Carg26081-RA (mRNA) Silver-seed gourd
The following sequences are available for this feature:
Legend: polypeptideCDSexonthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGCCAGGCCTGGATTGTGTCAACAGCATAATTTATGGTAAGTTTTCCAAAATTGTTATTATACCATGTCTCTAGCTTCAAGGACACATCTCTGCTGGAATTTCTTTGATTTCTGAGTTTACACTTAAAGAGGACAAGAATTTCTCTCATGTGAATAACAAACAGTGCTTTCCCCCCAATGTAATTTAAGGTGCCGGGGATGATCAAGCAACGGTAAGCGAATTCATCCACAACTTCTGCATTGAAAGGAAGATCGACTTAACAAGTTACATTAAGTGGTGGGGGCCCAACAAAAATCGAACGTCTAGTGTTGGATCGAAGTTGTCAGAAGAAGACAAACATAGTAGCGTTGGAGAAGTAGACAGTGAACTCAAAGCTCTTGGACAGACCACCTGTCCCACAGAGCCATATGAGATGCCCTGTTTGGGTACATTACATGGGGTAAAGAAGGTTGCTTCGAAGGTCTCTGCTTTAAGTATTTTGTCACGGTCAGCAGCCTACAAGAGTTTGCAGCAGAAAGCTTTGAAATTAGAGGAAATTAACAATGAGAATGATGAGAACGAAAATAAAAACAGTGTCAACAAGATAGATCATGGGAAAGCTGTTGAAACACATGCAAGTCATGGAGGTGATCCCAGTGAGAAATATGGGGTTGCTTTTGGAGCAAGTGGTGGATTGCCACTTCAGAGAAATATGTTCCCCTTGACTCCATTCTTAACTGCACCTCTTCTTAGCAGTTACAACACTGTTGATCCCTTGGGAGATCCGATTCATTGGACATCGCTCGTTTCTGTTCTTCCTACTGGACTTTCTCGTACTGCCGAGGTTAGCGTATTCACTATCCTTGTTTGGAGTAAAGTAAAGTGAAATTGTTGTGTGAATTTGAGATGGCTTTTAGAAGGATAAAAGTTACTTTTAGCAAAAGAAAATAAATTTTATGGTGCTTGGTTACATATTCAAAGGCAATTTCTGATAATGTTTGTCTCGGCTCCATTATGCAGGTTACAAAGACCGAAACCTCTTCAACTTACACTTTGTTTCGACCGGAGGAATAAAGTTCAAGGAATTTATTATCTCCCCCCCAGGATGGGGTTTGAGTTGAACTTGATTGGACAGCGCTCGATGCTGATATTGCTGGATCCCTAAATGAGAATAAGCTTTAAGGGGTAGAGATTTACATAAATCAAAATATCACAAGAACACGA ATGCCAGGCCTGGATTGTGTCAACAGCATAATTTATGGTGCCGGGGATGATCAAGCAACGGTAAGCGAATTCATCCACAACTTCTGCATTGAAAGGAAGATCGACTTAACAAGTTACATTAAGTGGTGGGGGCCCAACAAAAATCGAACGTCTAGTGTTGGATCGAAGTTGTCAGAAGAAGACAAACATAGTAGCGTTGGAGAAGTAGACAGTGAACTCAAAGCTCTTGGACAGACCACCTGTCCCACAGAGCCATATGAGATGCCCTGTTTGGGTACATTACATGGGGTAAAGAAGGTTGCTTCGAAGGTCTCTGCTTTAAGTATTTTGTCACGGTCAGCAGCCTACAAGAGTTTGCAGCAGAAAGCTTTGAAATTAGAGGAAATTAACAATGAGAATGATGAGAACGAAAATAAAAACAGTGTCAACAAGATAGATCATGGGAAAGCTGTTGAAACACATGCAAGTCATGGAGGTGATCCCAGTGAGAAATATGGGGTTGCTTTTGGAGCAAGTGGTGGATTGCCACTTCAGAGAAATATGTTCCCCTTGACTCCATTCTTAACTGCACCTCTTCTTAGCAGTTACAACACTGTTGATCCCTTGGGAGATCCGATTCATTGGACATCGCTCGTTTCTGTTCTTCCTACTGGACTTTCTCGTACTGCCGAGGTTACAAAGACCGAAACCTCTTCAACTTACACTTTGTTTCGACCGGAGGAATAAAGTTCAAGGAATTTATTATCTCCCCCCCAGGATGGGGTTTGAGTTGAACTTGATTGGACAGCGCTCGATGCTGATATTGCTGGATCCCTAAATGAGAATAAGCTTTAAGGGGTAGAGATTTACATAAATCAAAATATCACAAGAACACGA ATGCCAGGCCTGGATTGTGTCAACAGCATAATTTATGGTGCCGGGGATGATCAAGCAACGGTAAGCGAATTCATCCACAACTTCTGCATTGAAAGGAAGATCGACTTAACAAGTTACATTAAGTGGTGGGGGCCCAACAAAAATCGAACGTCTAGTGTTGGATCGAAGTTGTCAGAAGAAGACAAACATAGTAGCGTTGGAGAAGTAGACAGTGAACTCAAAGCTCTTGGACAGACCACCTGTCCCACAGAGCCATATGAGATGCCCTGTTTGGGTACATTACATGGGGTAAAGAAGGTTGCTTCGAAGGTCTCTGCTTTAAGTATTTTGTCACGGTCAGCAGCCTACAAGAGTTTGCAGCAGAAAGCTTTGAAATTAGAGGAAATTAACAATGAGAATGATGAGAACGAAAATAAAAACAGTGTCAACAAGATAGATCATGGGAAAGCTGTTGAAACACATGCAAGTCATGGAGGTGATCCCAGTGAGAAATATGGGGTTGCTTTTGGAGCAAGTGGTGGATTGCCACTTCAGAGAAATATGTTCCCCTTGACTCCATTCTTAACTGCACCTCTTCTTAGCAGTTACAACACTGTTGATCCCTTGGGAGATCCGATTCATTGGACATCGCTCGTTTCTGTTCTTCCTACTGGACTTTCTCGTACTGCCGAGGTTACAAAGACCGAAACCTCTTCAACTTACACTTTGTTTCGACCGGAGGAATAA MPGLDCVNSIIYGAGDDQATVSEFIHNFCIERKIDLTSYIKWWGPNKNRTSSVGSKLSEEDKHSSVGEVDSELKALGQTTCPTEPYEMPCLGTLHGVKKVASKVSALSILSRSAAYKSLQQKALKLEEINNENDENENKNSVNKIDHGKAVETHASHGGDPSEKYGVAFGASGGLPLQRNMFPLTPFLTAPLLSSYNTVDPLGDPIHWTSLVSVLPTGLSRTAEVTKTETSSTYTLFRPEE
BLAST of Carg26081-RA vs. NCBI nr
Match: XP_023540970.1 (AP2-like ethylene-responsive transcription factor At2g41710 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 409.8 bits (1052), Expect = 6.2e-111 Identity = 241/241 (100.00%), Postives = 241/241 (100.00%), Query Frame = 0
BLAST of Carg26081-RA vs. NCBI nr
Match: XP_022973333.1 (AP2-like ethylene-responsive transcription factor At2g41710 [Cucurbita maxima]) HSP 1 Score: 398.3 bits (1022), Expect = 1.9e-107 Identity = 227/241 (94.19%), Postives = 228/241 (94.61%), Query Frame = 0
BLAST of Carg26081-RA vs. NCBI nr
Match: XP_022983776.1 (AP2-like ethylene-responsive transcription factor At2g41710 [Cucurbita maxima]) HSP 1 Score: 345.9 bits (886), Expect = 1.1e-91 Identity = 199/242 (82.23%), Postives = 210/242 (86.78%), Query Frame = 0
BLAST of Carg26081-RA vs. NCBI nr
Match: XP_022934375.1 (AP2-like ethylene-responsive transcription factor At2g41710 [Cucurbita moschata]) HSP 1 Score: 343.2 bits (879), Expect = 7.2e-91 Identity = 201/242 (83.06%), Postives = 211/242 (87.19%), Query Frame = 0
BLAST of Carg26081-RA vs. NCBI nr
Match: XP_023528603.1 (AP2-like ethylene-responsive transcription factor At2g41710 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 343.2 bits (879), Expect = 7.2e-91 Identity = 201/242 (83.06%), Postives = 211/242 (87.19%), Query Frame = 0
BLAST of Carg26081-RA vs. TAIR10
Match: AT2G41710.3 (Integrase-type DNA-binding superfamily protein) HSP 1 Score: 173.3 bits (438), Expect = 1.8e-43 Identity = 105/249 (42.17%), Postives = 140/249 (56.22%), Query Frame = 0
BLAST of Carg26081-RA vs. Swiss-Prot
Match: sp|Q8GWK2|AP2L4_ARATH (AP2-like ethylene-responsive transcription factor At2g41710 OS=Arabidopsis thaliana OX=3702 GN=At2g41710 PE=2 SV=2) HSP 1 Score: 173.3 bits (438), Expect = 3.2e-42 Identity = 105/249 (42.17%), Postives = 140/249 (56.22%), Query Frame = 0
BLAST of Carg26081-RA vs. TrEMBL
Match: tr|A0A1S3B793|A0A1S3B793_CUCME (AP2-like ethylene-responsive transcription factor At2g41710 OS=Cucumis melo OX=3656 GN=LOC103486931 PE=4 SV=1) HSP 1 Score: 340.1 bits (871), Expect = 4.0e-90 Identity = 204/242 (84.30%), Postives = 211/242 (87.19%), Query Frame = 0
BLAST of Carg26081-RA vs. TrEMBL
Match: tr|A0A0A0LCL8|A0A0A0LCL8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G822440 PE=4 SV=1) HSP 1 Score: 335.5 bits (859), Expect = 9.9e-89 Identity = 211/243 (86.83%), Postives = 219/243 (90.12%), Query Frame = 0
BLAST of Carg26081-RA vs. TrEMBL
Match: tr|A0A1S2XTQ7|A0A1S2XTQ7_CICAR (AP2-like ethylene-responsive transcription factor At2g41710 isoform X1 OS=Cicer arietinum OX=3827 GN=LOC101502947 PE=4 SV=1) HSP 1 Score: 247.3 bits (630), Expect = 3.5e-62 Identity = 132/242 (54.55%), Postives = 159/242 (65.70%), Query Frame = 0
BLAST of Carg26081-RA vs. TrEMBL
Match: tr|A0A2P5A4Q2|A0A2P5A4Q2_PARAD (AP2/ERF transcription factor OS=Parasponia andersonii OX=3476 GN=PanERF12 PE=4 SV=1) HSP 1 Score: 245.4 bits (625), Expect = 1.3e-61 Identity = 134/244 (54.92%), Postives = 158/244 (64.75%), Query Frame = 0
BLAST of Carg26081-RA vs. TrEMBL
Match: tr|A0A2P5EN46|A0A2P5EN46_9ROSA (AP2/ERF transcription factor OS=Trema orientalis OX=63057 GN=TorERF12 PE=4 SV=1) HSP 1 Score: 241.9 bits (616), Expect = 1.5e-60 Identity = 135/244 (55.33%), Postives = 153/244 (62.70%), Query Frame = 0
The following BLAST results are available for this feature:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
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