Carg25964 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg25964
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Unknown protein
Location	Cucurbita_argyrosperma_scaffold_284 : 133418 .. 138688 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAAGTCAAAAAGCTTTGGTTTCTGGGAGGGGCACTTTAAAGTTCTCCTTATTTATTTATTATGGTTATTATTTACTTAAGTTAAATATATTCTTTTCAATTGTTTCAATCTAATGCATTCAACATAAGAATATGAGAACTTCGATGAAATTCAGAGAGGAAAATGGCATATATGTTGAATGCGTTGATGGGGCATAGTTTTCTCTTTGAAAAAAAAAGTCACTTTACTGCTCGGTGCAATTGCAGTTTTTATGTGCTATTGCCGTCTCAGGTGGGAAGATCAGTTTTCCACCCTAAATACACTCATTTTGATGTACTTCCTATACATTGATATTCTACTATGACTAGGACAAGTTGAAAAAAAAAAAAAAAAAAAACAAGGTTGGCAAAACTGTGTGGATGGTTGATCTTTCTTCTCCATCTCTCATAATATCTGCAACCTAGAAGTGAGATCAATGAAGGTCTCTTCTCTGCAGGGAATTGTCAGACCACCCATTGGATGATTGAATCCAAACTCTTCCTCGGCCCTTTTTAGTAGATTTAGAAAAGAAGGATGGTTCAAATAAGAAATTGGAACCACAAATCTCCTTGTTTGGATTTCCCCCACATAGACTGCAATATGTCCTTTGGGAATATTGGACTTTACTTTTGAAGAAGGCGCCCTGCATTTTGAGAATTTGCTTGGTATGAAGAAGAATTGAAGGCAAACGGATTCCCATTTTTAAATCTTCTTGAAGTGAAAGAAGAACAAGCAACTGTCAGTCGTTGTGGCCGATGTTGATCTTGAAGTAAAAATCTGCAATACTTGGGATGATAATCTCTCTGCAGTTCGAGTTGGAAGATGGTTGTTCATTTGGTTTGAATGTATATATATAGAGTGAGGAAGAGGAGGTGTGAACAAAAGAATATCAAAGTAGGTGTCTGGTTGGACCTACATCATCAAGGCTCACATGGGGTTGCAAAATTGGTTGAAACACACTCGTTTTCTCATTTGGCGCAGCTTCTGATGGTACACATCCACTGTTTAATGGGAAGATATTAGAGAAGAAAACAAGTGGTCAAGGAAAACCAAAAATCAAATGCTGTGACCAAGAAAATAAACAGACAAAAAAAATCAATGTGATAAGAAATATTATTAAAACTTTACTGGTTTGTATCCATCAGATGCCCCCACCGAACAGGAAACCGAGTTTTCTTCGTCTACAAGCACTGTCCTCAACATCAAGAGTTATTGGAGTAAGCTTGCACCATGCTTGATGTTTTCATATTGTTCAGTTGGTCCATAACTTAAGAATGACAACCTTTTGAAAAGCAATAGTTTAGGAAATGGTCAATCTATATTTTTAATTATTGACTAAAAAATGCTTGATCCCTAATAGATGCTTATTTTTTTCTTATTAAGATCTCATTAAATGTTCAGAACTTGGACATCCACTCATTGAGAGGGAATGTTGCCGGTCAGCTTTCATGTGAACTTCAAAAAGGCAGGATCTCTCAATCTGCATCTGGTAAAATTTGCTCCACTTCCAGCTATGTTATAACCATCTTGAATATGTTTGTTGTCTAGGCTTATCGATTTGGTTTGTGAGACTCCAATAGCTGTACTAATATGCATCAAAGATTAGCTGCCAACTTTGGTTTTGTTCATATCTTGAGCCAGTTGGTTTAAATTTTTTTAATTATATAGGCTTTCTTTCCATTTAGACAAACAATATATTCCATTAAATGAATGTTTCCCTGCTATTCGTTGGCATGGCAAAAATTATTAGGGGGACGGTTTTGTTGTCTCAGCCATTTCTCTAACAAAAATATTATCGATTGCTTATGTAATGTGCTTAACTTAACTAACGAGCTTTCACTCGGCCACAATTTTCAGCTCAAATGGGTCCAGTATTTGCGAGGTTTACCAAAATGTTAGGTGACTTTGTTTACCCGATATTATTTTCCAAGTAGCTGAAGATTATTATCTAGAATACAATACCATGTGACACAGTATACTTCACAAGTACATGCCTCCTAGTTGGCCCCATTCGTAGATGTCTCACCACTCATTTCTTAGAGCAAGCTAGTGGCCACGTCTCCCTTTTTAATCTATATATACATGTTTTCAATTCCCAAGCAACTCAATTCTCAAACTTCCAGTTCACCACCAAGTTTTCCCTTTTTCTCTCGACTGCTATTGTGCTACTTCTACATTCCAAAATTCAAGACCCTTCAACTTCCTGAGAGAAAAACAAAAAACCATGGGTTTCCATTTGGCGAGAGTGGTAAATGCTGTGCAAAATATTGGACTTTCTTCTCTAACAACACACTACAAATCGTCGGCAATCCGCAAAGGTTATTGTGCAGTTTATGTAGGGGAAAGCAAAAAGAAGCGGTTTGTGATTCCAATTACTTACTTGAACGAGCCATTTTTCAAGGACTTGTTAAGTCGAGTTGGAGAAGAATTTGGTTACAATCATCCTATGGGAGGCCTTACTATTCCTTGCAGCGATGATACATTCCTTCATCTCATCTCTCGTCTAAGTGAGCCATGAGAAAATATATATTTGTTAGATTAGTCACTTGTAGATCAGTGTCATTCCGTTGTACACTTTTTCGAGGGAGAGTCGAATTACCTCCCCAGTTGATGTATACAAAATTAAGCTTGCTAATGTCAGAAAAGGAAGAGGTTATTTCCATGGAAGTACTTCCCTTTATGCAGTCACAGTTCAATTCATTGGTTAATATTTACCTAAGAACATCAAATTCAAGTTGCCAAATACAAATATAAACTGTCATTATGTCATTCATTATGACGGAAGAATGCTAATCCTTTTCTTTTTTTTTTTTTTTTTTTTGTCAACCTTTCCCATTTTCATGTTATATTTGAGGATGTAGTTCAACGTGAATGGTTTATTTTCAATTCTTAATCTACGTTCATTCATCATTTTTCTAAACAGTTGAATTTGTAACAGAGATTTTGAGCAATCAAGGACCATTGAGATATCAATTCCATTTTTTACATGGACTTCATTTTGGCAAACAGTTCTAGAGAATTATTGATTGCATCATAAGTTTGATCATTTAACTATGGCATATTCCTTCCTGATACTTGGCTCCAGCATGACAGCCAAATACAACAAAACCGTTATAGGATCAAATCTAGAGTTAGTAACTAGAATAGTTTGTTTAGATGACTTTTGGCCTAGTATCTCATTTCATTGTATGAACTGGCAATACAGATGAAAATTTCTTGTATTAGCTGACTAAATTTGGTATTAAAGTCAAGTCTGACATTGATGGGTAGCTTGGTGGAACAAGTTCCTGTGCTGTGGTTACTCTGGTTTTCTTTCATTATCATTGGAACCTTCCTTTGTCATTCAAGAAACATGATGACATTAGCTGACAAGAATTTTAATTTCAGAGCATTCATGGATATAATAGCTTATAAAGATCTTGTGGAGGAGACGCGCTAAAGGTAGGTAGACACTGCTTTGCCTTCAGCTGTTTATTCCTGTTACACCTAGTGAAACGATTTATTTAGTACAGAACTTCATCAAAGCATGACATCTCCATCTAATATTTCCATCTTGAAAGCAGCAAGTTTATTTCATGCATCTTCTGCTCAACTCCGATAACATATATCTCTTCACAAATCACTACATTTGAAAAGGGTAATATTCTCTCTGTAATTCATTTTTGATTTCTTGGCCTTTGCTGATATATATATATCTCTTGGCACAAGCAAGCAAGCTAAAACGTGTATCTTTATTTCCATTCTAAGCATTCTGTTTGTGGAATCATATTCATATGGTTCTAGAGGGCACATGCAACATGATGTCCTAAAAGTTGAGTTTGCTATTAAATTAGTTCTAATTTTAAAACACCTTTTTAAGATCAAATTGTTTCTTGTAAGAATAGCTATAGATGTCTGGAAGCTTATCCACTATTCTAAGGCCATCTATTTATAATGAACAATGGAGCCTTCCCTAATTTAAACTGGAGTTTGTTCATAACAGCTCAAGCCCACCCCACTGCAAACAGTATTGTCCTATTTAGACTTTTCATTCTGGGATTTTCCTCGAGGTTTTAAAACGCGTCTGTTAGGGAGAGGTTTCTACACCCTTATAAGAAATGTTTCGTTCCCCTCTCCAACCGATAAGAGATCTCACAATCCACCCCCCTTGGGGGCTCAATGTTCTCGCTGGCACACCACTCGGTGTCTAGCTTTAATACCATTTGTAACCGCCCAAGCTCACTTCTAGCAGATATTGTCCTATTTGAGATTTCCCTTCTAGGATTCCCCTCAAAAATTTTTAAATGTGTCTATTAGGGAGAGGTTTTCACACCCTTATAAGGAATCTTCGTTCCCCTCTCCAATCGATGTGGGATCTCACACCAAACTTGTAGGTTTGCTATGTTTTTAACCCATACACATGACATTTACTGTATTTGGCTGAAAATTCCATGTGGCTCGTCAGACAAGTATGTCTCACACCTCGTCCCATATAATTAATGCATTTAATAGCATTTCAATTTTTTTTATCAATATATTGAGTCATTCTTTGCATTTCTTAGCACTAAATATCTCCCTCCGATCATAATTCATAATCATTCTCAAAACTCTCTATTTGGACAGACAACCATGGAGATTTGCTGAGCTCATCCTCCATTGATCAGGAAATCATGTGGTTCATACAGCTGCATAACTCCCCATACCCTCTTTTGAGTCTATGCAGAGTAGAAAGAAGATTTTTCAACTTACTTCACCAACTACCACCGTGAGTTCATATGGTCCCAACTTTCTGCGTTTAGTGTATTTCTGCTTCTTTTGCTACTTTATTATAGAAAAAAAAAATGGCATTGCTTGAGATGAAAGACAAATATCCTTTTTATATGTTTCAATCAGCAGTAAAAAGAGTCAAAATCATGTAGCATTCATTTCCACATGAGAGAGAATCTGCTTTCTGTTGCCTTTGTATGTAAACGTTAGCTCATACAATTGTCTTTTTTGGCTTGCTTTCAATTTGCACCCACTCCCAGTTGCTTTCCTTGGACACCATTCACATATTTGGTCTCTCCCCACCCTCCATATAACCAAGAGCCTCCTACCTGTGCCCCTAAATTTAAGGTTCTCACCCACCTAGCTGTCCCTTTCCAATCTTCTGCTGGTCCTCAAATTGAGTAATGGCTGATTCTGTAGGACACTGTTCAGGACCAAAATGGGACACTGATCCCCTCTCAGCCCTGAGCCCAAACTGCAAGTTGAAAGACAGAGCCATGTGA

mRNA sequence

ATGACAAGTCAAAAAGCTTTGATCTCATTAAATGTTCAGAACTTGGACATCCACTCATTGAGAGGGAATGTTGCCGGTCAGCTTTCATGTGAACTTCAAAAAGGCAGGATCTCTCAATCTGCATCTGGACACTGTTCAGGACCAAAATGGGACACTGATCCCCTCTCAGCCCTGAGCCCAAACTGCAAGTTGAAAGACAGAGCCATGTGA

Coding sequence (CDS)

ATGACAAGTCAAAAAGCTTTGATCTCATTAAATGTTCAGAACTTGGACATCCACTCATTGAGAGGGAATGTTGCCGGTCAGCTTTCATGTGAACTTCAAAAAGGCAGGATCTCTCAATCTGCATCTGGACACTGTTCAGGACCAAAATGGGACACTGATCCCCTCTCAGCCCTGAGCCCAAACTGCAAGTTGAAAGACAGAGCCATGTGA

Protein sequence

MTSQKALISLNVQNLDIHSLRGNVAGQLSCELQKGRISQSASGHCSGPKWDTDPLSALSPNCKLKDRAM

Homology

[Close]

BLAST of Carg25964 vs. NCBI nr
Match: XP_022944356.1 (uncharacterized protein LOC111448820 isoform X3 [Cucurbita moschata])

HSP 1 Score: 71.2 bits (173), Expect = 1.5e-09
Identity = 37/41 (90.24%), Postives = 38/41 (92.68%), Query Frame = 0


Query: 2  TSQKALISLNVQNLDIHSLRGNVAGQLSCELQKGRISQSAS 43
          TS+   ISLNVQNLDIHSLRGNVAGQLSCELQKGRISQSAS
Sbjct: 19 TSRVIGISLNVQNLDIHSLRGNVAGQLSCELQKGRISQSAS 59

[Close]

BLAST of Carg25964 vs. NCBI nr
Match: XP_022944354.1 (uncharacterized protein LOC111448820 isoform X1 [Cucurbita moschata])

HSP 1 Score: 71.2 bits (173), Expect = 1.5e-09
Identity = 37/41 (90.24%), Postives = 38/41 (92.68%), Query Frame = 0


Query: 2  TSQKALISLNVQNLDIHSLRGNVAGQLSCELQKGRISQSAS 43
          TS+   ISLNVQNLDIHSLRGNVAGQLSCELQKGRISQSAS
Sbjct: 19 TSRVIGISLNVQNLDIHSLRGNVAGQLSCELQKGRISQSAS 59

[Close]

BLAST of Carg25964 vs. NCBI nr
Match: XP_022944355.1 (uncharacterized protein LOC111448820 isoform X2 [Cucurbita moschata])

HSP 1 Score: 60.1 bits (144), Expect = 3.5e-06
Identity = 29/31 (93.55%), Postives = 30/31 (96.77%), Query Frame = 0


Query: 12 VQNLDIHSLRGNVAGQLSCELQKGRISQSAS 43
          + NLDIHSLRGNVAGQLSCELQKGRISQSAS
Sbjct: 23 IGNLDIHSLRGNVAGQLSCELQKGRISQSAS 53

The following BLAST results are available for this feature:

BLAST of Carg25964 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022944356.1	1.5e-09	90.24	uncharacterized protein LOC111448820 isoform X3 [Cucurbita moschata]	[more]
XP_022944354.1	1.5e-09	90.24	uncharacterized protein LOC111448820 isoform X1 [Cucurbita moschata]	[more]
XP_022944355.1	3.5e-06	93.55	uncharacterized protein LOC111448820 isoform X2 [Cucurbita moschata]	[more]

BLAST of Carg25964 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg25964 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg25964 vs. TrEMBL


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg25964-RA	Carg25964-RA	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg25964	CmoCh20G008040	Cucurbita moschata (Rifu)	carcmoB0584
Carg25964	Cp4.1LG16g02930	Cucurbita pepo (Zucchini)	carcpeB0605

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg25964	Watermelon (97103) v2	carwmbB0454
Carg25964	Wax gourd	carwgoB0518
Carg25964	Silver-seed gourd	carcarB443
Carg25964	Cucumber (Gy14) v2	carcgybB0439
Carg25964	Cucurbita maxima (Rimu)	carcmaB0599
Carg25964	Cucurbita maxima (Rimu)	carcmaB0600
Carg25964	Cucurbita moschata (Rifu)	carcmoB0585
Carg25964	Cucurbita pepo (Zucchini)	carcpeB0606
Carg25964	Wild cucumber (PI 183967)	carcpiB0468
Carg25964	Cucumber (Chinese Long) v2	carcuB0463
Carg25964	Cucumber (Chinese Long) v3	carcucB0463
Carg25964	Bottle gourd (USVL1VR-Ls)	carlsiB390
Carg25964	Watermelon (Charleston Gray)	carwcgB0422
Carg25964	Watermelon (97103) v1	carwmB0427