGGCGAGGCTGCTAAAGAATCTGAGGACGAATCTGATCGGAGACGATTCTCGAGCCGACTTGATTTGCCTGCTAACCTCTATCAGCTGGATTCAATCAAAGCAGAGATGAAGAATGGAGTTCTGAAAGTAGCTGTGCCAAAGGTGAAGGAAGAGGAGAGGAAGGATGTGAAGCAAATTACTGTCGAGTAG ATGAATTGGCTGTCTTTTAGTGACGATCCTGCTTGCTTGTTCGTGACGAATCCTGACGTGTTCGATCCGTTTTCTCCCACACGCAGCCTAAGCCAGGTTCTGAATCTGATGGATCAGTTCATGGAGGATCCGTTTCTGGCAGCTTCACGAGGAGTAGGAGCAGGATCAAGGAGGGGATGGGACGTGAGAGAAGACGACGACGCTCTGTATCTACGAATGGACATGCCTGGACTGAGCAAAGAAGATGTGAAAGTGAGTGTGGAGCAGAACACTCTCATTATCAAAGGCGAGGCTGCTAAAGAATCTGAGGACGAATCTGATCGGAGACGATTCTCGAGCCGACTTGATTTGCCTGCTAACCTCTATCAGCTGGATTCAATCAAAGCAGAGATGAAGAATGGAGTTCTGAAAGTAGCTGTGCCAAAGGTGAAGGAAGAGGAGAGGAAGGATGTGAAGCAAATTACTGTCGAGTAG ATGAATTGGCTGTCTTTTAGTGACGATCCTGCTTGCTTGTTCGTGACGAATCCTGACGTGTTCGATCCGTTTTCTCCCACACGCAGCCTAAGCCAGGTTCTGAATCTGATGGATCAGTTCATGGAGGATCCGTTTCTGGCAGCTTCACGAGGAGTAGGAGCAGGATCAAGGAGGGGATGGGACGTGAGAGAAGACGACGACGCTCTGTATCTACGAATGGACATGCCTGGACTGAGCAAAGAAGATGTGAAAGTGAGTGTGGAGCAGAACACTCTCATTATCAAAGGCGAGGCTGCTAAAGAATCTGAGGACGAATCTGATCGGAGACGATTCTCGAGCCGACTTGATTTGCCTGCTAACCTCTATCAGCTGGATTCAATCAAAGCAGAGATGAAGAATGGAGTTCTGAAAGTAGCTGTGCCAAAGGTGAAGGAAGAGGAGAGGAAGGATGTGAAGCAAATTACTGTCGAGTAG MNWLSFSDDPACLFVTNPDVFDPFSPTRSLSQVLNLMDQFMEDPFLAASRGVGAGSRRGWDVREDDDALYLRMDMPGLSKEDVKVSVEQNTLIIKGEAAKESEDESDRRRFSSRLDLPANLYQLDSIKAEMKNGVLKVAVPKVKEEERKDVKQITVE
BLAST of Carg26181-RA vs. NCBI nr
Match: XP_022923528.1 (small heat shock protein, chloroplastic-like isoform X2 [Cucurbita moschata] >XP_023553455.1 small heat shock protein, chloroplastic-like isoform X2 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 269.2 bits (687), Expect = 8.6e-69 Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 0
BLAST of Carg26181-RA vs. NCBI nr
Match: XP_022923527.1 (small heat shock protein, chloroplastic-like isoform X1 [Cucurbita moschata] >XP_023553454.1 small heat shock protein, chloroplastic-like isoform X1 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 267.3 bits (682), Expect = 3.3e-68 Identity = 138/139 (99.28%), Postives = 139/139 (100.00%), Query Frame = 0
BLAST of Carg26181-RA vs. NCBI nr
Match: XP_022965184.1 (small heat shock protein, chloroplastic-like isoform X2 [Cucurbita maxima]) HSP 1 Score: 264.2 bits (674), Expect = 2.8e-67 Identity = 136/138 (98.55%), Postives = 137/138 (99.28%), Query Frame = 0
BLAST of Carg26181-RA vs. NCBI nr
Match: XP_022965183.1 (small heat shock protein, chloroplastic-like isoform X1 [Cucurbita maxima]) HSP 1 Score: 262.3 bits (669), Expect = 1.0e-66 Identity = 135/138 (97.83%), Postives = 137/138 (99.28%), Query Frame = 0
BLAST of Carg26181-RA vs. NCBI nr
Match: XP_008448861.1 (PREDICTED: small heat shock protein, chloroplastic isoform X2 [Cucumis melo]) HSP 1 Score: 256.9 bits (655), Expect = 4.4e-65 Identity = 130/139 (93.53%), Postives = 137/139 (98.56%), Query Frame = 0
BLAST of Carg26181-RA vs. TAIR10
Match: AT4G25200.1 (mitochondrion-localized small heat shock protein 23.6) HSP 1 Score: 195.3 bits (495), Expect = 2.9e-50 Identity = 96/143 (67.13%), Postives = 122/143 (85.31%), Query Frame = 0
BLAST of Carg26181-RA vs. TAIR10
Match: AT5G51440.1 (HSP20-like chaperones superfamily protein) HSP 1 Score: 174.1 bits (440), Expect = 6.8e-44 Identity = 87/141 (61.70%), Postives = 117/141 (82.98%), Query Frame = 0
BLAST of Carg26181-RA vs. TAIR10
Match: AT4G27670.1 (heat shock protein 21) HSP 1 Score: 110.5 bits (275), Expect = 9.3e-25 Identity = 61/137 (44.53%), Postives = 82/137 (59.85%), Query Frame = 0
BLAST of Carg26181-RA vs. TAIR10
Match: AT1G59860.1 (HSP20-like chaperones superfamily protein) HSP 1 Score: 76.6 bits (187), Expect = 1.5e-14 Identity = 54/150 (36.00%), Postives = 84/150 (56.00%), Query Frame = 0
BLAST of Carg26181-RA vs. TAIR10
Match: AT2G29500.1 (HSP20-like chaperones superfamily protein) HSP 1 Score: 75.9 bits (185), Expect = 2.5e-14 Identity = 55/147 (37.41%), Postives = 82/147 (55.78%), Query Frame = 0
BLAST of Carg26181-RA vs. Swiss-Prot
Match: sp|Q96331|HS23M_ARATH (23.6 kDa heat shock protein, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=HSP23.6 PE=2 SV=1) HSP 1 Score: 195.3 bits (495), Expect = 5.1e-49 Identity = 96/143 (67.13%), Postives = 122/143 (85.31%), Query Frame = 0
BLAST of Carg26181-RA vs. Swiss-Prot
Match: sp|P11890|HS23C_OXYRB (Small heat shock protein, chloroplastic OS=Oxybasis rubra OX=3560 GN=HSP23 PE=2 SV=1) HSP 1 Score: 181.0 bits (458), Expect = 1.0e-44 Identity = 94/150 (62.67%), Postives = 113/150 (75.33%), Query Frame = 0
BLAST of Carg26181-RA vs. Swiss-Prot
Match: sp|P46254|HS22M_PEA (Heat shock 22 kDa protein, mitochondrial OS=Pisum sativum OX=3888 GN=HSP22 PE=2 SV=1) HSP 1 Score: 174.1 bits (440), Expect = 1.2e-42 Identity = 94/141 (66.67%), Postives = 112/141 (79.43%), Query Frame = 0
BLAST of Carg26181-RA vs. Swiss-Prot
Match: sp|Q9FGM9|HS235_ARATH (23.5 kDa heat shock protein, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=HSP23.5 PE=2 SV=1) HSP 1 Score: 174.1 bits (440), Expect = 1.2e-42 Identity = 87/141 (61.70%), Postives = 117/141 (82.98%), Query Frame = 0
BLAST of Carg26181-RA vs. Swiss-Prot
Match: sp|Q39818|HS22M_SOYBN (Heat shock 22 kDa protein, mitochondrial OS=Glycine max OX=3847 GN=HSP23.9 PE=2 SV=1) HSP 1 Score: 146.4 bits (368), Expect = 2.7e-34 Identity = 72/102 (70.59%), Postives = 87/102 (85.29%), Query Frame = 0
BLAST of Carg26181-RA vs. TrEMBL
Match: tr|A0A1S3BKP4|A0A1S3BKP4_CUCME (small heat shock protein, chloroplastic isoform X2 OS=Cucumis melo OX=3656 GN=LOC103490892 PE=3 SV=1) HSP 1 Score: 256.9 bits (655), Expect = 2.9e-65 Identity = 130/139 (93.53%), Postives = 137/139 (98.56%), Query Frame = 0
BLAST of Carg26181-RA vs. TrEMBL
Match: tr|A0A1S3BK34|A0A1S3BK34_CUCME (small heat shock protein, chloroplastic isoform X1 OS=Cucumis melo OX=3656 GN=LOC103490892 PE=3 SV=1) HSP 1 Score: 255.0 bits (650), Expect = 1.1e-64 Identity = 129/139 (92.81%), Postives = 137/139 (98.56%), Query Frame = 0
BLAST of Carg26181-RA vs. TrEMBL
Match: tr|A0A1S3BKN7|A0A1S3BKN7_CUCME (small heat shock protein, chloroplastic-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103490889 PE=3 SV=1) HSP 1 Score: 252.7 bits (644), Expect = 5.5e-64 Identity = 127/139 (91.37%), Postives = 136/139 (97.84%), Query Frame = 0
BLAST of Carg26181-RA vs. TrEMBL
Match: tr|A0A1S3BKP0|A0A1S3BKP0_CUCME (small heat shock protein, chloroplastic-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103490889 PE=3 SV=1) HSP 1 Score: 250.8 bits (639), Expect = 2.1e-63 Identity = 126/139 (90.65%), Postives = 136/139 (97.84%), Query Frame = 0
BLAST of Carg26181-RA vs. TrEMBL
Match: tr|A0A0A0L1K2|A0A0A0L1K2_CUCSA (Mitochondrial small heat shock protein OS=Cucumis sativus OX=3659 GN=Csa_3G020090 PE=3 SV=1) HSP 1 Score: 246.5 bits (628), Expect = 3.9e-62 Identity = 131/154 (85.06%), Postives = 138/154 (89.61%), Query Frame = 0
The following BLAST results are available for this feature:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
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