Carg25840-RA (mRNA) Silver-seed gourd
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGACAACCTCCTCCTCCTCCTCATCCTCCTCCTCCACCTCCTCCGATTCCTCCTTCTCGGCCAACCCCTCCCGCCGCCCTGAGAAGATCAAAGGCCCCTGGAGTGCGGAGGAGGATCGGATTCTGATCCATCTCGTCGACCGCTATGGACCCCGAAACTGGTCCTTGATTAGCCGTTACATTAAAGGCCGCTCGGGGAAGTCCTGCCGTCTCCGGTGGTGTAATCAGTTGAGTCCAAACGTTGAGCACCGGCCGTTTTCCGCCACGGAGGATGAGACGATTTTAGCGGCTCATGCCCGGTTCGGGAACCGGTGGGCTACCATTGCCCGGTTACTTCCAGGCCGGACCGATAATGCCGTTAAGAATCACTGGAACTCCACGCTTAAGCGAAGAGCAAGACACCAACAACATCGTTTAGCAATTGACGGAATTACCCCTGACAATCATGCCAATGCCGTGATTGATTCTGATTTGAAACTCTCCGTACCGTTAGAGGATGACCCATTGACTGCGTTGACTCTAGCACCGCCGGGAATCAGCGGCGGAGTCGTGGCGGAGGAGCGGCGGATTGAGAGTTTTCCGGCGGGGTTTTGGGATGCAATGAGGGATGTGGTAGCAAGGGAGGTGAGAGAGTACATGACGACGACGTTTTTGGAAAATCAAGAGTTTCATTAA ATGACAACCTCCTCCTCCTCCTCATCCTCCTCCTCCACCTCCTCCGATTCCTCCTTCTCGGCCAACCCCTCCCGCCGCCCTGAGAAGATCAAAGGCCCCTGGAGTGCGGAGGAGGATCGGATTCTGATCCATCTCGTCGACCGCTATGGACCCCGAAACTGGTCCTTGATTAGCCGTTACATTAAAGGCCGCTCGGGGAAGTCCTGCCGTCTCCGGTGGTGTAATCAGTTGAGTCCAAACGTTGAGCACCGGCCGTTTTCCGCCACGGAGGATGAGACGATTTTAGCGGCTCATGCCCGGTTCGGGAACCGGTGGGCTACCATTGCCCGGTTACTTCCAGGCCGGACCGATAATGCCGTTAAGAATCACTGGAACTCCACGCTTAAGCGAAGAGCAAGACACCAACAACATCGTTTAGCAATTGACGGAATTACCCCTGACAATCATGCCAATGCCGTGATTGATTCTGATTTGAAACTCTCCGTACCGTTAGAGGATGACCCATTGACTGCGTTGACTCTAGCACCGCCGGGAATCAGCGGCGGAGTCGTGGCGGAGGAGCGGCGGATTGAGAGTTTTCCGGCGGGGTTTTGGGATGCAATGAGGGATGTGGTAGCAAGGGAGGTGAGAGAGTACATGACGACGACGTTTTTGGAAAATCAAGAGTTTCATTAA ATGACAACCTCCTCCTCCTCCTCATCCTCCTCCTCCACCTCCTCCGATTCCTCCTTCTCGGCCAACCCCTCCCGCCGCCCTGAGAAGATCAAAGGCCCCTGGAGTGCGGAGGAGGATCGGATTCTGATCCATCTCGTCGACCGCTATGGACCCCGAAACTGGTCCTTGATTAGCCGTTACATTAAAGGCCGCTCGGGGAAGTCCTGCCGTCTCCGGTGGTGTAATCAGTTGAGTCCAAACGTTGAGCACCGGCCGTTTTCCGCCACGGAGGATGAGACGATTTTAGCGGCTCATGCCCGGTTCGGGAACCGGTGGGCTACCATTGCCCGGTTACTTCCAGGCCGGACCGATAATGCCGTTAAGAATCACTGGAACTCCACGCTTAAGCGAAGAGCAAGACACCAACAACATCGTTTAGCAATTGACGGAATTACCCCTGACAATCATGCCAATGCCGTGATTGATTCTGATTTGAAACTCTCCGTACCGTTAGAGGATGACCCATTGACTGCGTTGACTCTAGCACCGCCGGGAATCAGCGGCGGAGTCGTGGCGGAGGAGCGGCGGATTGAGAGTTTTCCGGCGGGGTTTTGGGATGCAATGAGGGATGTGGTAGCAAGGGAGGTGAGAGAGTACATGACGACGACGTTTTTGGAAAATCAAGAGTTTCATTAA MTTSSSSSSSSSTSSDSSFSANPSRRPEKIKGPWSAEEDRILIHLVDRYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPNVEHRPFSATEDETILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKRRARHQQHRLAIDGITPDNHANAVIDSDLKLSVPLEDDPLTALTLAPPGISGGVVAEERRIESFPAGFWDAMRDVVAREVREYMTTTFLENQEFH
BLAST of Carg25840-RA vs. NCBI nr
Match: XP_022951647.1 (transcription factor MYB44-like [Cucurbita moschata]) HSP 1 Score: 416.8 bits (1070), Expect = 4.7e-113 Identity = 200/203 (98.52%), Postives = 200/203 (98.52%), Query Frame = 0
BLAST of Carg25840-RA vs. NCBI nr
Match: XP_023002015.1 (transcription factor MYB44-like [Cucurbita maxima]) HSP 1 Score: 406.8 bits (1044), Expect = 4.9e-110 Identity = 195/200 (97.50%), Postives = 196/200 (98.00%), Query Frame = 0
BLAST of Carg25840-RA vs. NCBI nr
Match: XP_023537871.1 (transcription factor MYB44-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 406.4 bits (1043), Expect = 6.4e-110 Identity = 194/203 (95.57%), Postives = 196/203 (96.55%), Query Frame = 0
BLAST of Carg25840-RA vs. NCBI nr
Match: AXF54213.1 (MYB8 [Cucurbita pepo]) HSP 1 Score: 406.4 bits (1043), Expect = 6.4e-110 Identity = 194/203 (95.57%), Postives = 196/203 (96.55%), Query Frame = 0
BLAST of Carg25840-RA vs. NCBI nr
Match: XP_022144294.1 (transcription factor MYB1-like [Momordica charantia]) HSP 1 Score: 350.1 bits (897), Expect = 5.5e-93 Identity = 171/207 (82.61%), Postives = 182/207 (87.92%), Query Frame = 0
BLAST of Carg25840-RA vs. TAIR10
Match: AT4G37260.1 (myb domain protein 73) HSP 1 Score: 189.5 bits (480), Expect = 2.2e-48 Identity = 98/173 (56.65%), Postives = 120/173 (69.36%), Query Frame = 0
BLAST of Carg25840-RA vs. TAIR10
Match: AT5G67300.1 (myb domain protein r1) HSP 1 Score: 187.2 bits (474), Expect = 1.1e-47 Identity = 98/169 (57.99%), Postives = 117/169 (69.23%), Query Frame = 0
BLAST of Carg25840-RA vs. TAIR10
Match: AT2G23290.1 (myb domain protein 70) HSP 1 Score: 179.5 bits (454), Expect = 2.3e-45 Identity = 80/104 (76.92%), Postives = 92/104 (88.46%), Query Frame = 0
BLAST of Carg25840-RA vs. TAIR10
Match: AT3G50060.1 (myb domain protein 77) HSP 1 Score: 177.9 bits (450), Expect = 6.7e-45 Identity = 79/104 (75.96%), Postives = 90/104 (86.54%), Query Frame = 0
BLAST of Carg25840-RA vs. TAIR10
Match: AT3G09230.1 (myb domain protein 1) HSP 1 Score: 159.8 bits (403), Expect = 1.9e-39 Identity = 70/106 (66.04%), Postives = 84/106 (79.25%), Query Frame = 0
BLAST of Carg25840-RA vs. Swiss-Prot
Match: sp|O23160|MYB73_ARATH (Transcription factor MYB73 OS=Arabidopsis thaliana OX=3702 GN=MYB73 PE=1 SV=1) HSP 1 Score: 189.5 bits (480), Expect = 4.0e-47 Identity = 98/173 (56.65%), Postives = 120/173 (69.36%), Query Frame = 0
BLAST of Carg25840-RA vs. Swiss-Prot
Match: sp|Q9FDW1|MYB44_ARATH (Transcription factor MYB44 OS=Arabidopsis thaliana OX=3702 GN=MYB44 PE=1 SV=1) HSP 1 Score: 187.2 bits (474), Expect = 2.0e-46 Identity = 98/169 (57.99%), Postives = 117/169 (69.23%), Query Frame = 0
BLAST of Carg25840-RA vs. Swiss-Prot
Match: sp|Q9SN12|MYB77_ARATH (Transcription factor MYB77 OS=Arabidopsis thaliana OX=3702 GN=MYB77 PE=1 SV=1) HSP 1 Score: 177.9 bits (450), Expect = 1.2e-43 Identity = 79/104 (75.96%), Postives = 90/104 (86.54%), Query Frame = 0
BLAST of Carg25840-RA vs. Swiss-Prot
Match: sp|Q42575|MYB1_ARATH (Transcription factor MYB1 OS=Arabidopsis thaliana OX=3702 GN=MYB1 PE=2 SV=1) HSP 1 Score: 159.8 bits (403), Expect = 3.4e-38 Identity = 70/106 (66.04%), Postives = 84/106 (79.25%), Query Frame = 0
BLAST of Carg25840-RA vs. Swiss-Prot
Match: sp|O04192|MYB25_ARATH (Transcription factor MYB25 OS=Arabidopsis thaliana OX=3702 GN=MYB25 PE=2 SV=1) HSP 1 Score: 150.6 bits (379), Expect = 2.1e-35 Identity = 66/107 (61.68%), Postives = 81/107 (75.70%), Query Frame = 0
BLAST of Carg25840-RA vs. TrEMBL
Match: tr|A0A0A0LKY3|A0A0A0LKY3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G360620 PE=4 SV=1) HSP 1 Score: 345.5 bits (885), Expect = 8.9e-92 Identity = 176/215 (81.86%), Postives = 182/215 (84.65%), Query Frame = 0
BLAST of Carg25840-RA vs. TrEMBL
Match: tr|A0A1S3BAB9|A0A1S3BAB9_CUCME (transcription factor MYB44-like OS=Cucumis melo OX=3656 GN=LOC103487918 PE=4 SV=1) HSP 1 Score: 325.9 bits (834), Expect = 7.3e-86 Identity = 164/212 (77.36%), Postives = 170/212 (80.19%), Query Frame = 0
BLAST of Carg25840-RA vs. TrEMBL
Match: tr|A0A2P5DDL4|A0A2P5DDL4_9ROSA (MYB transcription factor OS=Trema orientalis OX=63057 GN=TorMYB86 PE=4 SV=1) HSP 1 Score: 290.0 bits (741), Expect = 4.4e-75 Identity = 150/215 (69.77%), Postives = 163/215 (75.81%), Query Frame = 0
BLAST of Carg25840-RA vs. TrEMBL
Match: tr|A0A2P5A6P2|A0A2P5A6P2_PARAD (MYB transcription factor OS=Parasponia andersonii OX=3476 GN=PanMYB86 PE=4 SV=1) HSP 1 Score: 288.1 bits (736), Expect = 1.7e-74 Identity = 146/207 (70.53%), Postives = 160/207 (77.29%), Query Frame = 0
BLAST of Carg25840-RA vs. TrEMBL
Match: tr|V7ASW0|V7ASW0_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_009G062700g PE=4 SV=1) HSP 1 Score: 284.3 bits (726), Expect = 2.4e-73 Identity = 140/204 (68.63%), Postives = 162/204 (79.41%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
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