Carg25065-RA (mRNA) Silver-seed gourd

Overview
NameCarg25065-RA
TypemRNA
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionNucleoside diphosphate kinase
LocationCucurbita_argyrosperma_scaffold_201 : 371893 .. 372318 (-)
Sequence length336
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTGTGGATCGTGCTTTTGCTGAGAACCATTACTCAGATCTTGCTGGAAAGCCTTTCTTCAATGGTTTGATCGAGTACATCATTTCCGGCCCAGTCGTTGCCATGATCTGGGAGGGGAAGAATGTTGTTGCAACCGGTAGGAAGATCATTGGAGCCACCAAGCCAGCAGATTCTGATGTAGGAACCATCCGTGGTGACTTTGCAATTGATGTTGGCAGGTAATGATCTGTGAATTGAATGTCTGCTAATAGAAGTTGATAAGGAAAACCTGATGTCTGGATGATTGATTGTTGTATATTACTTTTCAGGAACATCATTCATGGAAGCGATTCCGTCGAAAGTGCGAGGAAGGAAATTGCTCTGTGGTTCTCGGAGGGCCCTGTTAACTGGCAGAGCAGCCTTCATTCTTGGATCTACGAGTGA

mRNA sequence

ATGTCTGTGGATCGTGCTTTTGCTGAGAACCATTACTCAGATCTTGCTGGAAAGCCTTTCTTCAATGGTTTGATCGAGTACATCATTTCCGGCCCAGTCGTTGCCATGATCTGGGAGGGGAAGAATGTTGTTGCAACCGGTAGGAAGATCATTGGAGCCACCAAGCCAGCAGATTCTGATGTAGGAACCATCCGTGGTGACTTTGCAATTGATGTTGGCAGGAACATCATTCATGGAAGCGATTCCGTCGAAAGTGCGAGGAAGGAAATTGCTCTGTGGTTCTCGGAGGGCCCTGTTAACTGGCAGAGCAGCCTTCATTCTTGGATCTACGAGTGA

Coding sequence (CDS)

ATGTCTGTGGATCGTGCTTTTGCTGAGAACCATTACTCAGATCTTGCTGGAAAGCCTTTCTTCAATGGTTTGATCGAGTACATCATTTCCGGCCCAGTCGTTGCCATGATCTGGGAGGGGAAGAATGTTGTTGCAACCGGTAGGAAGATCATTGGAGCCACCAAGCCAGCAGATTCTGATGTAGGAACCATCCGTGGTGACTTTGCAATTGATGTTGGCAGGAACATCATTCATGGAAGCGATTCCGTCGAAAGTGCGAGGAAGGAAATTGCTCTGTGGTTCTCGGAGGGCCCTGTTAACTGGCAGAGCAGCCTTCATTCTTGGATCTACGAGTGA

Protein sequence

MSVDRAFAENHYSDLAGKPFFNGLIEYIISGPVVAMIWEGKNVVATGRKIIGATKPADSDVGTIRGDFAIDVGRNIIHGSDSVESARKEIALWFSEGPVNWQSSLHSWIYE
Homology
[Close]
BLAST of Carg25065-RA vs. NCBI nr
Match: AGC13076.1 (nucleotide diphosphate kinases 1 [Cucurbita maxima])

HSP 1 Score: 231.9 bits (590), Expect = 1.1e-57
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 0 

Query: 1   MSVDRAFAENHYSDLAGKPFFNGLIEYIISGPVVAMIWEGKNVVATGRKIIGATKPADSD 60
           MSVDRAFAENHYSDLAGKPFFNGLIEYIISGPVVAMIWEGKNVVATGRKIIGATKPADSD
Sbjct: 38  MSVDRAFAENHYSDLAGKPFFNGLIEYIISGPVVAMIWEGKNVVATGRKIIGATKPADSD 97

Query: 61  VGTIRGDFAIDVGRNIIHGSDSVESARKEIALWFSEGPVNWQSSLHSWIYE 112
           VGTIRGDFAIDVGRNIIHGSDSVESARKEIALWFSEGPVNWQSSLHSWIYE
Sbjct: 98  VGTIRGDFAIDVGRNIIHGSDSVESARKEIALWFSEGPVNWQSSLHSWIYE 148

[Close]
BLAST of Carg25065-RA vs. NCBI nr
Match: XP_022935681.1 (nucleoside diphosphate kinase [Cucurbita moschata] >XP_022974268.1 nucleoside diphosphate kinase [Cucurbita maxima] >XP_023540209.1 nucleoside diphosphate kinase isoform X1 [Cucurbita pepo subsp. pepo] >XP_023540210.1 nucleoside diphosphate kinase isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 231.9 bits (590), Expect = 1.1e-57
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 0 

Query: 1   MSVDRAFAENHYSDLAGKPFFNGLIEYIISGPVVAMIWEGKNVVATGRKIIGATKPADSD 60
           MSVDRAFAENHYSDLAGKPFFNGLIEYIISGPVVAMIWEGKNVVATGRKIIGATKPADSD
Sbjct: 38  MSVDRAFAENHYSDLAGKPFFNGLIEYIISGPVVAMIWEGKNVVATGRKIIGATKPADSD 97

Query: 61  VGTIRGDFAIDVGRNIIHGSDSVESARKEIALWFSEGPVNWQSSLHSWIYE 112
           VGTIRGDFAIDVGRNIIHGSDSVESARKEIALWFSEGPVNWQSSLHSWIYE
Sbjct: 98  VGTIRGDFAIDVGRNIIHGSDSVESARKEIALWFSEGPVNWQSSLHSWIYE 148

[Close]
BLAST of Carg25065-RA vs. NCBI nr
Match: XP_008437761.1 (PREDICTED: nucleoside diphosphate kinase [Cucumis melo])

HSP 1 Score: 228.4 bits (581), Expect = 1.2e-56
Identity = 109/111 (98.20%), Postives = 109/111 (98.20%), Query Frame = 0 

Query: 1   MSVDRAFAENHYSDLAGKPFFNGLIEYIISGPVVAMIWEGKNVVATGRKIIGATKPADSD 60
           MSVDRAFAENHYSDLAGKPFFNGLIEYIISGPVVAMIWEGKNVVATGRKIIGATKP DSD
Sbjct: 38  MSVDRAFAENHYSDLAGKPFFNGLIEYIISGPVVAMIWEGKNVVATGRKIIGATKPVDSD 97

Query: 61  VGTIRGDFAIDVGRNIIHGSDSVESARKEIALWFSEGPVNWQSSLHSWIYE 112
           VGTIRGDFAIDVGRNIIHGSDSVESARKEIALWF EGPVNWQSSLHSWIYE
Sbjct: 98  VGTIRGDFAIDVGRNIIHGSDSVESARKEIALWFPEGPVNWQSSLHSWIYE 148

[Close]
BLAST of Carg25065-RA vs. NCBI nr
Match: XP_004133759.1 (PREDICTED: nucleoside diphosphate kinase [Cucumis sativus] >KGN56334.1 hypothetical protein Csa_3G116710 [Cucumis sativus])

HSP 1 Score: 225.3 bits (573), Expect = 1.0e-55
Identity = 108/111 (97.30%), Postives = 108/111 (97.30%), Query Frame = 0 

Query: 1   MSVDRAFAENHYSDLAGKPFFNGLIEYIISGPVVAMIWEGKNVVATGRKIIGATKPADSD 60
           MSVDRAFAENHYSDLAGKPFFNGLIEYIISGPVVAMIWEGKNVVATGRKIIGATKP DSD
Sbjct: 38  MSVDRAFAENHYSDLAGKPFFNGLIEYIISGPVVAMIWEGKNVVATGRKIIGATKPVDSD 97

Query: 61  VGTIRGDFAIDVGRNIIHGSDSVESARKEIALWFSEGPVNWQSSLHSWIYE 112
           VGTIRGDFAIDVGRNIIHGSDSVESARKEIALWF EGPV WQSSLHSWIYE
Sbjct: 98  VGTIRGDFAIDVGRNIIHGSDSVESARKEIALWFPEGPVYWQSSLHSWIYE 148

[Close]
BLAST of Carg25065-RA vs. NCBI nr
Match: XP_022152788.1 (nucleoside diphosphate kinase [Momordica charantia])

HSP 1 Score: 223.8 bits (569), Expect = 2.9e-55
Identity = 106/111 (95.50%), Postives = 109/111 (98.20%), Query Frame = 0 

Query: 1   MSVDRAFAENHYSDLAGKPFFNGLIEYIISGPVVAMIWEGKNVVATGRKIIGATKPADSD 60
           MSVDRAFAENHY+DLAGKPFFNGLIEYIISGPVVAMIWEGKNVVATGRKIIGATKP +SD
Sbjct: 38  MSVDRAFAENHYADLAGKPFFNGLIEYIISGPVVAMIWEGKNVVATGRKIIGATKPVESD 97

Query: 61  VGTIRGDFAIDVGRNIIHGSDSVESARKEIALWFSEGPVNWQSSLHSWIYE 112
           VGTIRGDFAIDVGRNIIHGSDSVESARKEIALWF EGPV+WQSSLHSWIYE
Sbjct: 98  VGTIRGDFAIDVGRNIIHGSDSVESARKEIALWFPEGPVSWQSSLHSWIYE 148

[Close]
BLAST of Carg25065-RA vs. TAIR10
Match: AT4G09320.1 (Nucleoside diphosphate kinase family protein)

HSP 1 Score: 195.3 bits (495), Expect = 2.0e-50
Identity = 87/111 (78.38%), Postives = 101/111 (90.99%), Query Frame = 0 

Query: 1   MSVDRAFAENHYSDLAGKPFFNGLIEYIISGPVVAMIWEGKNVVATGRKIIGATKPADSD 60
           +SV+R+FAE HY DL+ K FF+GL++YI+SGPVVAMIWEGKNVV TGRKIIGAT PA S+
Sbjct: 58  ISVERSFAEKHYEDLSSKSFFSGLVDYIVSGPVVAMIWEGKNVVLTGRKIIGATNPAASE 117

Query: 61  VGTIRGDFAIDVGRNIIHGSDSVESARKEIALWFSEGPVNWQSSLHSWIYE 112
            GTIRGDFAID+GRN+IHGSDSVESARKEIALWF +GPVNWQSS+H W+YE
Sbjct: 118 PGTIRGDFAIDIGRNVIHGSDSVESARKEIALWFPDGPVNWQSSVHPWVYE 168

[Close]
BLAST of Carg25065-RA vs. TAIR10
Match: AT4G23900.1 (Nucleoside diphosphate kinase family protein)

HSP 1 Score: 135.2 bits (339), Expect = 2.5e-32
Identity = 63/111 (56.76%), Postives = 80/111 (72.07%), Query Frame = 0 

Query: 1   MSVDRAFAENHYSDLAGKPFFNGLIEYIISGPVVAMIWEGKNVVATGRKIIGATKPADSD 60
           M   + FA+ HY DL  +PFFNGL  ++ SGPVVAM+WEG+ V+  GRK+IGAT P  S+
Sbjct: 124 MVPSKGFAQKHYHDLKERPFFNGLCNFLSSGPVVAMVWEGEGVIRYGRKLIGATDPQKSE 183

Query: 61  VGTIRGDFAIDVGRNIIHGSDSVESARKEIALWFS-EGPVNWQSSLHSWIY 111
            GTIRGD A+ VGRNIIHGSD  E+A+ EI+LWF  E  V++ S+   WIY
Sbjct: 184 PGTIRGDLAVVVGRNIIHGSDGPETAKDEISLWFKPEELVSYTSNAEKWIY 234

[Close]
BLAST of Carg25065-RA vs. TAIR10
Match: AT5G63310.1 (nucleoside diphosphate kinase 2)

HSP 1 Score: 133.7 bits (335), Expect = 7.2e-32
Identity = 61/108 (56.48%), Postives = 76/108 (70.37%), Query Frame = 0 

Query: 5   RAFAENHYSDLAGKPFFNGLIEYIISGPVVAMIWEGKNVVATGRKIIGATKPADSDVGTI 64
           +  AE HY DL+ K FF  LIEYI SGPVV M WEG  VVA+ RK+IG T P  ++ GTI
Sbjct: 124 KELAEEHYKDLSAKSFFPNLIEYITSGPVVCMAWEGVGVVASARKLIGKTDPLQAEPGTI 183

Query: 65  RGDFAIDVGRNIIHGSDSVESARKEIALWFSEGPV-NWQSSLHSWIYE 112
           RGD A+  GRNI+HGSDS E+ ++EI LWF EG +  W S+L +W+ E
Sbjct: 184 RGDLAVQTGRNIVHGSDSPENGKREIGLWFKEGELCKWDSALATWLRE 231

[Close]
BLAST of Carg25065-RA vs. TAIR10
Match: AT4G11010.1 (nucleoside diphosphate kinase 3)

HSP 1 Score: 131.3 bits (329), Expect = 3.6e-31
Identity = 59/105 (56.19%), Postives = 78/105 (74.29%), Query Frame = 0 

Query: 7   FAENHYSDLAGKPFFNGLIEYIISGPVVAMIWEGKNVVATGRKIIGATKPADSDVGTIRG 66
           FA+ HY DL  +PFFNGL +++ SGPV+AM+WEG  V+  GRK+IGAT P  S+ GTIRG
Sbjct: 131 FAQKHYHDLKERPFFNGLCDFLSSGPVIAMVWEGDGVIRYGRKLIGATDPQKSEPGTIRG 190

Query: 67  DFAIDVGRNIIHGSDSVESARKEIALWFS-EGPVNWQSSLHSWIY 111
           D A+ VGRNIIHGSD  E+A+ EI+LWF  +  V++ S+   W+Y
Sbjct: 191 DLAVTVGRNIIHGSDGPETAKDEISLWFKPQELVSYTSNSEKWLY 235

[Close]
BLAST of Carg25065-RA vs. TAIR10
Match: AT1G17410.1 (Nucleoside diphosphate kinase family protein)

HSP 1 Score: 62.4 bits (150), Expect = 2.0e-10
Identity = 34/97 (35.05%), Postives = 53/97 (54.64%), Query Frame = 0 

Query: 3   VDRAFAENHYSDLAGKPFFNGLIEYIISGPVVAMIWEGKNVVATGRKIIGAT---KPADS 62
           +D+  A   Y + + + FF  L+ Y+ SGPV+ M+ E +N V+  R +IG T   K   S
Sbjct: 71  LDKETASAFYEEHSSRSFFPHLVTYMTSGPVLVMVLEKRNAVSDWRDLIGPTDAEKAKIS 130

Query: 63  DVGTIRGDFAIDVGRNIIHGSDSVESARKEIALWFSE 97
              +IR     +  +N +HGSDS  SA +EI  +F +
Sbjct: 131 HPHSIRALCGKNSQKNCVHGSDSTSSAEREIKFFFKD 167

[Close]
BLAST of Carg25065-RA vs. Swiss-Prot
Match: sp|P47922|NDK1_PEA (Nucleoside diphosphate kinase 1 OS=Pisum sativum OX=3888 GN=NDPK1 PE=2 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 2.1e-49
Identity = 88/111 (79.28%), Postives = 101/111 (90.99%), Query Frame = 0 

Query: 1   MSVDRAFAENHYSDLAGKPFFNGLIEYIISGPVVAMIWEGKNVVATGRKIIGATKPADSD 60
           ++V+RAFAE HY+DL+ KPFF+GL++YIISGPVVAMIWEGKNVV TGRKIIGAT PA S+
Sbjct: 39  VNVERAFAEKHYADLSAKPFFSGLVDYIISGPVVAMIWEGKNVVTTGRKIIGATNPAQSE 98

Query: 61  VGTIRGDFAIDVGRNIIHGSDSVESARKEIALWFSEGPVNWQSSLHSWIYE 112
            GTIRGDFAID+GRN+IHGSD+VESA KEIALWF EG  NW+SSLHSWIYE
Sbjct: 99  PGTIRGDFAIDIGRNVIHGSDAVESANKEIALWFPEGAANWESSLHSWIYE 149

[Close]
BLAST of Carg25065-RA vs. Swiss-Prot
Match: sp|P47920|NDKB_FLABI (Nucleoside diphosphate kinase B OS=Flaveria bidentis OX=4224 PE=2 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 2.1e-49
Identity = 88/111 (79.28%), Postives = 100/111 (90.09%), Query Frame = 0 

Query: 1   MSVDRAFAENHYSDLAGKPFFNGLIEYIISGPVVAMIWEGKNVVATGRKIIGATKPADSD 60
           ++VD+AFAE HY+DL+ KPFFNGL+EYIISGPVVAM+WEGKNVV TGRKIIGAT PA+S 
Sbjct: 38  LTVDQAFAEKHYADLSAKPFFNGLVEYIISGPVVAMVWEGKNVVTTGRKIIGATNPAESA 97

Query: 61  VGTIRGDFAIDVGRNIIHGSDSVESARKEIALWFSEGPVNWQSSLHSWIYE 112
            GTIRGDFAID+GRN+IHGSD+VESA+KEIALWF EG  NW SSLH WIYE
Sbjct: 98  PGTIRGDFAIDIGRNVIHGSDAVESAKKEIALWFPEGVANWSSSLHPWIYE 148

[Close]
BLAST of Carg25065-RA vs. Swiss-Prot
Match: sp|P39207|NDK1_ARATH (Nucleoside diphosphate kinase 1 OS=Arabidopsis thaliana OX=3702 GN=NDK1 PE=1 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 3.6e-49
Identity = 87/111 (78.38%), Postives = 101/111 (90.99%), Query Frame = 0 

Query: 1   MSVDRAFAENHYSDLAGKPFFNGLIEYIISGPVVAMIWEGKNVVATGRKIIGATKPADSD 60
           +SV+R+FAE HY DL+ K FF+GL++YI+SGPVVAMIWEGKNVV TGRKIIGAT PA S+
Sbjct: 38  ISVERSFAEKHYEDLSSKSFFSGLVDYIVSGPVVAMIWEGKNVVLTGRKIIGATNPAASE 97

Query: 61  VGTIRGDFAIDVGRNIIHGSDSVESARKEIALWFSEGPVNWQSSLHSWIYE 112
            GTIRGDFAID+GRN+IHGSDSVESARKEIALWF +GPVNWQSS+H W+YE
Sbjct: 98  PGTIRGDFAIDIGRNVIHGSDSVESARKEIALWFPDGPVNWQSSVHPWVYE 148

[Close]
BLAST of Carg25065-RA vs. Swiss-Prot
Match: sp|Q96559|NDK_HELAN (Nucleoside diphosphate kinase OS=Helianthus annuus OX=4232 PE=2 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 4.8e-49
Identity = 87/111 (78.38%), Postives = 99/111 (89.19%), Query Frame = 0 

Query: 1   MSVDRAFAENHYSDLAGKPFFNGLIEYIISGPVVAMIWEGKNVVATGRKIIGATKPADSD 60
           ++VD+AFAE HY+DL+ KPFFNGL+EYIISGPVVAM+WEGKNVV TGRKIIGAT PA+S 
Sbjct: 38  LTVDQAFAEKHYADLSAKPFFNGLVEYIISGPVVAMVWEGKNVVTTGRKIIGATNPAESP 97

Query: 61  VGTIRGDFAIDVGRNIIHGSDSVESARKEIALWFSEGPVNWQSSLHSWIYE 112
            GTIRGDFAID+GRN+IHGSD+VESA+KEI LWF EG  NW SSLH WIYE
Sbjct: 98  PGTIRGDFAIDIGRNVIHGSDAVESAKKEIGLWFPEGVANWSSSLHPWIYE 148

[Close]
BLAST of Carg25065-RA vs. Swiss-Prot
Match: sp|O81372|NDK1_MESCR (Nucleoside diphosphate kinase 1 OS=Mesembryanthemum crystallinum OX=3544 GN=NDKP1 PE=2 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 6.2e-49
Identity = 88/111 (79.28%), Postives = 99/111 (89.19%), Query Frame = 0 

Query: 1   MSVDRAFAENHYSDLAGKPFFNGLIEYIISGPVVAMIWEGKNVVATGRKIIGATKPADSD 60
           ++VDR FAE HY+DL+ KPFFNGL+EYI+SGPVVAM+WEGK VV TGRKIIGAT P  S+
Sbjct: 38  INVDRPFAEKHYADLSAKPFFNGLVEYIVSGPVVAMVWEGKGVVLTGRKIIGATNPLASE 97

Query: 61  VGTIRGDFAIDVGRNIIHGSDSVESARKEIALWFSEGPVNWQSSLHSWIYE 112
            GTIRGDFAID+GRN+IHGSD+VESA KEIALWF EG VNWQSSLHSWIYE
Sbjct: 98  PGTIRGDFAIDIGRNVIHGSDAVESATKEIALWFPEGVVNWQSSLHSWIYE 148

[Close]
BLAST of Carg25065-RA vs. TrEMBL
Match: tr|L7S218|L7S218_CUCMA (Nucleoside diphosphate kinase OS=Cucurbita maxima OX=3661 GN=NDPK1 PE=2 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 7.1e-58
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 0 

Query: 1   MSVDRAFAENHYSDLAGKPFFNGLIEYIISGPVVAMIWEGKNVVATGRKIIGATKPADSD 60
           MSVDRAFAENHYSDLAGKPFFNGLIEYIISGPVVAMIWEGKNVVATGRKIIGATKPADSD
Sbjct: 38  MSVDRAFAENHYSDLAGKPFFNGLIEYIISGPVVAMIWEGKNVVATGRKIIGATKPADSD 97

Query: 61  VGTIRGDFAIDVGRNIIHGSDSVESARKEIALWFSEGPVNWQSSLHSWIYE 112
           VGTIRGDFAIDVGRNIIHGSDSVESARKEIALWFSEGPVNWQSSLHSWIYE
Sbjct: 98  VGTIRGDFAIDVGRNIIHGSDSVESARKEIALWFSEGPVNWQSSLHSWIYE 148

[Close]
BLAST of Carg25065-RA vs. TrEMBL
Match: tr|A0A1S3AVC6|A0A1S3AVC6_CUCME (Nucleoside diphosphate kinase OS=Cucumis melo OX=3656 GN=LOC103483100 PE=3 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 7.8e-57
Identity = 109/111 (98.20%), Postives = 109/111 (98.20%), Query Frame = 0 

Query: 1   MSVDRAFAENHYSDLAGKPFFNGLIEYIISGPVVAMIWEGKNVVATGRKIIGATKPADSD 60
           MSVDRAFAENHYSDLAGKPFFNGLIEYIISGPVVAMIWEGKNVVATGRKIIGATKP DSD
Sbjct: 38  MSVDRAFAENHYSDLAGKPFFNGLIEYIISGPVVAMIWEGKNVVATGRKIIGATKPVDSD 97

Query: 61  VGTIRGDFAIDVGRNIIHGSDSVESARKEIALWFSEGPVNWQSSLHSWIYE 112
           VGTIRGDFAIDVGRNIIHGSDSVESARKEIALWF EGPVNWQSSLHSWIYE
Sbjct: 98  VGTIRGDFAIDVGRNIIHGSDSVESARKEIALWFPEGPVNWQSSLHSWIYE 148

[Close]
BLAST of Carg25065-RA vs. TrEMBL
Match: tr|A0A0A0L5L2|A0A0A0L5L2_CUCSA (Nucleoside diphosphate kinase OS=Cucumis sativus OX=3659 GN=Csa_3G116710 PE=3 SV=1)

HSP 1 Score: 225.3 bits (573), Expect = 6.6e-56
Identity = 108/111 (97.30%), Postives = 108/111 (97.30%), Query Frame = 0 

Query: 1   MSVDRAFAENHYSDLAGKPFFNGLIEYIISGPVVAMIWEGKNVVATGRKIIGATKPADSD 60
           MSVDRAFAENHYSDLAGKPFFNGLIEYIISGPVVAMIWEGKNVVATGRKIIGATKP DSD
Sbjct: 38  MSVDRAFAENHYSDLAGKPFFNGLIEYIISGPVVAMIWEGKNVVATGRKIIGATKPVDSD 97

Query: 61  VGTIRGDFAIDVGRNIIHGSDSVESARKEIALWFSEGPVNWQSSLHSWIYE 112
           VGTIRGDFAIDVGRNIIHGSDSVESARKEIALWF EGPV WQSSLHSWIYE
Sbjct: 98  VGTIRGDFAIDVGRNIIHGSDSVESARKEIALWFPEGPVYWQSSLHSWIYE 148

[Close]
BLAST of Carg25065-RA vs. TrEMBL
Match: tr|A0A1U8N814|A0A1U8N814_GOSHI (Nucleoside diphosphate kinase OS=Gossypium hirsutum OX=3635 GN=LOC107945569 PE=3 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 2.7e-49
Identity = 94/111 (84.68%), Postives = 102/111 (91.89%), Query Frame = 0 

Query: 1   MSVDRAFAENHYSDLAGKPFFNGLIEYIISGPVVAMIWEGKNVVATGRKIIGATKPADSD 60
           +SVDR+FAE HY+DL+ KPFFNGL+EYIISGPVVAMIWEGKNVV TGRKIIGAT PA+S 
Sbjct: 38  ISVDRSFAEKHYADLSAKPFFNGLVEYIISGPVVAMIWEGKNVVTTGRKIIGATNPAESA 97

Query: 61  VGTIRGDFAIDVGRNIIHGSDSVESARKEIALWFSEGPVNWQSSLHSWIYE 112
            GTIRGDFAID+GRN+IHGSDSVESARKEIALWF E PVNWQSSLH WIYE
Sbjct: 98  PGTIRGDFAIDIGRNVIHGSDSVESARKEIALWFPECPVNWQSSLHPWIYE 148

[Close]
BLAST of Carg25065-RA vs. TrEMBL
Match: tr|A0A1U8M838|A0A1U8M838_GOSHI (Nucleoside diphosphate kinase OS=Gossypium hirsutum OX=3635 GN=LOC107934002 PE=3 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 2.7e-49
Identity = 94/111 (84.68%), Postives = 102/111 (91.89%), Query Frame = 0 

Query: 1   MSVDRAFAENHYSDLAGKPFFNGLIEYIISGPVVAMIWEGKNVVATGRKIIGATKPADSD 60
           +SVDR+FAE HY+DL+ KPFFNGL+EYIISGPVVAMIWEGKNVV TGRKIIGAT PA+S 
Sbjct: 38  ISVDRSFAEKHYADLSAKPFFNGLVEYIISGPVVAMIWEGKNVVTTGRKIIGATNPAESA 97

Query: 61  VGTIRGDFAIDVGRNIIHGSDSVESARKEIALWFSEGPVNWQSSLHSWIYE 112
            GTIRGDFAID+GRN+IHGSDSVESARKEIALWF E PVNWQSSLH WIYE
Sbjct: 98  PGTIRGDFAIDIGRNVIHGSDSVESARKEIALWFPECPVNWQSSLHPWIYE 148

The following BLAST results are available for this feature:
BLAST of Carg25065-RA vs. NCBI nr
Match NameE-valueIdentityDescription
AGC13076.11.1e-57100.00nucleotide diphosphate kinases 1 [Cucurbita maxima][more]
XP_022935681.11.1e-57100.00nucleoside diphosphate kinase [Cucurbita moschata] >XP_022974268.1 nucleoside di... [more]
XP_008437761.11.2e-5698.20PREDICTED: nucleoside diphosphate kinase [Cucumis melo][more]
XP_004133759.11.0e-5597.30PREDICTED: nucleoside diphosphate kinase [Cucumis sativus] >KGN56334.1 hypotheti... [more]
XP_022152788.12.9e-5595.50nucleoside diphosphate kinase [Momordica charantia][more]
BLAST of Carg25065-RA vs. TAIR10
Match NameE-valueIdentityDescription
AT4G09320.12.0e-5078.38Nucleoside diphosphate kinase family protein[more]
AT4G23900.12.5e-3256.76Nucleoside diphosphate kinase family protein[more]
AT5G63310.17.2e-3256.48nucleoside diphosphate kinase 2[more]
AT4G11010.13.6e-3156.19nucleoside diphosphate kinase 3[more]
AT1G17410.12.0e-1035.05Nucleoside diphosphate kinase family protein[more]
BLAST of Carg25065-RA vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|P47922|NDK1_PEA2.1e-4979.28Nucleoside diphosphate kinase 1 OS=Pisum sativum OX=3888 GN=NDPK1 PE=2 SV=1[more]
sp|P47920|NDKB_FLABI2.1e-4979.28Nucleoside diphosphate kinase B OS=Flaveria bidentis OX=4224 PE=2 SV=1[more]
sp|P39207|NDK1_ARATH3.6e-4978.38Nucleoside diphosphate kinase 1 OS=Arabidopsis thaliana OX=3702 GN=NDK1 PE=1 SV=... [more]
sp|Q96559|NDK_HELAN4.8e-4978.38Nucleoside diphosphate kinase OS=Helianthus annuus OX=4232 PE=2 SV=1[more]
sp|O81372|NDK1_MESCR6.2e-4979.28Nucleoside diphosphate kinase 1 OS=Mesembryanthemum crystallinum OX=3544 GN=NDKP... [more]
BLAST of Carg25065-RA vs. TrEMBL
Match NameE-valueIdentityDescription
tr|L7S218|L7S218_CUCMA7.1e-58100.00Nucleoside diphosphate kinase OS=Cucurbita maxima OX=3661 GN=NDPK1 PE=2 SV=1[more]
tr|A0A1S3AVC6|A0A1S3AVC6_CUCME7.8e-5798.20Nucleoside diphosphate kinase OS=Cucumis melo OX=3656 GN=LOC103483100 PE=3 SV=1[more]
tr|A0A0A0L5L2|A0A0A0L5L2_CUCSA6.6e-5697.30Nucleoside diphosphate kinase OS=Cucumis sativus OX=3659 GN=Csa_3G116710 PE=3 SV... [more]
tr|A0A1U8N814|A0A1U8N814_GOSHI2.7e-4984.68Nucleoside diphosphate kinase OS=Gossypium hirsutum OX=3635 GN=LOC107945569 PE=3... [more]
tr|A0A1U8M838|A0A1U8M838_GOSHI2.7e-4984.68Nucleoside diphosphate kinase OS=Gossypium hirsutum OX=3635 GN=LOC107934002 PE=3... [more]
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
TermDefinition
GO:0006241CTP biosynthetic process
GO:0006228UTP biosynthetic process
GO:0006183GTP biosynthetic process
GO:0006165nucleoside diphosphate phosphorylation
Vocabulary: Molecular Function
TermDefinition
GO:0004550nucleoside diphosphate kinase activity
Vocabulary: INTERPRO
TermDefinition
IPR023005Nucleoside_diP_kinase_AS
IPR036850NDK-like_dom_sf
IPR034907NDK-like_dom
IPR001564Nucleoside_diP_kinase
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006241 CTP biosynthetic process
biological_process GO:0006183 GTP biosynthetic process
biological_process GO:0006165 nucleoside diphosphate phosphorylation
biological_process GO:0006228 UTP biosynthetic process
biological_process GO:0006144 purine nucleobase metabolic process
biological_process GO:0006206 pyrimidine nucleobase metabolic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0004550 nucleoside diphosphate kinase activity
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Carg25065Carg25065gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg25065-RA.CDS.2Carg25065-RA.CDS.2CDS
Carg25065-RA.CDS.1Carg25065-RA.CDS.1CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg25065-RA.exon.2Carg25065-RA.exon.2exon
Carg25065-RA.exon.1Carg25065-RA.exon.1exon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Carg25065-RACarg25065-RA-proteinpolypeptide


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001564Nucleoside diphosphate kinasePRINTSPR01243NUCDPKINASEcoord: 11..30
score: 53.63
coord: 52..68
score: 66.13
coord: 31..48
score: 67.65
coord: 75..94
score: 75.48
IPR034907Nucleoside diphosphate kinase-like domainSMARTSM00562ndk_5coord: 1..101
e-value: 1.5E-39
score: 147.4
IPR034907Nucleoside diphosphate kinase-like domainPFAMPF00334NDKcoord: 2..96
e-value: 2.9E-36
score: 124.3
IPR036850Nucleoside diphosphate kinase-like domain superfamilyGENE3DG3DSA:3.30.70.141coord: 1..111
e-value: 8.5E-46
score: 157.3
IPR036850Nucleoside diphosphate kinase-like domain superfamilySUPERFAMILYSSF54919Nucleoside diphosphate kinase, NDKcoord: 2..110
NoneNo IPR availablePANTHERPTHR11349NUCLEOSIDE DIPHOSPHATE KINASEcoord: 1..111
NoneNo IPR availablePANTHERPTHR11349:SF66SUBFAMILY NOT NAMEDcoord: 1..111
NoneNo IPR availableCDDcd04413NDPk_Icoord: 1..94
e-value: 1.08098E-59
score: 180.742
IPR023005Nucleoside diphosphate kinase, active sitePROSITEPS00469NDP_KINASEScoord: 75..83