Carg25964-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg25964-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Unknown protein
Location	Cucurbita_argyrosperma_scaffold_284 : 133418 .. 138688 (-)
Sequence length	210

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAAGTCAAAAAGCTTTGGTTTCTGGGAGGGGCACTTTAAAGTTCTCCTTATTTATTTATTATGGTTATTATTTACTTAAGTTAAATATATTCTTTTCAATTGTTTCAATCTAATGCATTCAACATAAGAATATGAGAACTTCGATGAAATTCAGAGAGGAAAATGGCATATATGTTGAATGCGTTGATGGGGCATAGTTTTCTCTTTGAAAAAAAAAGTCACTTTACTGCTCGGTGCAATTGCAGTTTTTATGTGCTATTGCCGTCTCAGGTGGGAAGATCAGTTTTCCACCCTAAATACACTCATTTTGATGTACTTCCTATACATTGATATTCTACTATGACTAGGACAAGTTGAAAAAAAAAAAAAAAAAAAACAAGGTTGGCAAAACTGTGTGGATGGTTGATCTTTCTTCTCCATCTCTCATAATATCTGCAACCTAGAAGTGAGATCAATGAAGGTCTCTTCTCTGCAGGGAATTGTCAGACCACCCATTGGATGATTGAATCCAAACTCTTCCTCGGCCCTTTTTAGTAGATTTAGAAAAGAAGGATGGTTCAAATAAGAAATTGGAACCACAAATCTCCTTGTTTGGATTTCCCCCACATAGACTGCAATATGTCCTTTGGGAATATTGGACTTTACTTTTGAAGAAGGCGCCCTGCATTTTGAGAATTTGCTTGGTATGAAGAAGAATTGAAGGCAAACGGATTCCCATTTTTAAATCTTCTTGAAGTGAAAGAAGAACAAGCAACTGTCAGTCGTTGTGGCCGATGTTGATCTTGAAGTAAAAATCTGCAATACTTGGGATGATAATCTCTCTGCAGTTCGAGTTGGAAGATGGTTGTTCATTTGGTTTGAATGTATATATATAGAGTGAGGAAGAGGAGGTGTGAACAAAAGAATATCAAAGTAGGTGTCTGGTTGGACCTACATCATCAAGGCTCACATGGGGTTGCAAAATTGGTTGAAACACACTCGTTTTCTCATTTGGCGCAGCTTCTGATGGTACACATCCACTGTTTAATGGGAAGATATTAGAGAAGAAAACAAGTGGTCAAGGAAAACCAAAAATCAAATGCTGTGACCAAGAAAATAAACAGACAAAAAAAATCAATGTGATAAGAAATATTATTAAAACTTTACTGGTTTGTATCCATCAGATGCCCCCACCGAACAGGAAACCGAGTTTTCTTCGTCTACAAGCACTGTCCTCAACATCAAGAGTTATTGGAGTAAGCTTGCACCATGCTTGATGTTTTCATATTGTTCAGTTGGTCCATAACTTAAGAATGACAACCTTTTGAAAAGCAATAGTTTAGGAAATGGTCAATCTATATTTTTAATTATTGACTAAAAAATGCTTGATCCCTAATAGATGCTTATTTTTTTCTTATTAAGATCTCATTAAATGTTCAGAACTTGGACATCCACTCATTGAGAGGGAATGTTGCCGGTCAGCTTTCATGTGAACTTCAAAAAGGCAGGATCTCTCAATCTGCATCTGGTAAAATTTGCTCCACTTCCAGCTATGTTATAACCATCTTGAATATGTTTGTTGTCTAGGCTTATCGATTTGGTTTGTGAGACTCCAATAGCTGTACTAATATGCATCAAAGATTAGCTGCCAACTTTGGTTTTGTTCATATCTTGAGCCAGTTGGTTTAAATTTTTTTAATTATATAGGCTTTCTTTCCATTTAGACAAACAATATATTCCATTAAATGAATGTTTCCCTGCTATTCGTTGGCATGGCAAAAATTATTAGGGGGACGGTTTTGTTGTCTCAGCCATTTCTCTAACAAAAATATTATCGATTGCTTATGTAATGTGCTTAACTTAACTAACGAGCTTTCACTCGGCCACAATTTTCAGCTCAAATGGGTCCAGTATTTGCGAGGTTTACCAAAATGTTAGGTGACTTTGTTTACCCGATATTATTTTCCAAGTAGCTGAAGATTATTATCTAGAATACAATACCATGTGACACAGTATACTTCACAAGTACATGCCTCCTAGTTGGCCCCATTCGTAGATGTCTCACCACTCATTTCTTAGAGCAAGCTAGTGGCCACGTCTCCCTTTTTAATCTATATATACATGTTTTCAATTCCCAAGCAACTCAATTCTCAAACTTCCAGTTCACCACCAAGTTTTCCCTTTTTCTCTCGACTGCTATTGTGCTACTTCTACATTCCAAAATTCAAGACCCTTCAACTTCCTGAGAGAAAAACAAAAAACCATGGGTTTCCATTTGGCGAGAGTGGTAAATGCTGTGCAAAATATTGGACTTTCTTCTCTAACAACACACTACAAATCGTCGGCAATCCGCAAAGGTTATTGTGCAGTTTATGTAGGGGAAAGCAAAAAGAAGCGGTTTGTGATTCCAATTACTTACTTGAACGAGCCATTTTTCAAGGACTTGTTAAGTCGAGTTGGAGAAGAATTTGGTTACAATCATCCTATGGGAGGCCTTACTATTCCTTGCAGCGATGATACATTCCTTCATCTCATCTCTCGTCTAAGTGAGCCATGAGAAAATATATATTTGTTAGATTAGTCACTTGTAGATCAGTGTCATTCCGTTGTACACTTTTTCGAGGGAGAGTCGAATTACCTCCCCAGTTGATGTATACAAAATTAAGCTTGCTAATGTCAGAAAAGGAAGAGGTTATTTCCATGGAAGTACTTCCCTTTATGCAGTCACAGTTCAATTCATTGGTTAATATTTACCTAAGAACATCAAATTCAAGTTGCCAAATACAAATATAAACTGTCATTATGTCATTCATTATGACGGAAGAATGCTAATCCTTTTCTTTTTTTTTTTTTTTTTTTTGTCAACCTTTCCCATTTTCATGTTATATTTGAGGATGTAGTTCAACGTGAATGGTTTATTTTCAATTCTTAATCTACGTTCATTCATCATTTTTCTAAACAGTTGAATTTGTAACAGAGATTTTGAGCAATCAAGGACCATTGAGATATCAATTCCATTTTTTACATGGACTTCATTTTGGCAAACAGTTCTAGAGAATTATTGATTGCATCATAAGTTTGATCATTTAACTATGGCATATTCCTTCCTGATACTTGGCTCCAGCATGACAGCCAAATACAACAAAACCGTTATAGGATCAAATCTAGAGTTAGTAACTAGAATAGTTTGTTTAGATGACTTTTGGCCTAGTATCTCATTTCATTGTATGAACTGGCAATACAGATGAAAATTTCTTGTATTAGCTGACTAAATTTGGTATTAAAGTCAAGTCTGACATTGATGGGTAGCTTGGTGGAACAAGTTCCTGTGCTGTGGTTACTCTGGTTTTCTTTCATTATCATTGGAACCTTCCTTTGTCATTCAAGAAACATGATGACATTAGCTGACAAGAATTTTAATTTCAGAGCATTCATGGATATAATAGCTTATAAAGATCTTGTGGAGGAGACGCGCTAAAGGTAGGTAGACACTGCTTTGCCTTCAGCTGTTTATTCCTGTTACACCTAGTGAAACGATTTATTTAGTACAGAACTTCATCAAAGCATGACATCTCCATCTAATATTTCCATCTTGAAAGCAGCAAGTTTATTTCATGCATCTTCTGCTCAACTCCGATAACATATATCTCTTCACAAATCACTACATTTGAAAAGGGTAATATTCTCTCTGTAATTCATTTTTGATTTCTTGGCCTTTGCTGATATATATATATCTCTTGGCACAAGCAAGCAAGCTAAAACGTGTATCTTTATTTCCATTCTAAGCATTCTGTTTGTGGAATCATATTCATATGGTTCTAGAGGGCACATGCAACATGATGTCCTAAAAGTTGAGTTTGCTATTAAATTAGTTCTAATTTTAAAACACCTTTTTAAGATCAAATTGTTTCTTGTAAGAATAGCTATAGATGTCTGGAAGCTTATCCACTATTCTAAGGCCATCTATTTATAATGAACAATGGAGCCTTCCCTAATTTAAACTGGAGTTTGTTCATAACAGCTCAAGCCCACCCCACTGCAAACAGTATTGTCCTATTTAGACTTTTCATTCTGGGATTTTCCTCGAGGTTTTAAAACGCGTCTGTTAGGGAGAGGTTTCTACACCCTTATAAGAAATGTTTCGTTCCCCTCTCCAACCGATAAGAGATCTCACAATCCACCCCCCTTGGGGGCTCAATGTTCTCGCTGGCACACCACTCGGTGTCTAGCTTTAATACCATTTGTAACCGCCCAAGCTCACTTCTAGCAGATATTGTCCTATTTGAGATTTCCCTTCTAGGATTCCCCTCAAAAATTTTTAAATGTGTCTATTAGGGAGAGGTTTTCACACCCTTATAAGGAATCTTCGTTCCCCTCTCCAATCGATGTGGGATCTCACACCAAACTTGTAGGTTTGCTATGTTTTTAACCCATACACATGACATTTACTGTATTTGGCTGAAAATTCCATGTGGCTCGTCAGACAAGTATGTCTCACACCTCGTCCCATATAATTAATGCATTTAATAGCATTTCAATTTTTTTTATCAATATATTGAGTCATTCTTTGCATTTCTTAGCACTAAATATCTCCCTCCGATCATAATTCATAATCATTCTCAAAACTCTCTATTTGGACAGACAACCATGGAGATTTGCTGAGCTCATCCTCCATTGATCAGGAAATCATGTGGTTCATACAGCTGCATAACTCCCCATACCCTCTTTTGAGTCTATGCAGAGTAGAAAGAAGATTTTTCAACTTACTTCACCAACTACCACCGTGAGTTCATATGGTCCCAACTTTCTGCGTTTAGTGTATTTCTGCTTCTTTTGCTACTTTATTATAGAAAAAAAAAATGGCATTGCTTGAGATGAAAGACAAATATCCTTTTTATATGTTTCAATCAGCAGTAAAAAGAGTCAAAATCATGTAGCATTCATTTCCACATGAGAGAGAATCTGCTTTCTGTTGCCTTTGTATGTAAACGTTAGCTCATACAATTGTCTTTTTTGGCTTGCTTTCAATTTGCACCCACTCCCAGTTGCTTTCCTTGGACACCATTCACATATTTGGTCTCTCCCCACCCTCCATATAACCAAGAGCCTCCTACCTGTGCCCCTAAATTTAAGGTTCTCACCCACCTAGCTGTCCCTTTCCAATCTTCTGCTGGTCCTCAAATTGAGTAATGGCTGATTCTGTAGGACACTGTTCAGGACCAAAATGGGACACTGATCCCCTCTCAGCCCTGAGCCCAAACTGCAAGTTGAAAGACAGAGCCATGTGA

mRNA sequence

ATGACAAGTCAAAAAGCTTTGATCTCATTAAATGTTCAGAACTTGGACATCCACTCATTGAGAGGGAATGTTGCCGGTCAGCTTTCATGTGAACTTCAAAAAGGCAGGATCTCTCAATCTGCATCTGGACACTGTTCAGGACCAAAATGGGACACTGATCCCCTCTCAGCCCTGAGCCCAAACTGCAAGTTGAAAGACAGAGCCATGTGA

Coding sequence (CDS)

ATGACAAGTCAAAAAGCTTTGATCTCATTAAATGTTCAGAACTTGGACATCCACTCATTGAGAGGGAATGTTGCCGGTCAGCTTTCATGTGAACTTCAAAAAGGCAGGATCTCTCAATCTGCATCTGGACACTGTTCAGGACCAAAATGGGACACTGATCCCCTCTCAGCCCTGAGCCCAAACTGCAAGTTGAAAGACAGAGCCATGTGA

Protein sequence

MTSQKALISLNVQNLDIHSLRGNVAGQLSCELQKGRISQSASGHCSGPKWDTDPLSALSPNCKLKDRAM

Homology

[Close]

BLAST of Carg25964-RA vs. NCBI nr
Match: XP_022944356.1 (uncharacterized protein LOC111448820 isoform X3 [Cucurbita moschata])

HSP 1 Score: 71.2 bits (173), Expect = 1.5e-09
Identity = 37/41 (90.24%), Postives = 38/41 (92.68%), Query Frame = 0


Query: 2  TSQKALISLNVQNLDIHSLRGNVAGQLSCELQKGRISQSAS 43
          TS+   ISLNVQNLDIHSLRGNVAGQLSCELQKGRISQSAS
Sbjct: 19 TSRVIGISLNVQNLDIHSLRGNVAGQLSCELQKGRISQSAS 59

[Close]

BLAST of Carg25964-RA vs. NCBI nr
Match: XP_022944354.1 (uncharacterized protein LOC111448820 isoform X1 [Cucurbita moschata])

HSP 1 Score: 71.2 bits (173), Expect = 1.5e-09
Identity = 37/41 (90.24%), Postives = 38/41 (92.68%), Query Frame = 0


Query: 2  TSQKALISLNVQNLDIHSLRGNVAGQLSCELQKGRISQSAS 43
          TS+   ISLNVQNLDIHSLRGNVAGQLSCELQKGRISQSAS
Sbjct: 19 TSRVIGISLNVQNLDIHSLRGNVAGQLSCELQKGRISQSAS 59

[Close]

BLAST of Carg25964-RA vs. NCBI nr
Match: XP_022944355.1 (uncharacterized protein LOC111448820 isoform X2 [Cucurbita moschata])

HSP 1 Score: 60.1 bits (144), Expect = 3.5e-06
Identity = 29/31 (93.55%), Postives = 30/31 (96.77%), Query Frame = 0


Query: 12 VQNLDIHSLRGNVAGQLSCELQKGRISQSAS 43
          + NLDIHSLRGNVAGQLSCELQKGRISQSAS
Sbjct: 23 IGNLDIHSLRGNVAGQLSCELQKGRISQSAS 53

The following BLAST results are available for this feature:

BLAST of Carg25964-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022944356.1	1.5e-09	90.24	uncharacterized protein LOC111448820 isoform X3 [Cucurbita moschata]	[more]
XP_022944354.1	1.5e-09	90.24	uncharacterized protein LOC111448820 isoform X1 [Cucurbita moschata]	[more]
XP_022944355.1	3.5e-06	93.55	uncharacterized protein LOC111448820 isoform X2 [Cucurbita moschata]	[more]

BLAST of Carg25964-RA vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg25964-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg25964-RA vs. TrEMBL


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg25964	Carg25964	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg25964-RA	Carg25964-RA-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg25964-RA.CDS.3	Carg25964-RA.CDS.3	CDS
Carg25964-RA.CDS.2	Carg25964-RA.CDS.2	CDS
Carg25964-RA.CDS.1	Carg25964-RA.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg25964-RA.exon.3	Carg25964-RA.exon.3	exon
Carg25964-RA.exon.2	Carg25964-RA.exon.2	exon
Carg25964-RA.exon.1	Carg25964-RA.exon.1	exon