Carg25264-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg25264-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	auxin-responsive protein SAUR32
Location	Cucurbita_argyrosperma_scaffold_249 : 44062 .. 44499 (+)
Sequence length	438

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGAACAACAAAAGGTTTCAGATTGAAAATCAAGCTTCCCAAGATCTTCAAACGGAGAACCACCTCCAACCCTTTTTCCAAGCTCTTCGCCCTCGCTACGGCGTCGTTTTCTCGCCCGGATGCGTACTCCCGGCTGAACCGGGTCCGGAACGGACCGGAAGCGGCGGCGCCGAAGGGGTATTTGGCCGTGCACGTCGGTGGAGCGGAGGATGAAAGGGAGAGACATCTTGTGCCGCTGATTTACTTCAACCATCCGATGTTTGGGAAATTGCTGCAGGCGGCGGAGAGGATTTATGGGTTTCAGTATCCGGGTCGGATCGTCATTCCGGTTGATGTGTCGGAGTTTGAGGAGGTTACCAATTGCATTGCCACGGCGGAGTACGGCTGCCGCAAACGTCGTAGCGGTGGCTACCGGTGGCGGAGCTGTGGAAAGTAG

mRNA sequence

ATGCGAACAACAAAAGGTTTCAGATTGAAAATCAAGCTTCCCAAGATCTTCAAACGGAGAACCACCTCCAACCCTTTTTCCAAGCTCTTCGCCCTCGCTACGGCGTCGTTTTCTCGCCCGGATGCGTACTCCCGGCTGAACCGGGTCCGGAACGGACCGGAAGCGGCGGCGCCGAAGGGGTATTTGGCCGTGCACGTCGGTGGAGCGGAGGATGAAAGGGAGAGACATCTTGTGCCGCTGATTTACTTCAACCATCCGATGTTTGGGAAATTGCTGCAGGCGGCGGAGAGGATTTATGGGTTTCAGTATCCGGGTCGGATCGTCATTCCGGTTGATGTGTCGGAGTTTGAGGAGGTTACCAATTGCATTGCCACGGCGGAGTACGGCTGCCGCAAACGTCGTAGCGGTGGCTACCGGTGGCGGAGCTGTGGAAAGTAG

Coding sequence (CDS)

ATGCGAACAACAAAAGGTTTCAGATTGAAAATCAAGCTTCCCAAGATCTTCAAACGGAGAACCACCTCCAACCCTTTTTCCAAGCTCTTCGCCCTCGCTACGGCGTCGTTTTCTCGCCCGGATGCGTACTCCCGGCTGAACCGGGTCCGGAACGGACCGGAAGCGGCGGCGCCGAAGGGGTATTTGGCCGTGCACGTCGGTGGAGCGGAGGATGAAAGGGAGAGACATCTTGTGCCGCTGATTTACTTCAACCATCCGATGTTTGGGAAATTGCTGCAGGCGGCGGAGAGGATTTATGGGTTTCAGTATCCGGGTCGGATCGTCATTCCGGTTGATGTGTCGGAGTTTGAGGAGGTTACCAATTGCATTGCCACGGCGGAGTACGGCTGCCGCAAACGTCGTAGCGGTGGCTACCGGTGGCGGAGCTGTGGAAAGTAG

Protein sequence

MRTTKGFRLKIKLPKIFKRRTTSNPFSKLFALATASFSRPDAYSRLNRVRNGPEAAAPKGYLAVHVGGAEDERERHLVPLIYFNHPMFGKLLQAAERIYGFQYPGRIVIPVDVSEFEEVTNCIATAEYGCRKRRSGGYRWRSCGK

Homology

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BLAST of Carg25264-RA vs. NCBI nr
Match: XP_022923260.1 (auxin-responsive protein SAUR32-like [Cucurbita moschata])

HSP 1 Score: 292.4 bits (747), Expect = 8.7e-76
Identity = 142/145 (97.93%), Postives = 142/145 (97.93%), Query Frame = 0


Query: 1   MRTTKGFRLKIKLPKIFKRRTTSNPFSKLFALATASFSRPDAYSRLNRVRNGPEAAAPKG 60
           MRTTKGFRLKIKLP IFKRRTTSNPFSKLFALATASFSRPDAYSRLNRVRNGPEAAAPKG
Sbjct: 1   MRTTKGFRLKIKLPNIFKRRTTSNPFSKLFALATASFSRPDAYSRLNRVRNGPEAAAPKG 60

Query: 61  YLAVHVGGAEDERERHLVPLIYFNHPMFGKLLQAAERIYGFQYPGRIVIPVDVSEFEEVT 120
           YLAVHVGGAEDERERHLVPLIYFNHPMFGKLLQAAERIYGFQYPGRIVIPVDVSEFEEVT
Sbjct: 61  YLAVHVGGAEDERERHLVPLIYFNHPMFGKLLQAAERIYGFQYPGRIVIPVDVSEFEEVT 120

Query: 121 NCIATAEYGCRKRRSGGYRWRSCGK 146
           NCIATAEYGCR R SGGYRWRSCGK
Sbjct: 121 NCIATAEYGCRNRHSGGYRWRSCGK 145

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BLAST of Carg25264-RA vs. NCBI nr
Match: XP_023552967.1 (auxin-responsive protein SAUR32-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 287.0 bits (733), Expect = 3.7e-74
Identity = 140/145 (96.55%), Postives = 141/145 (97.24%), Query Frame = 0


Query: 1   MRTTKGFRLKIKLPKIFKRRTTSNPFSKLFALATASFSRPDAYSRLNRVRNGPEAAAPKG 60
           MRTTKGFRLKIKLP IFKRRTTSNPFSKLFALATASFSR +AYSRLNRVRNGPEAAAPKG
Sbjct: 1   MRTTKGFRLKIKLPNIFKRRTTSNPFSKLFALATASFSRRNAYSRLNRVRNGPEAAAPKG 60

Query: 61  YLAVHVGGAEDERERHLVPLIYFNHPMFGKLLQAAERIYGFQYPGRIVIPVDVSEFEEVT 120
           YLAVHVGG EDERERHLVPLIYFNHPMFGKLLQAAERIYGFQYPGRIVIPVDVSEFEEVT
Sbjct: 61  YLAVHVGGLEDERERHLVPLIYFNHPMFGKLLQAAERIYGFQYPGRIVIPVDVSEFEEVT 120

Query: 121 NCIATAEYGCRKRRSGGYRWRSCGK 146
           NCIATAEYGCR RRSGGYRWRSCGK
Sbjct: 121 NCIATAEYGCRNRRSGGYRWRSCGK 145

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BLAST of Carg25264-RA vs. NCBI nr
Match: XP_008448892.1 (PREDICTED: auxin-responsive protein SAUR32 [Cucumis melo])

HSP 1 Score: 209.9 bits (533), Expect = 5.7e-51
Identity = 113/151 (74.83%), Postives = 118/151 (78.15%), Query Frame = 0


Query: 2   RTTKGFRLKIKLPKIFKRR-------TTSNPFSKLFALATASFSRPDAYSRLNRVRNGPE 61
           R TKGF+LKIKL KIFK R       T SNPFSKLF+LATA FSR   Y+RLNRVR+ P 
Sbjct: 3   RRTKGFKLKIKLLKIFKWRTHFFNLHTYSNPFSKLFSLATAPFSRRVGYARLNRVRSTPA 62

Query: 62  AAAPKGYLAVHVGGAEDERERHLVPLIYFNHPMFGKLLQAAERIYGFQYPGRIVIPVDVS 121
            A PKGYLAVHVGG EDE ERHLVP+IYFNHPMF KLLQAAE IYGF YPGRIVIPVDVS
Sbjct: 63  VATPKGYLAVHVGGPEDETERHLVPVIYFNHPMFRKLLQAAEVIYGFDYPGRIVIPVDVS 122

Query: 122 EFEEVTNCIATAEYGCRKRRSGGYRWRSCGK 146
           EFEEV N IA AE G   RRSGGYR R CGK
Sbjct: 123 EFEEVKNGIAAAENGRYCRRSGGYRRRRCGK 153

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BLAST of Carg25264-RA vs. NCBI nr
Match: XP_004147976.1 (PREDICTED: uncharacterized protein LOC101210462 [Cucumis sativus] >KGN55902.1 hypothetical protein Csa_3G035310 [Cucumis sativus])

HSP 1 Score: 203.8 bits (517), Expect = 4.1e-49
Identity = 110/152 (72.37%), Postives = 118/152 (77.63%), Query Frame = 0


Query: 2   RTTKGFRLKIKLPKIFKRRTT-------SNPFSKLFALATASFSRPDAYSRLNRVRNGPE 61
           RTTKGF+LK+KL K+FK RT        SNPFSKLF+LAT  FSRP  Y+RLNRVR+ P 
Sbjct: 3   RTTKGFKLKLKLLKVFKWRTPFFNLHTYSNPFSKLFSLATDPFSRPVRYARLNRVRSTPP 62

Query: 62  AAAPKGYLAVHVGGAEDERERHLVPLIYFNHPMFGKLLQAAERIYGFQYPGRIVIPVDVS 121
            A PKGYLAVHVGG E+ERERHLVP+IYFNHPMF KLLQAAE IYGF YPGRIVIPVDVS
Sbjct: 63  VATPKGYLAVHVGGPENERERHLVPVIYFNHPMFRKLLQAAEVIYGFDYPGRIVIPVDVS 122

Query: 122 EFEEVTNCIATAEYG-CRKRRSGGYRWRSCGK 146
           EFEEV N IA  E G C  RR G  RWR CGK
Sbjct: 123 EFEEVKNGIAATENGRCCPRRGGYRRWR-CGK 153

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BLAST of Carg25264-RA vs. NCBI nr
Match: XP_023005960.1 (auxin-induced protein 15A-like [Cucurbita maxima])

HSP 1 Score: 181.0 bits (458), Expect = 2.8e-42
Identity = 97/145 (66.90%), Postives = 107/145 (73.79%), Query Frame = 0


Query: 1   MRTTKGFRLKIKLPKIFKRRTTSNPFSKLFALATASFSRPDAYSRLNRVRNGPEAAAPKG 60
           MRTT+GF+LKIKL KIF    +SN FS LF+LATASFSR   Y RL             G
Sbjct: 1   MRTTRGFKLKIKLLKIFNLPPSSNLFSNLFSLATASFSRRLGYGRL-EXXXXXXXXXXXG 60

Query: 61  YLAVHVGGAEDERERHLVPLIYFNHPMFGKLLQAAERIYGFQYPGRIVIPVDVSEFEEVT 120
           YL+VHVGG ED+ E HLVP+IYFNHP+FGKLLQAAERIYGF YPGRIVIPV VSEFEEV 
Sbjct: 61  YLSVHVGGPEDQTESHLVPVIYFNHPLFGKLLQAAERIYGFDYPGRIVIPVGVSEFEEVR 120

Query: 121 NCIATAEYGCRKRRSGGYRWRSCGK 146
           NCIA AE+   +RRSGG R R  GK
Sbjct: 121 NCIAAAEHSRSRRRSGGCRHRLWGK 144

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BLAST of Carg25264-RA vs. TAIR10
Match: AT4G22620.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 99.4 bits (246), Expect = 2.0e-21
Identity = 61/157 (38.85%), Postives = 93/157 (59.24%), Query Frame = 0


Query: 1   MRTTKGFRLKIKLPKIFK-----RRTTS----------NPFSKLFALATASFSRPDAYSR 60
           M+  +GF++  +  KIFK     RR  +          NP +K+++LA     R    +R
Sbjct: 1   MKRLRGFKIGHRFVKIFKWIIRSRRNQTGKRQCLTGILNPVTKIYSLARRCLRR--GANR 60

Query: 61  L--------NRVRNGPEA-AAPKGYLAVHVGGAEDERERHLVPLIYFNHPMFGKLLQAAE 120
           L         R+ N P+    P+G+L VHVG + ++  R +VP+IYFNHP+FG+LL+ AE
Sbjct: 61  LCGGMKPGQTRLGNEPKTPTVPRGHLVVHVGESGEDTRRVVVPVIYFNHPLFGELLEQAE 120

Query: 121 RIYGFQYPGRIVIPVDVSEFEEVTNCIATAEYGCRKR 134
           R+YGF+ PGRI+IP  VS+FE+V   IA  ++ CR++
Sbjct: 121 RVYGFEQPGRIMIPCRVSDFEKVQMRIAAWDH-CRRK 154

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BLAST of Carg25264-RA vs. TAIR10
Match: AT4G12410.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 93.6 bits (231), Expect = 1.1e-19
Identity = 57/154 (37.01%), Postives = 85/154 (55.19%), Query Frame = 0


Query: 1   MRTTKGFRLKIKLPKIFK-------RRTTSNPFSKLFALAT-----------ASFSRPDA 60
           M+  +GF++  +  KIFK           +NP + + +LA             S   P  
Sbjct: 1   MKRVRGFKIGHRFVKIFKWIPRNRCPTRITNPVTGIRSLARCLSRGAKRLCGGSKKNPGQ 60

Query: 61  YS-RLNRVRNGPEAAAPKGYLAVHVGGAEDERERHLVPLIYFNHPMFGKLLQAAERIYGF 120
              RL +         P+G+L VHVG ++D+  R +VP+IYFNHP+FG+LL+ AER++GF
Sbjct: 61  NQIRLGKDPKKSNRVVPRGHLVVHVGESDDDTRRVVVPVIYFNHPLFGELLEQAERVHGF 120

Query: 121 QYPGRIVIPVDVSEFEEVTNCIATAEYGCRKRRS 136
             PGRI IP  VS+FE+V   IA  ++ CR++ S
Sbjct: 121 DQPGRITIPCRVSDFEKVQLRIAAWDH-CRRKNS 153

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BLAST of Carg25264-RA vs. TAIR10
Match: AT2G45210.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 77.4 bits (189), Expect = 8.0e-15
Identity = 38/88 (43.18%), Postives = 57/88 (64.77%), Query Frame = 0


Query: 38  SRPDAYSRLNRVRNGPEAAAPKGYLAVHVGGAEDERERHLVPLIYFNHPMFGKLLQAAER 97
           +R  AY  ++  +  P    P+G+LA++VG  + +  R LVP++YFNHP+FG+LL+ AE+
Sbjct: 63  TRRSAYIPVDHKKADP---VPRGHLAIYVGQKDGDCHRVLVPIVYFNHPLFGELLREAEK 122

Query: 98  IYGFQYPGRIVIPVDVSEFEEVTNCIAT 126
            YGF + G I IP   S+FE V   IA+
Sbjct: 123 EYGFCHEGGITIPCLYSDFERVKTRIAS 147

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BLAST of Carg25264-RA vs. TAIR10
Match: AT3G60690.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 73.9 bits (180), Expect = 8.9e-14
Identity = 34/83 (40.96%), Postives = 52/83 (62.65%), Query Frame = 0


Query: 49  VRNGPEAAAPKGYLAVHVGGAEDERERHLVPLIYFNHPMFGKLLQAAERIYGFQYPGRIV 108
           +R  P+   PKG+ AV++G  + + +R LVP++YFNHP+FG+LL+ AE  +GF   G I 
Sbjct: 81  IREKPD-PVPKGHSAVYIGKKDGDFQRVLVPIVYFNHPLFGELLREAEEEFGFSQEGGIT 140

Query: 109 IPVDVSEFEEVTNCIATAEYGCR 132
           IP   S+F+ V   I +    C+
Sbjct: 141 IPCPYSDFKRVQTRIESGSGFCK 162

[Close]

BLAST of Carg25264-RA vs. TAIR10
Match: AT3G61900.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 73.6 bits (179), Expect = 1.2e-13
Identity = 33/66 (50.00%), Postives = 44/66 (66.67%), Query Frame = 0


Query: 58  PKGYLAVHVGGAEDERERHLVPLIYFNHPMFGKLLQAAERIYGFQYPGRIVIPVDVSEFE 117
           PKG LA+ VG  E+E++R +VP+ YFNHP+F +LL+ AE  YGF+  G I IP  V  F 
Sbjct: 31  PKGCLAIKVGSKEEEKQRFVVPVFYFNHPLFMQLLREAEEEYGFEQKGTITIPCHVEVFR 90

Query: 118 EVTNCI 124
            V + I
Sbjct: 91  YVQDMI 96

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BLAST of Carg25264-RA vs. Swiss-Prot
Match: sp|O22150|SAU36_ARATH (Auxin-responsive protein SAUR36 OS=Arabidopsis thaliana OX=3702 GN=SAUR36 PE=2 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.4e-13
Identity = 38/88 (43.18%), Postives = 57/88 (64.77%), Query Frame = 0


Query: 38  SRPDAYSRLNRVRNGPEAAAPKGYLAVHVGGAEDERERHLVPLIYFNHPMFGKLLQAAER 97
           +R  AY  ++  +  P    P+G+LA++VG  + +  R LVP++YFNHP+FG+LL+ AE+
Sbjct: 63  TRRSAYIPVDHKKADP---VPRGHLAIYVGQKDGDCHRVLVPIVYFNHPLFGELLREAEK 122

Query: 98  IYGFQYPGRIVIPVDVSEFEEVTNCIAT 126
            YGF + G I IP   S+FE V   IA+
Sbjct: 123 EYGFCHEGGITIPCLYSDFERVKTRIAS 147

[Close]

BLAST of Carg25264-RA vs. Swiss-Prot
Match: sp|Q9ZUZ3|SAU32_ARATH (Auxin-responsive protein SAUR32 OS=Arabidopsis thaliana OX=3702 GN=SAUR32 PE=2 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 7.9e-12
Identity = 34/75 (45.33%), Postives = 48/75 (64.00%), Query Frame = 0


Query: 45  RLNRVRNGPEAAAPKGYLAVHVGGAEDERERHLVPLIYFNHPMFGKLLQAAERIYGFQYP 104
           +L+R ++      PKG LA+ VG   +E++R +VP++YFNHP+F +LL+ AE  YGF   
Sbjct: 12  QLHRKQSVKVKDVPKGCLAIKVGSQGEEQQRFIVPVLYFNHPLFMQLLKEAEDEYGFDQK 71

Query: 105 GRIVIPVDVSEFEEV 120
           G I IP  V EF  V
Sbjct: 72  GTITIPCHVEEFRYV 86

[Close]

BLAST of Carg25264-RA vs. Swiss-Prot
Match: sp|P33081|AX15A_SOYBN (Auxin-induced protein 15A OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 4.8e-09
Identity = 33/81 (40.74%), Postives = 50/81 (61.73%), Query Frame = 0


Query: 45  RLNRVRNGPEAA-APKGYLAVHVGGAEDERERHLVPLIYFNHPMFGKLLQAAERIYGFQY 104
           RL  +R   +AA APKGYLAV+VG   ++ +R ++P+ Y N P F  LL  AE  +G+ +
Sbjct: 4   RLPGIRKASKAADAPKGYLAVYVG---EKLKRFVIPVSYLNQPSFQDLLSQAEEEFGYDH 63

Query: 105 P-GRIVIPVDVSEFEEVTNCI 124
           P G + IP     F+ +T+C+
Sbjct: 64  PMGGLTIPCSEDVFQCITSCL 81

[Close]

BLAST of Carg25264-RA vs. Swiss-Prot
Match: sp|Q9FK62|SAU24_ARATH (Auxin-responsive protein SAUR24 OS=Arabidopsis thaliana OX=3702 GN=SAUR24 PE=2 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 6.3e-09
Identity = 32/71 (45.07%), Postives = 45/71 (63.38%), Query Frame = 0


Query: 52  GPEAAAPKGYLAVHVGGAEDERERHLVPLIYFNHPMFGKLLQAAERIYGFQYP-GRIVIP 111
           G  +AAPKG+LAV+VG  E +++R+LVP+ Y N P F  LL  +E  +GF +P G + IP
Sbjct: 19  GAGSAAPKGFLAVYVG--ESQKKRYLVPVSYLNQPSFQALLSKSEEEFGFDHPMGGLTIP 78

Query: 112 VDVSEFEEVTN 122
                F  VT+
Sbjct: 79  CPEDTFINVTS 87

[Close]

BLAST of Carg25264-RA vs. Swiss-Prot
Match: sp|Q9FJG0|SAU20_ARATH (Auxin-responsive protein SAUR20 OS=Arabidopsis thaliana OX=3702 GN=SAUR20 PE=2 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 8.2e-09
Identity = 31/68 (45.59%), Postives = 44/68 (64.71%), Query Frame = 0


Query: 55  AAAPKGYLAVHVGGAEDERERHLVPLIYFNHPMFGKLLQAAERIYGFQYP-GRIVIPVDV 114
           +AAPKG+LAV+VG  E +++R+LVP+ Y N P F  LL  +E  +GF +P G + IP   
Sbjct: 22  SAAPKGFLAVYVG--ESQKKRYLVPISYLNQPSFQALLSKSEEEFGFDHPMGGLTIPCPE 81

Query: 115 SEFEEVTN 122
             F  VT+
Sbjct: 82  DTFINVTS 87

[Close]

BLAST of Carg25264-RA vs. TrEMBL
Match: tr|A0A1S3BLN7|A0A1S3BLN7_CUCME (auxin-responsive protein SAUR32 OS=Cucumis melo OX=3656 GN=LOC103490920 PE=4 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 3.8e-51
Identity = 113/151 (74.83%), Postives = 118/151 (78.15%), Query Frame = 0


Query: 2   RTTKGFRLKIKLPKIFKRR-------TTSNPFSKLFALATASFSRPDAYSRLNRVRNGPE 61
           R TKGF+LKIKL KIFK R       T SNPFSKLF+LATA FSR   Y+RLNRVR+ P 
Sbjct: 3   RRTKGFKLKIKLLKIFKWRTHFFNLHTYSNPFSKLFSLATAPFSRRVGYARLNRVRSTPA 62

Query: 62  AAAPKGYLAVHVGGAEDERERHLVPLIYFNHPMFGKLLQAAERIYGFQYPGRIVIPVDVS 121
            A PKGYLAVHVGG EDE ERHLVP+IYFNHPMF KLLQAAE IYGF YPGRIVIPVDVS
Sbjct: 63  VATPKGYLAVHVGGPEDETERHLVPVIYFNHPMFRKLLQAAEVIYGFDYPGRIVIPVDVS 122

Query: 122 EFEEVTNCIATAEYGCRKRRSGGYRWRSCGK 146
           EFEEV N IA AE G   RRSGGYR R CGK
Sbjct: 123 EFEEVKNGIAAAENGRYCRRSGGYRRRRCGK 153

[Close]

BLAST of Carg25264-RA vs. TrEMBL
Match: tr|A0A0A0L5M2|A0A0A0L5M2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G035310 PE=4 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 2.7e-49
Identity = 110/152 (72.37%), Postives = 118/152 (77.63%), Query Frame = 0


Query: 2   RTTKGFRLKIKLPKIFKRRTT-------SNPFSKLFALATASFSRPDAYSRLNRVRNGPE 61
           RTTKGF+LK+KL K+FK RT        SNPFSKLF+LAT  FSRP  Y+RLNRVR+ P 
Sbjct: 3   RTTKGFKLKLKLLKVFKWRTPFFNLHTYSNPFSKLFSLATDPFSRPVRYARLNRVRSTPP 62

Query: 62  AAAPKGYLAVHVGGAEDERERHLVPLIYFNHPMFGKLLQAAERIYGFQYPGRIVIPVDVS 121
            A PKGYLAVHVGG E+ERERHLVP+IYFNHPMF KLLQAAE IYGF YPGRIVIPVDVS
Sbjct: 63  VATPKGYLAVHVGGPENERERHLVPVIYFNHPMFRKLLQAAEVIYGFDYPGRIVIPVDVS 122

Query: 122 EFEEVTNCIATAEYG-CRKRRSGGYRWRSCGK 146
           EFEEV N IA  E G C  RR G  RWR CGK
Sbjct: 123 EFEEVKNGIAATENGRCCPRRGGYRRWR-CGK 153

[Close]

BLAST of Carg25264-RA vs. TrEMBL
Match: tr|A0A2P6P831|A0A2P6P831_ROSCH (Putative small auxin-up RNA OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr7g0202161 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 4.8e-22
Identity = 69/167 (41.32%), Postives = 100/167 (59.88%), Query Frame = 0


Query: 1   MRTTKGFRLKI-KLPKIFK-----RR-------------TTSNPFSKLFALATA------ 60
           M+ ++GFRL++ KL KIFK     RR              T NP SK F LA +      
Sbjct: 6   MKKSRGFRLRVHKLVKIFKWIVRPRREPVRYKRLESPAARTYNPISKFFTLARSLRRGAK 65

Query: 61  SFSRPDA-YSRLNRV-RNGPEAAAPKGYLAVHVGGAEDERERHLVPLIYFNHPMFGKLLQ 120
               P++ Y R+ +    G     PKG++AV+VG ++D+ +R+LVP+IYFNHP+FG+LL+
Sbjct: 66  QLCFPNSGYMRVGQAPEEGKPVVVPKGHMAVYVGESDDDTQRYLVPVIYFNHPLFGELLK 125

Query: 121 AAERIYGFQYPGRIVIPVDVSEFEEVTNCIATAEYGCRKRRSGGYRW 141
            AE++YGF +PGRIVIP   SEFE+V   IA  ++   +RR+   R+
Sbjct: 126 EAEKVYGFNHPGRIVIPCGASEFEKVQMRIAAGDHCQWRRRNSNRRY 172

[Close]

BLAST of Carg25264-RA vs. TrEMBL
Match: tr|M5W8K9|M5W8K9_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_5G076200 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 8.2e-22
Identity = 69/162 (42.59%), Postives = 94/162 (58.02%), Query Frame = 0


Query: 1   MRTTKGFRLKIKLPKIFK-----RRTTS------------NPFSKLFALA----TASFSR 60
           MR  +GFRL+ KL +IFK     R+  +            NP SK F LA      +   
Sbjct: 1   MRKNRGFRLRHKLVRIFKWIIRPRKDPNRCQRLEPPTQNYNPISKFFTLARFLRRGAKQL 60

Query: 61  PDAYSRLNRVRNGP-------EAAAPKGYLAVHVGGAEDERERHLVPLIYFNHPMFGKLL 120
             A S   R+R  P         + PKG+LAV+VG + D+ +R+LVP++YFNHP+FG LL
Sbjct: 61  CSANSGYIRIREAPVETKVAKPVSVPKGHLAVYVGESGDDTQRYLVPVMYFNHPLFGDLL 120

Query: 121 QAAERIYGFQYPGRIVIPVDVSEFEEVTNCIATAEYGCRKRR 135
           + AE++YGF +PGRIVIP +VSEFE+V   IA  +   R+RR
Sbjct: 121 KEAEKVYGFNHPGRIVIPCEVSEFEKVQMKIAAGDQCPRRRR 162

[Close]

BLAST of Carg25264-RA vs. TrEMBL
Match: tr|W9RGH3|W9RGH3_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_019007 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 6.9e-21
Identity = 72/167 (43.11%), Postives = 94/167 (56.29%), Query Frame = 0


Query: 1   MRTTKGFRLKIKLPKIFK------RRTTS---------NPFSKLFALA------------ 60
           MR  +GF+L+ KL KI K      RRT           NP +K   LA            
Sbjct: 1   MRKARGFKLRGKLVKICKWVIARPRRTRKSSNFSNRKRNPITKFLNLARFLRRGVKQLTM 60

Query: 61  -TASFSRP-DAYSRLNR---VRNGP-EAAAPKGYLAVHVGGAEDERERHLVPLIYFNHPM 120
              SFS P   Y  L+    V   P     PKG+LAV+VG ++DE +R+LVP+IYFNHP+
Sbjct: 61  CNISFSSPKSGYVPLDHEDPVDQKPGRDGIPKGHLAVYVGESQDETQRYLVPVIYFNHPL 120

Query: 121 FGKLLQAAERIYGFQYPGRIVIPVDVSEFEEVTNCIATAEYGCRKRR 135
           FG+LL+ AE++YGF +PGRI IP   SEFE+V   IA+ E  C++RR
Sbjct: 121 FGELLKEAEKVYGFNHPGRITIPCGASEFEKVQMRIASGEEYCQRRR 167

The following BLAST results are available for this feature:

BLAST of Carg25264-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022923260.1	8.7e-76	97.93	auxin-responsive protein SAUR32-like [Cucurbita moschata]	[more]
XP_023552967.1	3.7e-74	96.55	auxin-responsive protein SAUR32-like [Cucurbita pepo subsp. pepo]	[more]
XP_008448892.1	5.7e-51	74.83	PREDICTED: auxin-responsive protein SAUR32 [Cucumis melo]	[more]
XP_004147976.1	4.1e-49	72.37	PREDICTED: uncharacterized protein LOC101210462 [Cucumis sativus] >KGN55902.1 hy...	[more]
XP_023005960.1	2.8e-42	66.90	auxin-induced protein 15A-like [Cucurbita maxima]	[more]

BLAST of Carg25264-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT4G22620.1	2.0e-21	38.85	SAUR-like auxin-responsive protein family	[more]
AT4G12410.1	1.1e-19	37.01	SAUR-like auxin-responsive protein family	[more]
AT2G45210.1	8.0e-15	43.18	SAUR-like auxin-responsive protein family	[more]
AT3G60690.1	8.9e-14	40.96	SAUR-like auxin-responsive protein family	[more]
AT3G61900.1	1.2e-13	50.00	SAUR-like auxin-responsive protein family	[more]

BLAST of Carg25264-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|O22150\|SAU36_ARATH	1.4e-13	43.18	Auxin-responsive protein SAUR36 OS=Arabidopsis thaliana OX=3702 GN=SAUR36 PE=2 S...	[more]
sp\|Q9ZUZ3\|SAU32_ARATH	7.9e-12	45.33	Auxin-responsive protein SAUR32 OS=Arabidopsis thaliana OX=3702 GN=SAUR32 PE=2 S...	[more]
sp\|P33081\|AX15A_SOYBN	4.8e-09	40.74	Auxin-induced protein 15A OS=Glycine max OX=3847 PE=2 SV=1	[more]
sp\|Q9FK62\|SAU24_ARATH	6.3e-09	45.07	Auxin-responsive protein SAUR24 OS=Arabidopsis thaliana OX=3702 GN=SAUR24 PE=2 S...	[more]
sp\|Q9FJG0\|SAU20_ARATH	8.2e-09	45.59	Auxin-responsive protein SAUR20 OS=Arabidopsis thaliana OX=3702 GN=SAUR20 PE=2 S...	[more]

BLAST of Carg25264-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BLN7\|A0A1S3BLN7_CUCME	3.8e-51	74.83	auxin-responsive protein SAUR32 OS=Cucumis melo OX=3656 GN=LOC103490920 PE=4 SV=...	[more]
tr\|A0A0A0L5M2\|A0A0A0L5M2_CUCSA	2.7e-49	72.37	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G035310 PE=4 SV=1	[more]
tr\|A0A2P6P831\|A0A2P6P831_ROSCH	4.8e-22	41.32	Putative small auxin-up RNA OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr7g0202161 ...	[more]
tr\|M5W8K9\|M5W8K9_PRUPE	8.2e-22	42.59	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_5G076200 PE=4 SV=1	[more]
tr\|W9RGH3\|W9RGH3_9ROSA	6.9e-21	43.11	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_019007 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Biological Process**
Term	Definition
GO:0009733	response to auxin

Vocabulary: **INTERPRO**
Term	Definition
IPR003676	SAUR_fam

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009733	response to auxin
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg25264	Carg25264	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg25264-RA.exon.1	Carg25264-RA.exon.1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg25264-RA.CDS.1	Carg25264-RA.CDS.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg25264-RA	Carg25264-RA-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003676	Small auxin-up RNA	PFAM	PF02519	Auxin_inducible	coord: 51..122 e-value: 1.6E-17 score: 63.3
None	No IPR available	PANTHER	PTHR31374	FAMILY NOT NAMED	coord: 45..131
None	No IPR available	PANTHER	PTHR31374:SF42	AUXIN-RESPONSIVE FAMILY PROTEIN	coord: 45..131