Carg25840 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg25840
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	MYB transcription factor
Location	Cucurbita_argyrosperma_scaffold_356 : 128645 .. 129319 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAACCTCCTCCTCCTCCTCATCCTCCTCCTCCACCTCCTCCGATTCCTCCTTCTCGGCCAACCCCTCCCGCCGCCCTGAGAAGATCAAAGGCCCCTGGAGTGCGGAGGAGGATCGGATTCTGATCCATCTCGTCGACCGCTATGGACCCCGAAACTGGTCCTTGATTAGCCGTTACATTAAAGGCCGCTCGGGGAAGTCCTGCCGTCTCCGGTGGTGTAATCAGTTGAGTCCAAACGTTGAGCACCGGCCGTTTTCCGCCACGGAGGATGAGACGATTTTAGCGGCTCATGCCCGGTTCGGGAACCGGTGGGCTACCATTGCCCGGTTACTTCCAGGCCGGACCGATAATGCCGTTAAGAATCACTGGAACTCCACGCTTAAGCGAAGAGCAAGACACCAACAACATCGTTTAGCAATTGACGGAATTACCCCTGACAATCATGCCAATGCCGTGATTGATTCTGATTTGAAACTCTCCGTACCGTTAGAGGATGACCCATTGACTGCGTTGACTCTAGCACCGCCGGGAATCAGCGGCGGAGTCGTGGCGGAGGAGCGGCGGATTGAGAGTTTTCCGGCGGGGTTTTGGGATGCAATGAGGGATGTGGTAGCAAGGGAGGTGAGAGAGTACATGACGACGACGTTTTTGGAAAATCAAGAGTTTCATTAA

mRNA sequence

ATGACAACCTCCTCCTCCTCCTCATCCTCCTCCTCCACCTCCTCCGATTCCTCCTTCTCGGCCAACCCCTCCCGCCGCCCTGAGAAGATCAAAGGCCCCTGGAGTGCGGAGGAGGATCGGATTCTGATCCATCTCGTCGACCGCTATGGACCCCGAAACTGGTCCTTGATTAGCCGTTACATTAAAGGCCGCTCGGGGAAGTCCTGCCGTCTCCGGTGGTGTAATCAGTTGAGTCCAAACGTTGAGCACCGGCCGTTTTCCGCCACGGAGGATGAGACGATTTTAGCGGCTCATGCCCGGTTCGGGAACCGGTGGGCTACCATTGCCCGGTTACTTCCAGGCCGGACCGATAATGCCGTTAAGAATCACTGGAACTCCACGCTTAAGCGAAGAGCAAGACACCAACAACATCGTTTAGCAATTGACGGAATTACCCCTGACAATCATGCCAATGCCGTGATTGATTCTGATTTGAAACTCTCCGTACCGTTAGAGGATGACCCATTGACTGCGTTGACTCTAGCACCGCCGGGAATCAGCGGCGGAGTCGTGGCGGAGGAGCGGCGGATTGAGAGTTTTCCGGCGGGGTTTTGGGATGCAATGAGGGATGTGGTAGCAAGGGAGGTGAGAGAGTACATGACGACGACGTTTTTGGAAAATCAAGAGTTTCATTAA

Coding sequence (CDS)

ATGACAACCTCCTCCTCCTCCTCATCCTCCTCCTCCACCTCCTCCGATTCCTCCTTCTCGGCCAACCCCTCCCGCCGCCCTGAGAAGATCAAAGGCCCCTGGAGTGCGGAGGAGGATCGGATTCTGATCCATCTCGTCGACCGCTATGGACCCCGAAACTGGTCCTTGATTAGCCGTTACATTAAAGGCCGCTCGGGGAAGTCCTGCCGTCTCCGGTGGTGTAATCAGTTGAGTCCAAACGTTGAGCACCGGCCGTTTTCCGCCACGGAGGATGAGACGATTTTAGCGGCTCATGCCCGGTTCGGGAACCGGTGGGCTACCATTGCCCGGTTACTTCCAGGCCGGACCGATAATGCCGTTAAGAATCACTGGAACTCCACGCTTAAGCGAAGAGCAAGACACCAACAACATCGTTTAGCAATTGACGGAATTACCCCTGACAATCATGCCAATGCCGTGATTGATTCTGATTTGAAACTCTCCGTACCGTTAGAGGATGACCCATTGACTGCGTTGACTCTAGCACCGCCGGGAATCAGCGGCGGAGTCGTGGCGGAGGAGCGGCGGATTGAGAGTTTTCCGGCGGGGTTTTGGGATGCAATGAGGGATGTGGTAGCAAGGGAGGTGAGAGAGTACATGACGACGACGTTTTTGGAAAATCAAGAGTTTCATTAA

Protein sequence

MTTSSSSSSSSSTSSDSSFSANPSRRPEKIKGPWSAEEDRILIHLVDRYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPNVEHRPFSATEDETILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKRRARHQQHRLAIDGITPDNHANAVIDSDLKLSVPLEDDPLTALTLAPPGISGGVVAEERRIESFPAGFWDAMRDVVAREVREYMTTTFLENQEFH

Homology

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BLAST of Carg25840 vs. NCBI nr
Match: XP_022951647.1 (transcription factor MYB44-like [Cucurbita moschata])

HSP 1 Score: 416.8 bits (1070), Expect = 4.7e-113
Identity = 200/203 (98.52%), Postives = 200/203 (98.52%), Query Frame = 0


Query: 22  NPSRRPEKIKGPWSAEEDRILIHLVDRYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPNV 81
           NPSRRPEKIKGPWSAEEDRILI LVDRYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPNV
Sbjct: 22  NPSRRPEKIKGPWSAEEDRILIQLVDRYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPNV 81

Query: 82  EHRPFSATEDETILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKRRARHQQHRLAI 141
           EHRPFSATEDETILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKRRARHQQH LAI
Sbjct: 82  EHRPFSATEDETILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKRRARHQQHHLAI 141

Query: 142 DGITPDNHANAVIDSDLKLSVPLEDDPLTALTLAPPGISGGVVAEERRIESFPAGFWDAM 201
           DGITPDNHANAV DSDLKLSVPLEDDPLTALTLAPPGISGGVVAEERRIESFPAGFWDAM
Sbjct: 142 DGITPDNHANAVTDSDLKLSVPLEDDPLTALTLAPPGISGGVVAEERRIESFPAGFWDAM 201

Query: 202 RDVVAREVREYMTTTFLENQEFH 225
           RDVVAREVREYMTTTFLENQEFH
Sbjct: 202 RDVVAREVREYMTTTFLENQEFH 224

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BLAST of Carg25840 vs. NCBI nr
Match: XP_023002015.1 (transcription factor MYB44-like [Cucurbita maxima])

HSP 1 Score: 406.8 bits (1044), Expect = 4.9e-110
Identity = 195/200 (97.50%), Postives = 196/200 (98.00%), Query Frame = 0


Query: 25  RRPEKIKGPWSAEEDRILIHLVDRYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPNVEHR 84
           RRPEKIKGPWSAEEDRILIHLVDRYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPNVEHR
Sbjct: 31  RRPEKIKGPWSAEEDRILIHLVDRYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPNVEHR 90

Query: 85  PFSATEDETILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKRRARHQQHRLAIDGI 144
           PFSATEDETILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKRRAR QQH LA+DGI
Sbjct: 91  PFSATEDETILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKRRARDQQHHLAMDGI 150

Query: 145 TPDNHANAVIDSDLKLSVPLEDDPLTALTLAPPGISGGVVAEERRIESFPAGFWDAMRDV 204
           TPDNH NAV DSDLKLSVPLEDDPLTALTLAPPGISGGVVAEERRIESFPAGFWDAMRDV
Sbjct: 151 TPDNHGNAVTDSDLKLSVPLEDDPLTALTLAPPGISGGVVAEERRIESFPAGFWDAMRDV 210

Query: 205 VAREVREYMTTTFLENQEFH 225
           VAREVREYMTTTFLENQEFH
Sbjct: 211 VAREVREYMTTTFLENQEFH 230

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BLAST of Carg25840 vs. NCBI nr
Match: XP_023537871.1 (transcription factor MYB44-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 406.4 bits (1043), Expect = 6.4e-110
Identity = 194/203 (95.57%), Postives = 196/203 (96.55%), Query Frame = 0


Query: 22  NPSRRPEKIKGPWSAEEDRILIHLVDRYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPNV 81
           NPS RPEKIKGPWSAEEDRILI LVDRYGPRNWSLISRYIKGRSGKSCRLRWCNQLSP V
Sbjct: 100 NPSGRPEKIKGPWSAEEDRILIQLVDRYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPTV 159

Query: 82  EHRPFSATEDETILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKRRARHQQHRLAI 141
           EHRPFSATEDETILAAH+RFGNRWATIARLLPGRTDNAVKNHWNSTLKRRARHQQH L I
Sbjct: 160 EHRPFSATEDETILAAHSRFGNRWATIARLLPGRTDNAVKNHWNSTLKRRARHQQHHLVI 219

Query: 142 DGITPDNHANAVIDSDLKLSVPLEDDPLTALTLAPPGISGGVVAEERRIESFPAGFWDAM 201
           DGITPDNHANAV DSD KLSVPL+DDPLTALTLAPPGISGGVVAEERRIESFPAGFWDAM
Sbjct: 220 DGITPDNHANAVTDSDFKLSVPLQDDPLTALTLAPPGISGGVVAEERRIESFPAGFWDAM 279

Query: 202 RDVVAREVREYMTTTFLENQEFH 225
           RDVVAREVREYMTTTFLENQEFH
Sbjct: 280 RDVVAREVREYMTTTFLENQEFH 302

[Close]

BLAST of Carg25840 vs. NCBI nr
Match: AXF54213.1 (MYB8 [Cucurbita pepo])

HSP 1 Score: 406.4 bits (1043), Expect = 6.4e-110
Identity = 194/203 (95.57%), Postives = 196/203 (96.55%), Query Frame = 0


Query: 22  NPSRRPEKIKGPWSAEEDRILIHLVDRYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPNV 81
           NPS RPEKIKGPWSAEEDRILI LVDRYGPRNWSLISRYIKGRSGKSCRLRWCNQLSP V
Sbjct: 18  NPSGRPEKIKGPWSAEEDRILIQLVDRYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPTV 77

Query: 82  EHRPFSATEDETILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKRRARHQQHRLAI 141
           EHRPFSATEDETILAAH+RFGNRWATIARLLPGRTDNAVKNHWNSTLKRRARHQQH L I
Sbjct: 78  EHRPFSATEDETILAAHSRFGNRWATIARLLPGRTDNAVKNHWNSTLKRRARHQQHHLVI 137

Query: 142 DGITPDNHANAVIDSDLKLSVPLEDDPLTALTLAPPGISGGVVAEERRIESFPAGFWDAM 201
           DGITPDNHANAV DSD KLSVPL+DDPLTALTLAPPGISGGVVAEERRIESFPAGFWDAM
Sbjct: 138 DGITPDNHANAVTDSDFKLSVPLQDDPLTALTLAPPGISGGVVAEERRIESFPAGFWDAM 197

Query: 202 RDVVAREVREYMTTTFLENQEFH 225
           RDVVAREVREYMTTTFLENQEFH
Sbjct: 198 RDVVAREVREYMTTTFLENQEFH 220

[Close]

BLAST of Carg25840 vs. NCBI nr
Match: XP_022144294.1 (transcription factor MYB1-like [Momordica charantia])

HSP 1 Score: 350.1 bits (897), Expect = 5.5e-93
Identity = 171/207 (82.61%), Postives = 182/207 (87.92%), Query Frame = 0


Query: 24  SRRPEKIKGPWSAEEDRILIHLVDRYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPNVEH 83
           SRRPEKIKGPWSAEEDRIL  LV RYGPRNWSLISRYIKGRSGKSCRLRWCNQLSP+VEH
Sbjct: 28  SRRPEKIKGPWSAEEDRILTQLVGRYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPSVEH 87

Query: 84  RPFSATEDETILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKRRARHQQHRLAIDG 143
           RPFS TEDETILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKRRAR +Q +L +DG
Sbjct: 88  RPFSPTEDETILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKRRARERQQQLVMDG 147

Query: 144 ITPDNHANAV-IDSDLKLSVP-LEDDPLTALTLAPPGISG----GVVAEERRIESFPAGF 203
           I P+NH N+V + SDLKLSVP LEDDPLTALTLAPPGI G        ++RRIES P GF
Sbjct: 148 IAPENHGNSVNLPSDLKLSVPDLEDDPLTALTLAPPGIGGADPRAAAVDDRRIESLPVGF 207

Query: 204 WDAMRDVVAREVREYMTTTFLENQEFH 225
           WDAMRDV+AREVREYMTTTF+EN E H
Sbjct: 208 WDAMRDVIAREVREYMTTTFMENPELH 234

[Close]

BLAST of Carg25840 vs. TAIR10
Match: AT4G37260.1 (myb domain protein 73)

HSP 1 Score: 189.5 bits (480), Expect = 2.2e-48
Identity = 98/173 (56.65%), Postives = 120/173 (69.36%), Query Frame = 0


Query: 22  NPSRR-PEKIKGPWSAEEDRILIHLVDRYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPN 81
           NP+R+  E+IKGPWS EED +L  LV ++GPRNWSLIS+ I GRSGKSCRLRWCNQLSP 
Sbjct: 3   NPTRKNMERIKGPWSPEEDDLLQRLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPE 62

Query: 82  VEHRPFSATEDETILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKRRARHQQHRLA 141
           VEHR FS  EDETI+ AHARFGN+WATI+RLL GRTDNA+KNHWNSTLKR+        +
Sbjct: 63  VEHRAFSQEEDETIIRAHARFGNKWATISRLLNGRTDNAIKNHWNSTLKRKC-------S 122

Query: 142 IDGITPDNHANAVIDSDLKLSVPLE------DDPLTALTLAPPGISGGVVAEE 188
           ++G + D   N   D +L    PL+          T L ++P   SG  V+E+
Sbjct: 123 VEGQSCDFGGNGGYDGNLGEEQPLKRTASGGGGVSTGLYMSPGSPSGSDVSEQ 168

[Close]

BLAST of Carg25840 vs. TAIR10
Match: AT5G67300.1 (myb domain protein r1)

HSP 1 Score: 187.2 bits (474), Expect = 1.1e-47
Identity = 98/169 (57.99%), Postives = 117/169 (69.23%), Query Frame = 0


Query: 28  EKIKGPWSAEEDRILIHLVDRYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPNVEHRPFS 87
           ++IKGPWS EED  L  LV +YGPRNW++IS+ I GRSGKSCRLRWCNQLSP VEHRPFS
Sbjct: 3   DRIKGPWSPEEDEQLRRLVVKYGPRNWTVISKSIPGRSGKSCRLRWCNQLSPQVEHRPFS 62

Query: 88  ATEDETILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKRRARHQQHRLAIDGITPD 147
           A EDETI  AHA+FGN+WATIARLL GRTDNAVKNHWNSTLKR+     HR   DG   +
Sbjct: 63  AEEDETIARAHAQFGNKWATIARLLNGRTDNAVKNHWNSTLKRKCGGYDHR-GYDG--SE 122

Query: 148 NHANAVIDSDLKLSVPLEDDP-LTALTLAPPGISGGVVAEERRIESFPA 196
           +H        +K SV     P +T L ++P   +G  V++   I   P+
Sbjct: 123 DH------RPVKRSVSAGSPPVVTGLYMSPGSPTGSDVSDSSTIPILPS 162

[Close]

BLAST of Carg25840 vs. TAIR10
Match: AT2G23290.1 (myb domain protein 70)

HSP 1 Score: 179.5 bits (454), Expect = 2.3e-45
Identity = 80/104 (76.92%), Postives = 92/104 (88.46%), Query Frame = 0


Query: 28  EKIKGPWSAEEDRILIHLVDRYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPNVEHRPFS 87
           ++IKGPWS EED +L  LV ++GPRNWSLIS+ I GRSGKSCRLRWCNQLSP VEHR F+
Sbjct: 10  DRIKGPWSPEEDDLLQSLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPEVEHRGFT 69

Query: 88  ATEDETILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKRR 132
           A ED+TI+ AHARFGN+WATIARLL GRTDNA+KNHWNSTLKR+
Sbjct: 70  AEEDDTIILAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRK 113

[Close]

BLAST of Carg25840 vs. TAIR10
Match: AT3G50060.1 (myb domain protein 77)

HSP 1 Score: 177.9 bits (450), Expect = 6.7e-45
Identity = 79/104 (75.96%), Postives = 90/104 (86.54%), Query Frame = 0


Query: 28  EKIKGPWSAEEDRILIHLVDRYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPNVEHRPFS 87
           +++KGPWS EED  L  +V++YGPRNWS IS+ I GRSGKSCRLRWCNQLSP VEHRPFS
Sbjct: 3   DRVKGPWSQEEDEQLRRMVEKYGPRNWSAISKSIPGRSGKSCRLRWCNQLSPEVEHRPFS 62

Query: 88  ATEDETILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKRR 132
             EDETI+ A A+FGN+WATIARLL GRTDNAVKNHWNSTLKR+
Sbjct: 63  PEEDETIVTARAQFGNKWATIARLLNGRTDNAVKNHWNSTLKRK 106

[Close]

BLAST of Carg25840 vs. TAIR10
Match: AT3G09230.1 (myb domain protein 1)

HSP 1 Score: 159.8 bits (403), Expect = 1.9e-39
Identity = 70/106 (66.04%), Postives = 84/106 (79.25%), Query Frame = 0


Query: 26  RPEKIKGPWSAEEDRILIHLVDRYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPNVEHRP 85
           R +++KGPWS EED +L  LV R G RNWS I+R I GRSGKSCRLRWCNQL+PN+    
Sbjct: 50  RRDRVKGPWSKEEDDVLSELVKRLGARNWSFIARSIPGRSGKSCRLRWCNQLNPNLIRNS 109

Query: 86  FSATEDETILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKRR 132
           F+  ED+ I+AAHA  GN+WA IA+LLPGRTDNA+KNHWNS L+RR
Sbjct: 110 FTEVEDQAIIAAHAIHGNKWAVIAKLLPGRTDNAIKNHWNSALRRR 155

[Close]

BLAST of Carg25840 vs. Swiss-Prot
Match: sp|O23160|MYB73_ARATH (Transcription factor MYB73 OS=Arabidopsis thaliana OX=3702 GN=MYB73 PE=1 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 4.0e-47
Identity = 98/173 (56.65%), Postives = 120/173 (69.36%), Query Frame = 0


Query: 22  NPSRR-PEKIKGPWSAEEDRILIHLVDRYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPN 81
           NP+R+  E+IKGPWS EED +L  LV ++GPRNWSLIS+ I GRSGKSCRLRWCNQLSP 
Sbjct: 3   NPTRKNMERIKGPWSPEEDDLLQRLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPE 62

Query: 82  VEHRPFSATEDETILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKRRARHQQHRLA 141
           VEHR FS  EDETI+ AHARFGN+WATI+RLL GRTDNA+KNHWNSTLKR+        +
Sbjct: 63  VEHRAFSQEEDETIIRAHARFGNKWATISRLLNGRTDNAIKNHWNSTLKRKC-------S 122

Query: 142 IDGITPDNHANAVIDSDLKLSVPLE------DDPLTALTLAPPGISGGVVAEE 188
           ++G + D   N   D +L    PL+          T L ++P   SG  V+E+
Sbjct: 123 VEGQSCDFGGNGGYDGNLGEEQPLKRTASGGGGVSTGLYMSPGSPSGSDVSEQ 168

[Close]

BLAST of Carg25840 vs. Swiss-Prot
Match: sp|Q9FDW1|MYB44_ARATH (Transcription factor MYB44 OS=Arabidopsis thaliana OX=3702 GN=MYB44 PE=1 SV=1)

HSP 1 Score: 187.2 bits (474), Expect = 2.0e-46
Identity = 98/169 (57.99%), Postives = 117/169 (69.23%), Query Frame = 0


Query: 28  EKIKGPWSAEEDRILIHLVDRYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPNVEHRPFS 87
           ++IKGPWS EED  L  LV +YGPRNW++IS+ I GRSGKSCRLRWCNQLSP VEHRPFS
Sbjct: 3   DRIKGPWSPEEDEQLRRLVVKYGPRNWTVISKSIPGRSGKSCRLRWCNQLSPQVEHRPFS 62

Query: 88  ATEDETILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKRRARHQQHRLAIDGITPD 147
           A EDETI  AHA+FGN+WATIARLL GRTDNAVKNHWNSTLKR+     HR   DG   +
Sbjct: 63  AEEDETIARAHAQFGNKWATIARLLNGRTDNAVKNHWNSTLKRKCGGYDHR-GYDG--SE 122

Query: 148 NHANAVIDSDLKLSVPLEDDP-LTALTLAPPGISGGVVAEERRIESFPA 196
           +H        +K SV     P +T L ++P   +G  V++   I   P+
Sbjct: 123 DH------RPVKRSVSAGSPPVVTGLYMSPGSPTGSDVSDSSTIPILPS 162

[Close]

BLAST of Carg25840 vs. Swiss-Prot
Match: sp|Q9SN12|MYB77_ARATH (Transcription factor MYB77 OS=Arabidopsis thaliana OX=3702 GN=MYB77 PE=1 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 1.2e-43
Identity = 79/104 (75.96%), Postives = 90/104 (86.54%), Query Frame = 0


Query: 28  EKIKGPWSAEEDRILIHLVDRYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPNVEHRPFS 87
           +++KGPWS EED  L  +V++YGPRNWS IS+ I GRSGKSCRLRWCNQLSP VEHRPFS
Sbjct: 3   DRVKGPWSQEEDEQLRRMVEKYGPRNWSAISKSIPGRSGKSCRLRWCNQLSPEVEHRPFS 62

Query: 88  ATEDETILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKRR 132
             EDETI+ A A+FGN+WATIARLL GRTDNAVKNHWNSTLKR+
Sbjct: 63  PEEDETIVTARAQFGNKWATIARLLNGRTDNAVKNHWNSTLKRK 106

[Close]

BLAST of Carg25840 vs. Swiss-Prot
Match: sp|Q42575|MYB1_ARATH (Transcription factor MYB1 OS=Arabidopsis thaliana OX=3702 GN=MYB1 PE=2 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 3.4e-38
Identity = 70/106 (66.04%), Postives = 84/106 (79.25%), Query Frame = 0


Query: 26  RPEKIKGPWSAEEDRILIHLVDRYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPNVEHRP 85
           R +++KGPWS EED +L  LV R G RNWS I+R I GRSGKSCRLRWCNQL+PN+    
Sbjct: 50  RRDRVKGPWSKEEDDVLSELVKRLGARNWSFIARSIPGRSGKSCRLRWCNQLNPNLIRNS 109

Query: 86  FSATEDETILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKRR 132
           F+  ED+ I+AAHA  GN+WA IA+LLPGRTDNA+KNHWNS L+RR
Sbjct: 110 FTEVEDQAIIAAHAIHGNKWAVIAKLLPGRTDNAIKNHWNSALRRR 155

[Close]

BLAST of Carg25840 vs. Swiss-Prot
Match: sp|O04192|MYB25_ARATH (Transcription factor MYB25 OS=Arabidopsis thaliana OX=3702 GN=MYB25 PE=2 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 2.1e-35
Identity = 66/107 (61.68%), Postives = 81/107 (75.70%), Query Frame = 0


Query: 29  KIKGPWSAEEDRILIHLVDRYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPNVEHRPFSA 88
           K+KGPW  E+D  L  LV   GPRNW+LISR I GRSGKSCRLRWCNQL P ++ +PFS 
Sbjct: 48  KVKGPWLPEQDEALTRLVKMCGPRNWNLISRGIPGRSGKSCRLRWCNQLDPILKRKPFSD 107

Query: 89  TEDETILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKRRARHQ 136
            E+  I++A A  GN+W+ IA+LLPGRTDNA+KNHWNS L+R+   Q
Sbjct: 108 EEEHMIMSAQAVLGNKWSVIAKLLPGRTDNAIKNHWNSNLRRKPAEQ 154

[Close]

BLAST of Carg25840 vs. TrEMBL
Match: tr|A0A0A0LKY3|A0A0A0LKY3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G360620 PE=4 SV=1)

HSP 1 Score: 345.5 bits (885), Expect = 8.9e-92
Identity = 176/215 (81.86%), Postives = 182/215 (84.65%), Query Frame = 0


Query: 25  RRPEKIKGPWSAEEDRILIHLVDRYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPNVEHR 84
           RRPEKIKGPWSAEEDRIL  LVDRYG RNWSLISRYIKGRSGKSCRLRWCNQLSPNVEHR
Sbjct: 27  RRPEKIKGPWSAEEDRILTQLVDRYGARNWSLISRYIKGRSGKSCRLRWCNQLSPNVEHR 86

Query: 85  PFSATEDETILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKRRARHQQH--RLAID 144
           PFS TEDETILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKRRAR QQH  +L +D
Sbjct: 87  PFSPTEDETILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKRRAREQQHHQQLVMD 146

Query: 145 GITPDNHA--------NAVIDSDLKL----SVPLEDDPLTALTLAPPGISG--GVVAEER 204
           GITP+ H            I SDLKL    SVPLEDDPLTALTLAPPGI G     AEER
Sbjct: 147 GITPECHGISNXXXXXXVNIASDLKLSVSVSVPLEDDPLTALTLAPPGIGGVRTTAAEER 206

Query: 205 RIESFPAGFWDAMRDVVAREVREYMTTTFLENQEF 224
           R+ESFPAGFWDAMRDV+AREVREYMTTTF+EN EF
Sbjct: 207 RVESFPAGFWDAMRDVIAREVREYMTTTFMENPEF 241

[Close]

BLAST of Carg25840 vs. TrEMBL
Match: tr|A0A1S3BAB9|A0A1S3BAB9_CUCME (transcription factor MYB44-like OS=Cucumis melo OX=3656 GN=LOC103487918 PE=4 SV=1)

HSP 1 Score: 325.9 bits (834), Expect = 7.3e-86
Identity = 164/212 (77.36%), Postives = 170/212 (80.19%), Query Frame = 0


Query: 25  RRPEKIKGPWSAEEDRILIHLVDRYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPNVEHR 84
           RRPEKIKGPWSAEEDRIL  LVDRYG RNWSLISRYIKGRSGKSCRLRWCNQLSPNVEHR
Sbjct: 27  RRPEKIKGPWSAEEDRILTQLVDRYGARNWSLISRYIKGRSGKSCRLRWCNQLSPNVEHR 86

Query: 85  PFSATEDETILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKR-RARHQQHRLAIDG 144
           PFS TEDETILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKR            DG
Sbjct: 87  PFSPTEDETILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKRXXXXXXXXXXXXDG 146

Query: 145 ITPDNH---------ANAVIDSDLKLSVPLEDDPLTALTLAPPGISG--GVVAEERRIES 204
           ITP+ H          N   D  L +SVPLEDDPLTALTLAPPGI G      +ER +ES
Sbjct: 147 ITPECHXXXXXXXXAVNIASDLKLSVSVPLEDDPLTALTLAPPGIGGVRTTAVDERLVES 206

Query: 205 FPAGFWDAMRDVVAREVREYMTTTFLENQEFH 225
           FPAGFWDAMRDV+AREVREYMTTTF+EN EFH
Sbjct: 207 FPAGFWDAMRDVIAREVREYMTTTFMENPEFH 238

[Close]

BLAST of Carg25840 vs. TrEMBL
Match: tr|A0A2P5DDL4|A0A2P5DDL4_9ROSA (MYB transcription factor OS=Trema orientalis OX=63057 GN=TorMYB86 PE=4 SV=1)

HSP 1 Score: 290.0 bits (741), Expect = 4.4e-75
Identity = 150/215 (69.77%), Postives = 163/215 (75.81%), Query Frame = 0


Query: 26  RPEKIKGPWSAEEDRILIHLVDRYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPNVEHRP 85
           +PE+IKGPWS EEDRIL  LV+RYGPRNWSLISRYIKGRSGKSCRLRWCNQLSP+VEHRP
Sbjct: 37  KPERIKGPWSTEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPSVEHRP 96

Query: 86  FSATEDETILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKRRARHQQHRL-AID-- 145
           FSA EDETILAAHAR+GNRWATIARLLPGRTDNAVKNHWNSTLKRR R QQ  +  +D  
Sbjct: 97  FSAAEDETILAAHARYGNRWATIARLLPGRTDNAVKNHWNSTLKRRVREQQMGMEEMDGS 156

Query: 146 -----------------GITPDNHANAVIDSDLKLSVP---LEDDPLTALTLAPPGISGG 205
                            GI  D++ N  I   +    P   LEDDPLTALTLAPPGI G 
Sbjct: 157 ACGTAAFGGGPAGSVPCGINNDSNINNGIGISVNNGSPPLSLEDDPLTALTLAPPGIGGE 216

Query: 206 VVAEERRIESFPAGFWDAMRDVVAREVREYMTTTF 218
            VA ERR ESFPAGFWD MRDV+AREVREY+ + F
Sbjct: 217 TVA-ERRTESFPAGFWDVMRDVIAREVREYVNSGF 250

[Close]

BLAST of Carg25840 vs. TrEMBL
Match: tr|A0A2P5A6P2|A0A2P5A6P2_PARAD (MYB transcription factor OS=Parasponia andersonii OX=3476 GN=PanMYB86 PE=4 SV=1)

HSP 1 Score: 288.1 bits (736), Expect = 1.7e-74
Identity = 146/207 (70.53%), Postives = 160/207 (77.29%), Query Frame = 0


Query: 26  RPEKIKGPWSAEEDRILIHLVDRYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPNVEHRP 85
           +PE+IKGPWS EEDRIL  LV++YGPRNWSLISRYIKGRSGKSCRLRWCNQLSP+VEHRP
Sbjct: 37  KPERIKGPWSTEEDRILTRLVEQYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPSVEHRP 96

Query: 86  FSATEDETILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKRRARHQ---------- 145
           FSA EDETILAAHAR+GNRWATIARLLPGRTDNAVKNHWNSTLKRR R Q          
Sbjct: 97  FSAAEDETILAAHARYGNRWATIARLLPGRTDNAVKNHWNSTLKRRVREQLMGMEEMDGS 156

Query: 146 QHRLAIDGITPDNHANAVIDSDLKLS-----VPLEDDPLTALTLAPPGISGGVVAEERRI 205
             R A  G  P       I++D  ++     + LEDDPLTALTLAPPGI GG   E RR 
Sbjct: 157 ACRTAAFGGGPAGSVPCGINNDSNINNGSPPLSLEDDPLTALTLAPPGI-GGETVEGRRT 216

Query: 206 ESFPAGFWDAMRDVVAREVREYMTTTF 218
           ESFPAGFWD MRDV+AREVREY+ + F
Sbjct: 217 ESFPAGFWDVMRDVIAREVREYVNSEF 242

[Close]

BLAST of Carg25840 vs. TrEMBL
Match: tr|V7ASW0|V7ASW0_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_009G062700g PE=4 SV=1)

HSP 1 Score: 284.3 bits (726), Expect = 2.4e-73
Identity = 140/204 (68.63%), Postives = 162/204 (79.41%), Query Frame = 0


Query: 27  PEKIKGPWSAEEDRILIHLVDRYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPNVEHRPF 86
           P +IKGPWSAEEDRIL  LVDRYGPRNWSLISRYIKGRSGKSCRLRWCNQLSP V+HRPF
Sbjct: 27  PHRIKGPWSAEEDRILTRLVDRYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPTVQHRPF 86

Query: 87  SATEDETILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKRRARHQQHRLAIDGITP 146
           S  ED+TI+AAHA++GNRWATIARLLPGRTDNAVKNHWNSTLKRRA+      A+  I  
Sbjct: 87  SPQEDDTIIAAHAQYGNRWATIARLLPGRTDNAVKNHWNSTLKRRAK------ALLDINV 146

Query: 147 DNHANAVIDSDLKLSVPLEDDPLTALTLAPPGISGGVVAEERRI------ESFPAGFWDA 206
           +N+A++   +    S   EDDPLTALTLAPPGIS   VAE+  +      E+ PAGFWD 
Sbjct: 147 NNNASSEGATSSAPSRSFEDDPLTALTLAPPGISNASVAEDAVLDHRASPENAPAGFWDM 206

Query: 207 MRDVVAREVREYMTTTFLENQEFH 225
           MRDV+AREVREY++++F +N  FH
Sbjct: 207 MRDVIAREVREYVSSSFSDNSNFH 224

The following BLAST results are available for this feature:

BLAST of Carg25840 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022951647.1	4.7e-113	98.52	transcription factor MYB44-like [Cucurbita moschata]	[more]
XP_023002015.1	4.9e-110	97.50	transcription factor MYB44-like [Cucurbita maxima]	[more]
XP_023537871.1	6.4e-110	95.57	transcription factor MYB44-like [Cucurbita pepo subsp. pepo]	[more]
AXF54213.1	6.4e-110	95.57	MYB8 [Cucurbita pepo]	[more]
XP_022144294.1	5.5e-93	82.61	transcription factor MYB1-like [Momordica charantia]	[more]

BLAST of Carg25840 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G37260.1	2.2e-48	56.65	myb domain protein 73	[more]
AT5G67300.1	1.1e-47	57.99	myb domain protein r1	[more]
AT2G23290.1	2.3e-45	76.92	myb domain protein 70	[more]
AT3G50060.1	6.7e-45	75.96	myb domain protein 77	[more]
AT3G09230.1	1.9e-39	66.04	myb domain protein 1	[more]

BLAST of Carg25840 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|O23160\|MYB73_ARATH	4.0e-47	56.65	Transcription factor MYB73 OS=Arabidopsis thaliana OX=3702 GN=MYB73 PE=1 SV=1	[more]
sp\|Q9FDW1\|MYB44_ARATH	2.0e-46	57.99	Transcription factor MYB44 OS=Arabidopsis thaliana OX=3702 GN=MYB44 PE=1 SV=1	[more]
sp\|Q9SN12\|MYB77_ARATH	1.2e-43	75.96	Transcription factor MYB77 OS=Arabidopsis thaliana OX=3702 GN=MYB77 PE=1 SV=1	[more]
sp\|Q42575\|MYB1_ARATH	3.4e-38	66.04	Transcription factor MYB1 OS=Arabidopsis thaliana OX=3702 GN=MYB1 PE=2 SV=1	[more]
sp\|O04192\|MYB25_ARATH	2.1e-35	61.68	Transcription factor MYB25 OS=Arabidopsis thaliana OX=3702 GN=MYB25 PE=2 SV=1	[more]

BLAST of Carg25840 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LKY3\|A0A0A0LKY3_CUCSA	8.9e-92	81.86	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G360620 PE=4 SV=1	[more]
tr\|A0A1S3BAB9\|A0A1S3BAB9_CUCME	7.3e-86	77.36	transcription factor MYB44-like OS=Cucumis melo OX=3656 GN=LOC103487918 PE=4 SV=...	[more]
tr\|A0A2P5DDL4\|A0A2P5DDL4_9ROSA	4.4e-75	69.77	MYB transcription factor OS=Trema orientalis OX=63057 GN=TorMYB86 PE=4 SV=1	[more]
tr\|A0A2P5A6P2\|A0A2P5A6P2_PARAD	1.7e-74	70.53	MYB transcription factor OS=Parasponia andersonii OX=3476 GN=PanMYB86 PE=4 SV=1	[more]
tr\|V7ASW0\|V7ASW0_PHAVU	2.4e-73	68.63	Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_009G062700g PE=4 ...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

Vocabulary: **INTERPRO**
Term	Definition
IPR009057	Homeobox-like_sf
IPR017930	Myb_dom
IPR001005	SANT/Myb

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg25840-RA	Carg25840-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 82..130 e-value: 3.3E-14 score: 63.2 coord: 30..79 e-value: 1.8E-16 score: 70.7
IPR001005	SANT/Myb domain	PFAM	PF00249	Myb_DNA-binding	coord: 31..76 e-value: 3.6E-18 score: 65.3 coord: 85..127 e-value: 7.0E-14 score: 51.6
IPR001005	SANT/Myb domain	CDD	cd00167	SANT	coord: 33..75 e-value: 6.70673E-15 score: 65.2894
IPR001005	SANT/Myb domain	CDD	cd00167	SANT	coord: 85..128 e-value: 1.16136E-10 score: 53.7334
None	No IPR available	GENE3D	G3DSA:1.10.10.60		coord: 30..83 e-value: 3.0E-22 score: 80.3
None	No IPR available	GENE3D	G3DSA:1.10.10.60		coord: 85..149 e-value: 2.5E-20 score: 74.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..33
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24
None	No IPR available	PANTHER	PTHR10641	MYB-LIKE DNA-BINDING PROTEIN MYB	coord: 6..214
None	No IPR available	PANTHER	PTHR10641:SF611	SUBFAMILY NOT NAMED	coord: 6..214
IPR017930	Myb domain	PROSITE	PS51294	HTH_MYB	coord: 26..81 score: 28.908
IPR017930	Myb domain	PROSITE	PS51294	HTH_MYB	coord: 83..132 score: 19.958
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	SSF46689	Homeodomain-like	coord: 28..124

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg25840	Cla022542	Watermelon (97103) v1	carwmB0263
Carg25840	Csa2G360620	Cucumber (Chinese Long) v2	carcuB0299
Carg25840	MELO3C010893	Melon (DHL92) v3.5.1	carmeB0274
Carg25840	ClCG08G015600	Watermelon (Charleston Gray)	carwcgB0264
Carg25840	CSPI02G19470	Wild cucumber (PI 183967)	carcpiB0303
Carg25840	Cucsa.232630	Cucumber (Gy14) v1	carcgyB0322
Carg25840	CmaCh12G005170	Cucurbita maxima (Rimu)	carcmaB0377
Carg25840	CmoCh12G004570	Cucurbita moschata (Rifu)	carcmoB0374
Carg25840	Lsi08G014440	Bottle gourd (USVL1VR-Ls)	carlsiB245
Carg25840	Cp4.1LG07g04550	Cucurbita pepo (Zucchini)	carcpeB0383
Carg25840	CsGy2G019340	Cucumber (Gy14) v2	carcgybB0286
Carg25840	MELO3C010893.2	Melon (DHL92) v3.6.1	carmedB0286
Carg25840	CsaV3_2G028170	Cucumber (Chinese Long) v3	carcucB0302
Carg25840	Cla97C08G159210	Watermelon (97103) v2	carwmbB0280
Carg25840	Bhi04G000283	Wax gourd	carwgoB0356

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg25840	Silver-seed gourd	carcarB215
Carg25840	Cucurbita maxima (Rimu)	carcmaB0378
Carg25840	Cucurbita moschata (Rifu)	carcmoB0375
Carg25840	Cucurbita pepo (Zucchini)	carcpeB0382