Carg26181 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg26181
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Heat shock protein
Location	Cucurbita_argyrosperma_scaffold_219 : 4182 .. 5120 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATTGGCTGTCTTTTAGTGACGATCCTGCTTGCTTGTTCGTGACGAATCCTGGTGAGATTACTCTGCTTGACGAGTTTCACGAATTTCGGCATCATAATTGTTATTGATTGAGTAGTCGAGTGTAAATATTTGCTTGCTTGTTGAAGTCATGAAACCATCTGGAAGTGGTTGTGACCGAGTGAGAAAGCTTGATCTGGTCACTCTGCTCGACGATTCTCTGCTACGAAATGATTTGAAATTTGTTGTGTTTCGGAGTGGATCTTGTTTATTTCAATGTTGGCATGAAATCTTCAAAAAATGAGTCTCGATTTAGCGAAGAACTTCGCTCGCTTGCTGATGGCAGATCCTTCTTTGCATTCTAAGTCTTTATCTTGTGTTCGTGGCGAATCTTGCACTGTTCTCTCTCCTGGATGAATATCACAATGTAGTCATACATTTGTTGTATTTTAGTTGTATTTTAGTTGTTTATTAATGGAGAAATCTTGTTCTGAACAATGCTTGGTTGTCGATTTACAGACGTGTTCGATCCGTTTTCTCCCACACGCAGCCTAAGCCAGGTTCTGAATCTGATGGATCAGTTCATGGAGGATCCGTTTCTGGCAGCTTCACGAGGAGTAGGAGCAGGATCAAGGAGGGGATGGGACGTGAGAGAAGACGACGACGCTCTGTATCTACGAATGGACATGCCTGGACTGAGCAAAGAAGATGTGAAAGTGAGTGTGGAGCAGAACACTCTCATTATCAAAGGCGAGGCTGCTAAAGAATCTGAGGACGAATCTGATCGGAGACGATTCTCGAGCCGACTTGATTTGCCTGCTAACCTCTATCAGCTGGATTCAATCAAAGCAGAGATGAAGAATGGAGTTCTGAAAGTAGCTGTGCCAAAGGTGAAGGAAGAGGAGAGGAAGGATGTGAAGCAAATTACTGTCGAGTAG

mRNA sequence

ATGAATTGGCTGTCTTTTAGTGACGATCCTGCTTGCTTGTTCGTGACGAATCCTGACGTGTTCGATCCGTTTTCTCCCACACGCAGCCTAAGCCAGGTTCTGAATCTGATGGATCAGTTCATGGAGGATCCGTTTCTGGCAGCTTCACGAGGAGTAGGAGCAGGATCAAGGAGGGGATGGGACGTGAGAGAAGACGACGACGCTCTGTATCTACGAATGGACATGCCTGGACTGAGCAAAGAAGATGTGAAAGTGAGTGTGGAGCAGAACACTCTCATTATCAAAGGCGAGGCTGCTAAAGAATCTGAGGACGAATCTGATCGGAGACGATTCTCGAGCCGACTTGATTTGCCTGCTAACCTCTATCAGCTGGATTCAATCAAAGCAGAGATGAAGAATGGAGTTCTGAAAGTAGCTGTGCCAAAGGTGAAGGAAGAGGAGAGGAAGGATGTGAAGCAAATTACTGTCGAGTAG

Coding sequence (CDS)

ATGAATTGGCTGTCTTTTAGTGACGATCCTGCTTGCTTGTTCGTGACGAATCCTGACGTGTTCGATCCGTTTTCTCCCACACGCAGCCTAAGCCAGGTTCTGAATCTGATGGATCAGTTCATGGAGGATCCGTTTCTGGCAGCTTCACGAGGAGTAGGAGCAGGATCAAGGAGGGGATGGGACGTGAGAGAAGACGACGACGCTCTGTATCTACGAATGGACATGCCTGGACTGAGCAAAGAAGATGTGAAAGTGAGTGTGGAGCAGAACACTCTCATTATCAAAGGCGAGGCTGCTAAAGAATCTGAGGACGAATCTGATCGGAGACGATTCTCGAGCCGACTTGATTTGCCTGCTAACCTCTATCAGCTGGATTCAATCAAAGCAGAGATGAAGAATGGAGTTCTGAAAGTAGCTGTGCCAAAGGTGAAGGAAGAGGAGAGGAAGGATGTGAAGCAAATTACTGTCGAGTAG

Protein sequence

MNWLSFSDDPACLFVTNPDVFDPFSPTRSLSQVLNLMDQFMEDPFLAASRGVGAGSRRGWDVREDDDALYLRMDMPGLSKEDVKVSVEQNTLIIKGEAAKESEDESDRRRFSSRLDLPANLYQLDSIKAEMKNGVLKVAVPKVKEEERKDVKQITVE

Homology

[Close]

BLAST of Carg26181 vs. NCBI nr
Match: XP_022923528.1 (small heat shock protein, chloroplastic-like isoform X2 [Cucurbita moschata] >XP_023553455.1 small heat shock protein, chloroplastic-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 269.2 bits (687), Expect = 8.6e-69
Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 0


Query: 19  DVFDPFSPTRSLSQVLNLMDQFMEDPFLAASRGVGAGSRRGWDVREDDDALYLRMDMPGL 78
           DVFDPFSPTRSLSQVLNLMDQFMEDPFLAASRGVGAGSRRGWDVREDDDALYLRMDMPGL
Sbjct: 73  DVFDPFSPTRSLSQVLNLMDQFMEDPFLAASRGVGAGSRRGWDVREDDDALYLRMDMPGL 132

Query: 79  SKEDVKVSVEQNTLIIKGEAAKESEDESDRRRFSSRLDLPANLYQLDSIKAEMKNGVLKV 138
           SKEDVKVSVEQNTLIIKGEAAKESEDESDRRRFSSRLDLPANLYQLDSIKAEMKNGVLKV
Sbjct: 133 SKEDVKVSVEQNTLIIKGEAAKESEDESDRRRFSSRLDLPANLYQLDSIKAEMKNGVLKV 192

Query: 139 AVPKVKEEERKDVKQITVE 158
           AVPKVKEEERKDVKQITVE
Sbjct: 193 AVPKVKEEERKDVKQITVE 211

[Close]

BLAST of Carg26181 vs. NCBI nr
Match: XP_022923527.1 (small heat shock protein, chloroplastic-like isoform X1 [Cucurbita moschata] >XP_023553454.1 small heat shock protein, chloroplastic-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 267.3 bits (682), Expect = 3.3e-68
Identity = 138/139 (99.28%), Postives = 139/139 (100.00%), Query Frame = 0


Query: 19  DVFDPFSPTRSLSQVLNLMDQFMEDPFLAASRGVGAGSRRGWDVREDDDALYLRMDMPGL 78
           +VFDPFSPTRSLSQVLNLMDQFMEDPFLAASRGVGAGSRRGWDVREDDDALYLRMDMPGL
Sbjct: 74  NVFDPFSPTRSLSQVLNLMDQFMEDPFLAASRGVGAGSRRGWDVREDDDALYLRMDMPGL 133

Query: 79  SKEDVKVSVEQNTLIIKGEAAKESEDESDRRRFSSRLDLPANLYQLDSIKAEMKNGVLKV 138
           SKEDVKVSVEQNTLIIKGEAAKESEDESDRRRFSSRLDLPANLYQLDSIKAEMKNGVLKV
Sbjct: 134 SKEDVKVSVEQNTLIIKGEAAKESEDESDRRRFSSRLDLPANLYQLDSIKAEMKNGVLKV 193

Query: 139 AVPKVKEEERKDVKQITVE 158
           AVPKVKEEERKDVKQITVE
Sbjct: 194 AVPKVKEEERKDVKQITVE 212

[Close]

BLAST of Carg26181 vs. NCBI nr
Match: XP_022965184.1 (small heat shock protein, chloroplastic-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 264.2 bits (674), Expect = 2.8e-67
Identity = 136/138 (98.55%), Postives = 137/138 (99.28%), Query Frame = 0


Query: 19  DVFDPFSPTRSLSQVLNLMDQFMEDPFLAASRGVGAGSRRGWDVREDDDALYLRMDMPGL 78
           DVFDPFSPTRSLSQVLNLMDQFMEDP LAASRGVGAGSRRGWDVREDDDALYLRMDMPGL
Sbjct: 73  DVFDPFSPTRSLSQVLNLMDQFMEDPLLAASRGVGAGSRRGWDVREDDDALYLRMDMPGL 132

Query: 79  SKEDVKVSVEQNTLIIKGEAAKESEDESDRRRFSSRLDLPANLYQLDSIKAEMKNGVLKV 138
           SKEDVKVSVEQNTLIIKGEAAKESEDESDRRRFSSRLDLPANLY+LDSIKAEMKNGVLKV
Sbjct: 133 SKEDVKVSVEQNTLIIKGEAAKESEDESDRRRFSSRLDLPANLYELDSIKAEMKNGVLKV 192

Query: 139 AVPKVKEEERKDVKQITV 157
           AVPKVKEEERKDVKQITV
Sbjct: 193 AVPKVKEEERKDVKQITV 210

[Close]

BLAST of Carg26181 vs. NCBI nr
Match: XP_022965183.1 (small heat shock protein, chloroplastic-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 262.3 bits (669), Expect = 1.0e-66
Identity = 135/138 (97.83%), Postives = 137/138 (99.28%), Query Frame = 0


Query: 19  DVFDPFSPTRSLSQVLNLMDQFMEDPFLAASRGVGAGSRRGWDVREDDDALYLRMDMPGL 78
           +VFDPFSPTRSLSQVLNLMDQFMEDP LAASRGVGAGSRRGWDVREDDDALYLRMDMPGL
Sbjct: 74  NVFDPFSPTRSLSQVLNLMDQFMEDPLLAASRGVGAGSRRGWDVREDDDALYLRMDMPGL 133

Query: 79  SKEDVKVSVEQNTLIIKGEAAKESEDESDRRRFSSRLDLPANLYQLDSIKAEMKNGVLKV 138
           SKEDVKVSVEQNTLIIKGEAAKESEDESDRRRFSSRLDLPANLY+LDSIKAEMKNGVLKV
Sbjct: 134 SKEDVKVSVEQNTLIIKGEAAKESEDESDRRRFSSRLDLPANLYELDSIKAEMKNGVLKV 193

Query: 139 AVPKVKEEERKDVKQITV 157
           AVPKVKEEERKDVKQITV
Sbjct: 194 AVPKVKEEERKDVKQITV 211

[Close]

BLAST of Carg26181 vs. NCBI nr
Match: XP_008448861.1 (PREDICTED: small heat shock protein, chloroplastic isoform X2 [Cucumis melo])

HSP 1 Score: 256.9 bits (655), Expect = 4.4e-65
Identity = 130/139 (93.53%), Postives = 137/139 (98.56%), Query Frame = 0


Query: 19  DVFDPFSPTRSLSQVLNLMDQFMEDPFLAASRGVGAGSRRGWDVREDDDALYLRMDMPGL 78
           DVFDPFSPTRSLSQVLNLMDQFMEDPFLAASRGVGAGSRRGWDV+EDD+ALYLRMDMPGL
Sbjct: 74  DVFDPFSPTRSLSQVLNLMDQFMEDPFLAASRGVGAGSRRGWDVKEDDNALYLRMDMPGL 133

Query: 79  SKEDVKVSVEQNTLIIKGEAAKESEDESDRRRFSSRLDLPANLYQLDSIKAEMKNGVLKV 138
           SK+DVKVSVEQNTLIIKGEAAKESEDE DRRRFSSRLDLPANLY+L+SIKAEMKNGVLKV
Sbjct: 134 SKDDVKVSVEQNTLIIKGEAAKESEDEEDRRRFSSRLDLPANLYELNSIKAEMKNGVLKV 193

Query: 139 AVPKVKEEERKDVKQITVE 158
           AVPKVKEEERKDV+ +TVE
Sbjct: 194 AVPKVKEEERKDVRHVTVE 212

[Close]

BLAST of Carg26181 vs. TAIR10
Match: AT4G25200.1 (mitochondrion-localized small heat shock protein 23.6)

HSP 1 Score: 195.3 bits (495), Expect = 2.9e-50
Identity = 96/143 (67.13%), Postives = 122/143 (85.31%), Query Frame = 0


Query: 19  DVFDPFSPTRSLSQVLNLMDQFMEDPFLAASRGVGA-GSRRGWDVREDDDALYLRMDMPG 78
           DVFDPFSPTRS+SQVLNLMDQFME+P L+A+RG+GA G+RRGWD++E DDALYLR+DMPG
Sbjct: 67  DVFDPFSPTRSVSQVLNLMDQFMENPLLSATRGMGASGARRGWDIKEKDDALYLRIDMPG 126

Query: 79  LSKEDVKVSVEQNTLIIKGEAAKE----SEDESDRRRFSSRLDLPANLYQLDSIKAEMKN 138
           LS+EDVK+++EQ+TL+I+GE   E     E ES  RRF+SR+ LP  +Y++D IKAEMKN
Sbjct: 127 LSREDVKLALEQDTLVIRGEGKNEEDGGEEGESGNRRFTSRIGLPDKIYKIDEIKAEMKN 186

Query: 139 GVLKVAVPKVKEEERKDVKQITV 157
           GVLKV +PK+KE+ER DV+QI +
Sbjct: 187 GVLKVVIPKMKEQERNDVRQIEI 209

[Close]

BLAST of Carg26181 vs. TAIR10
Match: AT5G51440.1 (HSP20-like chaperones superfamily protein)

HSP 1 Score: 174.1 bits (440), Expect = 6.8e-44
Identity = 87/141 (61.70%), Postives = 117/141 (82.98%), Query Frame = 0


Query: 20  VFDPFSPTRSLSQVLNLMDQFMEDPFLAASRGVGA-GSRRGWDVREDDDALYLRMDMPGL 79
           + DPF+PTRSLSQ+LN MDQ  E P ++A+RG+GA G RRGW+V+E DDAL+LR+DMPGL
Sbjct: 70  ILDPFTPTRSLSQMLNFMDQVSEIPLVSATRGMGASGVRRGWNVKEKDDALHLRIDMPGL 129

Query: 80  SKEDVKVSVEQNTLIIKGEA-AKESEDES-DRRRFSSRLDLPANLYQLDSIKAEMKNGVL 139
           S+EDVK+++EQNTL+I+GE   +E ED S D RRF+SR++LP  +Y+ D IKAEMKNGVL
Sbjct: 130 SREDVKLALEQNTLVIRGEGETEEGEDVSGDGRRFTSRIELPEKVYKTDEIKAEMKNGVL 189

Query: 140 KVAVPKVKEEERKDVKQITVE 158
           KV +PK+KE+ER +++ I V+
Sbjct: 190 KVVIPKIKEDERNNIRHINVD 210

[Close]

BLAST of Carg26181 vs. TAIR10
Match: AT4G27670.1 (heat shock protein 21)

HSP 1 Score: 110.5 bits (275), Expect = 9.3e-25
Identity = 61/137 (44.53%), Postives = 82/137 (59.85%), Query Frame = 0


Query: 20  VFDPFSPTRSLSQVLNLMDQFMEDPFLAASRGVGAGS----RRGWDVREDDDALYLRMDM 79
           + DP SP R+    L+ MD+  ED    + R  G       R  WD++E++  + +R DM
Sbjct: 85  LLDPLSPMRTXXXXLDTMDRMFEDTMPVSGRNRGGSGVSEIRAPWDIKEEEHEIKMRFDM 144

Query: 80  PGLSKEDVKVSVEQNTLIIKGEAAKESEDESDRRR----FSSRLDLPANLYQLDSIKAEM 139
           PGLSKEDVK+SVE N L+IKGE  KE  D+S   R    + +RL LP N  + D IKAE+
Sbjct: 145 PGLSKEDVKISVEDNVLVIKGEQKKEDSDDSWSGRSVSSYGTRLQLPDNC-EKDKIKAEL 204

Query: 140 KNGVLKVAVPKVKEEER 149
           KNGVL + +PK K E +
Sbjct: 205 KNGVLFITIPKTKVERK 220

[Close]

BLAST of Carg26181 vs. TAIR10
Match: AT1G59860.1 (HSP20-like chaperones superfamily protein)

HSP 1 Score: 76.6 bits (187), Expect = 1.5e-14
Identity = 54/150 (36.00%), Postives = 84/150 (56.00%), Query Frame = 0


Query: 17  NPDVFDPFSPTRSLSQVLNLMDQFMEDPFLAASRGVGAGSRRGWDVREDDDALYLRMDMP 76
           N ++FDPFS        L++ D F E  F ++S    A +R  W  +E  +A   + D+P
Sbjct: 15  NNNIFDPFS--------LDVWDPFKELQFPSSSSSAIANARVDW--KETAEAHVFKADLP 74

Query: 77  GLSKEDVKVSVEQNTLI-IKGEAAKESEDESDRRR--------FSSRLDLPANLYQLDSI 136
           G+ KE+VKV +E ++++ I GE   E E++ D           FS +  LP N+ ++D +
Sbjct: 75  GMKKEEVKVEIEDDSVLKISGERHVEKEEKQDTWHRVERSSGGFSRKFRLPENV-KMDQV 134

Query: 137 KAEMKNGVLKVAVPKVKEEERK-DVKQITV 157
           KA M+NGVL V VPKV+  ++K  VK I +
Sbjct: 135 KASMENGVLTVTVPKVETNKKKAQVKSIDI 153

[Close]

BLAST of Carg26181 vs. TAIR10
Match: AT2G29500.1 (HSP20-like chaperones superfamily protein)

HSP 1 Score: 75.9 bits (185), Expect = 2.5e-14
Identity = 55/147 (37.41%), Postives = 82/147 (55.78%), Query Frame = 0


Query: 19  DVFDPFSPTRSLSQVLNLMDQFMEDPFLAASRGVGAGSRRGWDVREDDDALYLRMDMPGL 78
           ++FDPFS        L++ D F E    + SR   A      D RE  +A   + D+PGL
Sbjct: 15  NIFDPFS--------LDVWDPFKELTSSSLSRENSAIVNARVDWRETPEAHVFKADLPGL 74

Query: 79  SKEDVKVSVEQNTLI-IKGEAAKESEDESD--------RRRFSSRLDLPANLYQLDSIKA 138
            KE+VKV +E+++++ I GE   E ED++D          +F+ R  LP N+ ++D +KA
Sbjct: 75  KKEEVKVEIEEDSVLKISGERHVEKEDKNDTWHRVERSSGQFTRRFRLPENV-KMDQVKA 134

Query: 139 EMKNGVLKVAVPKVKEEERKDVKQITV 157
            M+NGVL V VPK  E ++ DVK I +
Sbjct: 135 AMENGVLTVTVPKA-ETKKADVKSIQI 151

[Close]

BLAST of Carg26181 vs. Swiss-Prot
Match: sp|Q96331|HS23M_ARATH (23.6 kDa heat shock protein, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=HSP23.6 PE=2 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 5.1e-49
Identity = 96/143 (67.13%), Postives = 122/143 (85.31%), Query Frame = 0


Query: 19  DVFDPFSPTRSLSQVLNLMDQFMEDPFLAASRGVGA-GSRRGWDVREDDDALYLRMDMPG 78
           DVFDPFSPTRS+SQVLNLMDQFME+P L+A+RG+GA G+RRGWD++E DDALYLR+DMPG
Sbjct: 67  DVFDPFSPTRSVSQVLNLMDQFMENPLLSATRGMGASGARRGWDIKEKDDALYLRIDMPG 126

Query: 79  LSKEDVKVSVEQNTLIIKGEAAKE----SEDESDRRRFSSRLDLPANLYQLDSIKAEMKN 138
           LS+EDVK+++EQ+TL+I+GE   E     E ES  RRF+SR+ LP  +Y++D IKAEMKN
Sbjct: 127 LSREDVKLALEQDTLVIRGEGKNEEDGGEEGESGNRRFTSRIGLPDKIYKIDEIKAEMKN 186

Query: 139 GVLKVAVPKVKEEERKDVKQITV 157
           GVLKV +PK+KE+ER DV+QI +
Sbjct: 187 GVLKVVIPKMKEQERNDVRQIEI 209

[Close]

BLAST of Carg26181 vs. Swiss-Prot
Match: sp|P11890|HS23C_OXYRB (Small heat shock protein, chloroplastic OS=Oxybasis rubra OX=3560 GN=HSP23 PE=2 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 1.0e-44
Identity = 94/150 (62.67%), Postives = 113/150 (75.33%), Query Frame = 0


Query: 8   DDPACLFVTNPDVFDPFSPTRSLSQVLNLMDQFMEDPFLAASRGVGAGSRRGWDVREDDD 67
           D PA  F    DVFDPF  TRS+ Q++NLMDQ ME+PF+AASRG G   RRGWDVRED++
Sbjct: 58  DFPASFF---SDVFDPFRATRSVGQLMNLMDQLMENPFMAASRGSGRAMRRGWDVREDEE 117

Query: 68  ALYLRMDMPGLSKEDVKVSVEQNTLIIKGEAAKESEDESDRRRFSSRLDLPANLYQLDSI 127
           AL L++DMPGL+KEDVKVSVE NTLIIK E             +SSR++L  NLY++D I
Sbjct: 118 ALELKVDMPGLAKEDVKVSVEDNTLIIKSEXXXXXXXXXXXXXYSSRIELTPNLYKIDGI 177

Query: 128 KAEMKNGVLKVAVPKVKEEERKDVKQITVE 158
           KAEMKNGVLKV VPK+KEEE+KDV Q+ V+
Sbjct: 178 KAEMKNGVLKVTVPKIKEEEKKDVFQVMVD 204

[Close]

BLAST of Carg26181 vs. Swiss-Prot
Match: sp|P46254|HS22M_PEA (Heat shock 22 kDa protein, mitochondrial OS=Pisum sativum OX=3888 GN=HSP22 PE=2 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 1.2e-42
Identity = 94/141 (66.67%), Postives = 112/141 (79.43%), Query Frame = 0


Query: 19  DVFDPFSPTRSLSQVLNLMDQFMEDPFLAASRGVGAGSRRGWDVREDDDALYLRMDMPGL 78
           DVFDPFSP RSLSQVLN++D   ++P L+A+      SRRGWD RE +DAL+LR+DMPGL
Sbjct: 68  DVFDPFSPPRSLSQVLNMVDLLTDNPVLSAA------SRRGWDARETEDALFLRLDMPGL 127

Query: 79  SKEDVKVSVEQNTLIIKG-EAAKESED-ESDRRRFSSRLDLPANLYQLDSIKAEMKNGVL 138
            KEDVK+SVEQNTL IKG E AKESE+ E   RRFSSR+DLP  LY++D IKAEMKNGVL
Sbjct: 128 GKEDVKISVEQNTLTIKGEEGAKESEEKEKSGRRFSSRIDLPEKLYKIDVIKAEMKNGVL 187

Query: 139 KVAVPKVKEEERKDVKQITVE 158
           KV VPK+KEEER +V  + V+
Sbjct: 188 KVTVPKMKEEERNNVINVKVD 202

[Close]

BLAST of Carg26181 vs. Swiss-Prot
Match: sp|Q9FGM9|HS235_ARATH (23.5 kDa heat shock protein, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=HSP23.5 PE=2 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 1.2e-42
Identity = 87/141 (61.70%), Postives = 117/141 (82.98%), Query Frame = 0


Query: 20  VFDPFSPTRSLSQVLNLMDQFMEDPFLAASRGVGA-GSRRGWDVREDDDALYLRMDMPGL 79
           + DPF+PTRSLSQ+LN MDQ  E P ++A+RG+GA G RRGW+V+E DDAL+LR+DMPGL
Sbjct: 70  ILDPFTPTRSLSQMLNFMDQVSEIPLVSATRGMGASGVRRGWNVKEKDDALHLRIDMPGL 129

Query: 80  SKEDVKVSVEQNTLIIKGEA-AKESEDES-DRRRFSSRLDLPANLYQLDSIKAEMKNGVL 139
           S+EDVK+++EQNTL+I+GE   +E ED S D RRF+SR++LP  +Y+ D IKAEMKNGVL
Sbjct: 130 SREDVKLALEQNTLVIRGEGETEEGEDVSGDGRRFTSRIELPEKVYKTDEIKAEMKNGVL 189

Query: 140 KVAVPKVKEEERKDVKQITVE 158
           KV +PK+KE+ER +++ I V+
Sbjct: 190 KVVIPKIKEDERNNIRHINVD 210

[Close]

BLAST of Carg26181 vs. Swiss-Prot
Match: sp|Q39818|HS22M_SOYBN (Heat shock 22 kDa protein, mitochondrial OS=Glycine max OX=3847 GN=HSP23.9 PE=2 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 2.7e-34
Identity = 72/102 (70.59%), Postives = 87/102 (85.29%), Query Frame = 0


Query: 56  SRRGWDVREDDDALYLRMDMPGLSKEDVKVSVEQNTLIIKGEAAKESEDESDRRRFSSRL 115
           S RGWD RE +DAL+LR+DMPGL+KEDVK+SVEQNTLIIKGE AKE ++E   RR++SR+
Sbjct: 110 SGRGWDARETEDALHLRVDMPGLAKEDVKISVEQNTLIIKGEGAKEGDEEESARRYTSRI 169

Query: 116 DLPANLYQLDSIKAEMKNGVLKVAVPKVKEEERKDVKQITVE 158
           DLP  LY++D I+AEMKNGVLKV VPK+KEEERKDV  + VE
Sbjct: 170 DLPDKLYKIDQIRAEMKNGVLKVVVPKMKEEERKDVISVKVE 211

[Close]

BLAST of Carg26181 vs. TrEMBL
Match: tr|A0A1S3BKP4|A0A1S3BKP4_CUCME (small heat shock protein, chloroplastic isoform X2 OS=Cucumis melo OX=3656 GN=LOC103490892 PE=3 SV=1)

HSP 1 Score: 256.9 bits (655), Expect = 2.9e-65
Identity = 130/139 (93.53%), Postives = 137/139 (98.56%), Query Frame = 0


Query: 19  DVFDPFSPTRSLSQVLNLMDQFMEDPFLAASRGVGAGSRRGWDVREDDDALYLRMDMPGL 78
           DVFDPFSPTRSLSQVLNLMDQFMEDPFLAASRGVGAGSRRGWDV+EDD+ALYLRMDMPGL
Sbjct: 74  DVFDPFSPTRSLSQVLNLMDQFMEDPFLAASRGVGAGSRRGWDVKEDDNALYLRMDMPGL 133

Query: 79  SKEDVKVSVEQNTLIIKGEAAKESEDESDRRRFSSRLDLPANLYQLDSIKAEMKNGVLKV 138
           SK+DVKVSVEQNTLIIKGEAAKESEDE DRRRFSSRLDLPANLY+L+SIKAEMKNGVLKV
Sbjct: 134 SKDDVKVSVEQNTLIIKGEAAKESEDEEDRRRFSSRLDLPANLYELNSIKAEMKNGVLKV 193

Query: 139 AVPKVKEEERKDVKQITVE 158
           AVPKVKEEERKDV+ +TVE
Sbjct: 194 AVPKVKEEERKDVRHVTVE 212

[Close]

BLAST of Carg26181 vs. TrEMBL
Match: tr|A0A1S3BK34|A0A1S3BK34_CUCME (small heat shock protein, chloroplastic isoform X1 OS=Cucumis melo OX=3656 GN=LOC103490892 PE=3 SV=1)

HSP 1 Score: 255.0 bits (650), Expect = 1.1e-64
Identity = 129/139 (92.81%), Postives = 137/139 (98.56%), Query Frame = 0


Query: 19  DVFDPFSPTRSLSQVLNLMDQFMEDPFLAASRGVGAGSRRGWDVREDDDALYLRMDMPGL 78
           +VFDPFSPTRSLSQVLNLMDQFMEDPFLAASRGVGAGSRRGWDV+EDD+ALYLRMDMPGL
Sbjct: 75  NVFDPFSPTRSLSQVLNLMDQFMEDPFLAASRGVGAGSRRGWDVKEDDNALYLRMDMPGL 134

Query: 79  SKEDVKVSVEQNTLIIKGEAAKESEDESDRRRFSSRLDLPANLYQLDSIKAEMKNGVLKV 138
           SK+DVKVSVEQNTLIIKGEAAKESEDE DRRRFSSRLDLPANLY+L+SIKAEMKNGVLKV
Sbjct: 135 SKDDVKVSVEQNTLIIKGEAAKESEDEEDRRRFSSRLDLPANLYELNSIKAEMKNGVLKV 194

Query: 139 AVPKVKEEERKDVKQITVE 158
           AVPKVKEEERKDV+ +TVE
Sbjct: 195 AVPKVKEEERKDVRHVTVE 213

[Close]

BLAST of Carg26181 vs. TrEMBL
Match: tr|A0A1S3BKN7|A0A1S3BKN7_CUCME (small heat shock protein, chloroplastic-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103490889 PE=3 SV=1)

HSP 1 Score: 252.7 bits (644), Expect = 5.5e-64
Identity = 127/139 (91.37%), Postives = 136/139 (97.84%), Query Frame = 0


Query: 19  DVFDPFSPTRSLSQVLNLMDQFMEDPFLAASRGVGAGSRRGWDVREDDDALYLRMDMPGL 78
           DVFDPFSPTRSLSQVLNLMDQFMEDPFLAASRGVGAG+RRGWDV+EDD+ALYLRMDMPGL
Sbjct: 74  DVFDPFSPTRSLSQVLNLMDQFMEDPFLAASRGVGAGTRRGWDVKEDDNALYLRMDMPGL 133

Query: 79  SKEDVKVSVEQNTLIIKGEAAKESEDESDRRRFSSRLDLPANLYQLDSIKAEMKNGVLKV 138
           SK+DV+VSVEQNTLIIKGE AKESEDE DRRRFSSRLDLPANLY+L+SIKAEMKNGVLKV
Sbjct: 134 SKDDVRVSVEQNTLIIKGEEAKESEDEEDRRRFSSRLDLPANLYELNSIKAEMKNGVLKV 193

Query: 139 AVPKVKEEERKDVKQITVE 158
           AVPKVKEEERKDV+ +TVE
Sbjct: 194 AVPKVKEEERKDVRHVTVE 212

[Close]

BLAST of Carg26181 vs. TrEMBL
Match: tr|A0A1S3BKP0|A0A1S3BKP0_CUCME (small heat shock protein, chloroplastic-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103490889 PE=3 SV=1)

HSP 1 Score: 250.8 bits (639), Expect = 2.1e-63
Identity = 126/139 (90.65%), Postives = 136/139 (97.84%), Query Frame = 0


Query: 19  DVFDPFSPTRSLSQVLNLMDQFMEDPFLAASRGVGAGSRRGWDVREDDDALYLRMDMPGL 78
           +VFDPFSPTRSLSQVLNLMDQFMEDPFLAASRGVGAG+RRGWDV+EDD+ALYLRMDMPGL
Sbjct: 75  NVFDPFSPTRSLSQVLNLMDQFMEDPFLAASRGVGAGTRRGWDVKEDDNALYLRMDMPGL 134

Query: 79  SKEDVKVSVEQNTLIIKGEAAKESEDESDRRRFSSRLDLPANLYQLDSIKAEMKNGVLKV 138
           SK+DV+VSVEQNTLIIKGE AKESEDE DRRRFSSRLDLPANLY+L+SIKAEMKNGVLKV
Sbjct: 135 SKDDVRVSVEQNTLIIKGEEAKESEDEEDRRRFSSRLDLPANLYELNSIKAEMKNGVLKV 194

Query: 139 AVPKVKEEERKDVKQITVE 158
           AVPKVKEEERKDV+ +TVE
Sbjct: 195 AVPKVKEEERKDVRHVTVE 213

[Close]

BLAST of Carg26181 vs. TrEMBL
Match: tr|A0A0A0L1K2|A0A0A0L1K2_CUCSA (Mitochondrial small heat shock protein OS=Cucumis sativus OX=3659 GN=Csa_3G020090 PE=3 SV=1)

HSP 1 Score: 246.5 bits (628), Expect = 3.9e-62
Identity = 131/154 (85.06%), Postives = 138/154 (89.61%), Query Frame = 0


Query: 4   LSFSDDPACLFVTNPDVFDPFSPTRSLSQVLNLMDQFMEDPFLAASRGVGAGSRRGWDVR 63
           LS S DP   F  N  VFDPFS TRSLSQVLNLMDQFMEDPFLAASRGVGAGSRRGWDV+
Sbjct: 62  LSRSRDPYSGFGGN--VFDPFSQTRSLSQVLNLMDQFMEDPFLAASRGVGAGSRRGWDVK 121

Query: 64  EDDDALYLRMDMPGLSKEDVKVSVEQNTLIIKGEAAKESEDESDRRRFSSRLDLPANLYQ 123
           EDD+ LYLRMDMPGL K+DVKVSVEQNTLIIKGEA KESEDE D RRFSSRLDLPANLY+
Sbjct: 122 EDDNCLYLRMDMPGLGKDDVKVSVEQNTLIIKGEAEKESEDEEDLRRFSSRLDLPANLYE 181

Query: 124 LDSIKAEMKNGVLKVAVPKVKEEERKDVKQITVE 158
           L+SIKAEMKNGVLKVAVPKVKEEERKDV+ +TVE
Sbjct: 182 LNSIKAEMKNGVLKVAVPKVKEEERKDVRHVTVE 213

The following BLAST results are available for this feature:

BLAST of Carg26181 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022923528.1	8.6e-69	100.00	small heat shock protein, chloroplastic-like isoform X2 [Cucurbita moschata] >XP...	[more]
XP_022923527.1	3.3e-68	99.28	small heat shock protein, chloroplastic-like isoform X1 [Cucurbita moschata] >XP...	[more]
XP_022965184.1	2.8e-67	98.55	small heat shock protein, chloroplastic-like isoform X2 [Cucurbita maxima]	[more]
XP_022965183.1	1.0e-66	97.83	small heat shock protein, chloroplastic-like isoform X1 [Cucurbita maxima]	[more]
XP_008448861.1	4.4e-65	93.53	PREDICTED: small heat shock protein, chloroplastic isoform X2 [Cucumis melo]	[more]

BLAST of Carg26181 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G25200.1	2.9e-50	67.13	mitochondrion-localized small heat shock protein 23.6	[more]
AT5G51440.1	6.8e-44	61.70	HSP20-like chaperones superfamily protein	[more]
AT4G27670.1	9.3e-25	44.53	heat shock protein 21	[more]
AT1G59860.1	1.5e-14	36.00	HSP20-like chaperones superfamily protein	[more]
AT2G29500.1	2.5e-14	37.41	HSP20-like chaperones superfamily protein	[more]

BLAST of Carg26181 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q96331\|HS23M_ARATH	5.1e-49	67.13	23.6 kDa heat shock protein, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=HS...	[more]
sp\|P11890\|HS23C_OXYRB	1.0e-44	62.67	Small heat shock protein, chloroplastic OS=Oxybasis rubra OX=3560 GN=HSP23 PE=2 ...	[more]
sp\|P46254\|HS22M_PEA	1.2e-42	66.67	Heat shock 22 kDa protein, mitochondrial OS=Pisum sativum OX=3888 GN=HSP22 PE=2 ...	[more]
sp\|Q9FGM9\|HS235_ARATH	1.2e-42	61.70	23.5 kDa heat shock protein, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=HS...	[more]
sp\|Q39818\|HS22M_SOYBN	2.7e-34	70.59	Heat shock 22 kDa protein, mitochondrial OS=Glycine max OX=3847 GN=HSP23.9 PE=2 ...	[more]

BLAST of Carg26181 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BKP4\|A0A1S3BKP4_CUCME	2.9e-65	93.53	small heat shock protein, chloroplastic isoform X2 OS=Cucumis melo OX=3656 GN=LO...	[more]
tr\|A0A1S3BK34\|A0A1S3BK34_CUCME	1.1e-64	92.81	small heat shock protein, chloroplastic isoform X1 OS=Cucumis melo OX=3656 GN=LO...	[more]
tr\|A0A1S3BKN7\|A0A1S3BKN7_CUCME	5.5e-64	91.37	small heat shock protein, chloroplastic-like isoform X2 OS=Cucumis melo OX=3656 ...	[more]
tr\|A0A1S3BKP0\|A0A1S3BKP0_CUCME	2.1e-63	90.65	small heat shock protein, chloroplastic-like isoform X1 OS=Cucumis melo OX=3656 ...	[more]
tr\|A0A0A0L1K2\|A0A0A0L1K2_CUCSA	3.9e-62	85.06	Mitochondrial small heat shock protein OS=Cucumis sativus OX=3659 GN=Csa_3G02009...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR031107	HSP20
IPR008978	HSP20-like_chaperone
IPR002068	A-crystallin/Hsp20_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg26181-RA	Carg26181-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002068	Alpha crystallin/Hsp20 domain	PFAM	PF00011	HSP20	coord: 61..156 e-value: 4.1E-21 score: 74.9
IPR002068	Alpha crystallin/Hsp20 domain	PROSITE	PS01031	SHSP	coord: 51..157 score: 26.879
IPR008978	HSP20-like chaperone	GENE3D	G3DSA:2.60.40.790		coord: 14..156 e-value: 8.0E-30 score: 105.5
IPR008978	HSP20-like chaperone	SUPERFAMILY	SSF49764	HSP20-like chaperones	coord: 26..150
None	No IPR available	PANTHER	PTHR11527:SF136	SUBFAMILY NOT NAMED	coord: 23..157
None	No IPR available	CDD	cd06464	ACD_sHsps-like	coord: 61..142 e-value: 1.28312E-24 score: 91.0764
IPR031107	Small heat shock protein HSP20	PANTHER	PTHR11527	SMALL HEAT-SHOCK PROTEIN HSP20 FAMILY	coord: 23..157

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg26181	CmaCh16G011420	Cucurbita maxima (Rimu)	carcmaB0697
Carg26181	Cp4.1LG14g09450	Cucurbita pepo (Zucchini)	carcpeB0702

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None