Carg25030-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg25030-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Heavy metal-associated domain containing protein
Location	Cucurbita_argyrosperma_scaffold_176 : 251932 .. 253503 (-)
Sequence length	1114

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CATATCTGTTGATCAATACTTCTCTCTCTGCTCCATTCTTGAGCTGCTAATGGCAAAACCAGAAGCTAAAGACTTCGAAGCGACCTCAGAACCCTTCAACTCTAAGGTAAAATGTTCTTGAATTGTTCTTCATTTTCAAATCTTTCTTATTTTCTGCTAAAATTTTGCAGACATGTTTGTTGCGAGTCTCCATTCACTGTGAAGGTTGCAAGAGGAAAGTGATCAAGATTCTCCATAATATTCATGGTACTGTTCTTCATTTTTTCTTCATTTCTTTACATTTTGATCGCTTTGTTTTACTCAAATCCTAATTTCCTCTGTTTTTCCTTCACTTTCTTAGATTTTGATCGTTTATTTTGTTAAAAATTCAAAATTCCTCATCTGGGTATGCCTTATTTTCCCTCTAACATGAATTTCTTTCATCAAATTCTTCATTTCTTCACATTTCTTTCCCTTCCTCAAAATTTGTTCATTGTTTTCTCTTAAAAAATCGAAAATTTCCATTGTTGATCATCTGGGTGTTCTTCAATCTCCACAATTACAGGAGTTCACGGAGTAGAAATCGATCGAAAGCAGCAGAAAGTCACAGTAACAACGAATATAGACGAACAAACATTGATTAAAAGGTTAATCAAGGCAGGAAAGCACGCAGAACCATGGCCAGAAAGAATACCCATCTCAAAAAACATCAAAGAAAAGCAAATCGCTATGGAAATCCCTGTCTTTGTAACCAGCGCCGCCGTGCACGACGGCGGAATGCAGAAACAGAGCACGGAAACAGAGGCTCCGGCGAAAGAAGTGCCAGTCCCATCAAAAAATGAGGAGAACTGTGGAATTAGTGGAGCTGCCCAGATACTTGAAATTAGTAATGATGGAGACGGAGCTGCGGCGAAGATTGGCCGCGCCACCGTAGAACGAGTGGTGGAGTTTACGTCGGGAGGAGGTGGTGATAAGAATATCGCCGGTGAGACTCAACCTGGTGGGGCAGGTGGCAGTGCGGTAGCTGTCGAGGCAAGCAGCGGTGGCGGTGGAGAAGGGAGGAAGAAGAAGAGGAAAGGGCAGAAGAAAGAGAAGAGTGGCGGAGGAGGAGGAGGAGGCGGCGGCGCTGTTGTCGGAGATGTGGAGGGTCCACAGGTAGTTCCTCCACCTGGCAGCATAGGATCAGCCACTCCTCATGATCATCACCATCCTCATGATCCAACTCCATCATCCAATCACGCCCCTCCATTTAACCAACCATACTACCCGATCTCACCTCAACCGACCCACATGGCAAGTTATAACATGATCTCATCTCAACAGACTCACGTGGCAAGTTATAACACAATCTCATCCCAACCAACTCACATGACGAGTTACAATACAACGCACCCAACTACTACCTATGGTCCTTACTACGTCGAGCCACTGCCATATTCATATGTACATTCAGTTGCAGTAAGAAACACTTCACTACCATCACCACCATCACCACCACAACCACAACCATTGACAGAACTATCAAACTCTCCAACGTCTAATCCATTCGACTTCTTTAGCGATGAGAATCCCAGTGGTTGCACGGTCATGTGA

mRNA sequence

CATATCTGTTGATCAATACTTCTCTCTCTGCTCCATTCTTGAGCTGCTAATGGCAAAACCAGAAGCTAAAGACTTCGAAGCGACCTCAGAACCCTTCAACTCTAAGACATGTTTGTTGCGAGTCTCCATTCACTGTGAAGGTTGCAAGAGGAAAGTGATCAAGATTCTCCATAATATTCATGGAAAGCACGCAGAACCATGGCCAGAAAGAATACCCATCTCAAAAAACATCAAAGAAAAGCAAATCGCTATGGAAATCCCTGTCTTTGTAACCAGCGCCGCCGTGCACGACGGCGGAATGCAGAAACAGAGCACGGAAACAGAGGCTCCGGCGAAAGAAGTGCCAGTCCCATCAAAAAATGAGGAGAACTGTGGAATTAGTGGAGCTGCCCAGATACTTGAAATTAGTAATGATGGAGACGGAGCTGCGGCGAAGATTGGCCGCGCCACCGTAGAACGAGTGGTGGAGTTTACGTCGGGAGGAGGTGGTGATAAGAATATCGCCGGTGAGACTCAACCTGGTGGGGCAGGTGGCAGTGCGGTAGCTGTCGAGGCAAGCAGCGGTGGCGGTGGAGAAGGGAGGAAGAAGAAGAGGAAAGGGCAGAAGAAAGAGAAGAGTGGCGGAGGAGGAGGAGGAGGCGGCGGCGCTGTTGTCGGAGATGTGGAGGGTCCACAGGTAGTTCCTCCACCTGGCAGCATAGGATCAGCCACTCCTCATGATCATCACCATCCTCATGATCCAACTCCATCATCCAATCACGCCCCTCCATTTAACCAACCATACTACCCGATCTCACCTCAACCGACCCACATGGCAAGTTATAACATGATCTCATCTCAACAGACTCACGTGGCAAGTTATAACACAATCTCATCCCAACCAACTCACATGACGAGTTACAATACAACGCACCCAACTACTACCTATGGTCCTTACTACGTCGAGCCACTGCCATATTCATATGTACATTCAGTTGCAGTAAGAAACACTTCACTACCATCACCACCATCACCACCACAACCACAACCATTGACAGAACTATCAAACTCTCCAACGTCTAATCCATTCGACTTCTTTAGCGATGAGAATCCCAGTGGTTGCACGGTCATGTGA

Coding sequence (CDS)

ATGGCAAAACCAGAAGCTAAAGACTTCGAAGCGACCTCAGAACCCTTCAACTCTAAGACATGTTTGTTGCGAGTCTCCATTCACTGTGAAGGTTGCAAGAGGAAAGTGATCAAGATTCTCCATAATATTCATGGAAAGCACGCAGAACCATGGCCAGAAAGAATACCCATCTCAAAAAACATCAAAGAAAAGCAAATCGCTATGGAAATCCCTGTCTTTGTAACCAGCGCCGCCGTGCACGACGGCGGAATGCAGAAACAGAGCACGGAAACAGAGGCTCCGGCGAAAGAAGTGCCAGTCCCATCAAAAAATGAGGAGAACTGTGGAATTAGTGGAGCTGCCCAGATACTTGAAATTAGTAATGATGGAGACGGAGCTGCGGCGAAGATTGGCCGCGCCACCGTAGAACGAGTGGTGGAGTTTACGTCGGGAGGAGGTGGTGATAAGAATATCGCCGGTGAGACTCAACCTGGTGGGGCAGGTGGCAGTGCGGTAGCTGTCGAGGCAAGCAGCGGTGGCGGTGGAGAAGGGAGGAAGAAGAAGAGGAAAGGGCAGAAGAAAGAGAAGAGTGGCGGAGGAGGAGGAGGAGGCGGCGGCGCTGTTGTCGGAGATGTGGAGGGTCCACAGGTAGTTCCTCCACCTGGCAGCATAGGATCAGCCACTCCTCATGATCATCACCATCCTCATGATCCAACTCCATCATCCAATCACGCCCCTCCATTTAACCAACCATACTACCCGATCTCACCTCAACCGACCCACATGGCAAGTTATAACATGATCTCATCTCAACAGACTCACGTGGCAAGTTATAACACAATCTCATCCCAACCAACTCACATGACGAGTTACAATACAACGCACCCAACTACTACCTATGGTCCTTACTACGTCGAGCCACTGCCATATTCATATGTACATTCAGTTGCAGTAAGAAACACTTCACTACCATCACCACCATCACCACCACAACCACAACCATTGACAGAACTATCAAACTCTCCAACGTCTAATCCATTCGACTTCTTTAGCGATGAGAATCCCAGTGGTTGCACGGTCATGTGA

Protein sequence

MAKPEAKDFEATSEPFNSKTCLLRVSIHCEGCKRKVIKILHNIHGKHAEPWPERIPISKNIKEKQIAMEIPVFVTSAAVHDGGMQKQSTETEAPAKEVPVPSKNEENCGISGAAQILEISNDGDGAAAKIGRATVERVVEFTSGGGGDKNIAGETQPGGAGGSAVAVEASSGGGGEGRKKKRKGQKKEKSGGGGGGGGGAVVGDVEGPQVVPPPGSIGSATPHDHHHPHDPTPSSNHAPPFNQPYYPISPQPTHMASYNMISSQQTHVASYNTISSQPTHMTSYNTTHPTTTYGPYYVEPLPYSYVHSVAVRNTSLPSPPSPPQPQPLTELSNSPTSNPFDFFSDENPSGCTVM

Homology

[Close]

BLAST of Carg25030-RA vs. NCBI nr
Match: XP_022934018.1 (heavy metal-associated isoprenylated plant protein 36-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 324.7 bits (831), Expect = 3.9e-85
Identity = 315/390 (80.77%), Postives = 317/390 (81.28%), Query Frame = 0


Query: 1   MAKPEAKDFEATSEPFNSKTCLLRVSIHCEGCKRKVI---------------------KI 60
           MAKPEAKDFEATSEPFNSKTCLLRVSIHCEGCKRKVI                      +
Sbjct: 1   MAKPEAKDFEATSEPFNSKTCLLRVSIHCEGCKRKVIXXXXXXXXXXXXXIDRKQQKVTV 60

Query: 61  LHNIH-----------GKHAEPWPERIPISKNIKEKQIAMEIPVFVTSAAVHDGGMQKQS 120
             NI            GKHAEPWPERIPISKNIKEKQIAMEIPVFVTSAAVHDGGMQKQS
Sbjct: 61  TTNIDEQTLIKRLIKAGKHAEPWPERIPISKNIKEKQIAMEIPVFVTSAAVHDGGMQKQS 120

Query: 121 TETEAPAKEVPVPSKNEENCGISGAAQILEISNDGDGAAAKIGRATVERVVEFTSXXXXX 180
           TETEAPAKEVPVPSKNEENCGISGAAQILEISNDGDGAAAKIGRATVERVVEFTS  XXX
Sbjct: 121 TETEAPAKEVPVPSKNEENCGISGAAQILEISNDGDGAAAKIGRATVERVVEFTS--XXX 180

Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    
Sbjct: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVECP 240

Query: 241 XXXXXXXSIGSATPHDXXXPHDPTPSSNHAPPFNQPYY----PISPQXXXXXXXXXXXXX 300
                  S+GSATP  XXX    TPSSNHAPPFNQPYY     IS Q     XXXXXXXX
Sbjct: 241 QVVPPPGSLGSATPXXXXXXXXXTPSSNHAPPFNQPYYHPVHTISSQPTHIAXXXXXXXX 300

Query: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYYVEPLPYSYVHSVAVRNTSLPXXXXXXX 355
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYYVEPLPYSYVHSVAVRNTSLP  XXXXX
Sbjct: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYYVEPLPYSYVHSVAVRNTSLP--XXXXX 360

[Close]

BLAST of Carg25030-RA vs. NCBI nr
Match: XP_022934017.1 (heavy metal-associated isoprenylated plant protein 36-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 315.5 bits (807), Expect = 2.4e-82
Identity = 320/403 (79.40%), Postives = 322/403 (79.90%), Query Frame = 0


Query: 1   MAKPEAKDFEATSEPFNSKTCLLRVSIHCEGCKRKVI---------------------KI 60
           MAKPEAKDFEATSEPFNSKTCLLRVSIHCEGCKRKVI                      +
Sbjct: 1   MAKPEAKDFEATSEPFNSKTCLLRVSIHCEGCKRKVIXXXXXXXXXXXXXIDRKQQKVTV 60

Query: 61  LHNIH-----------GKHAEPWPERIPISKNIKEKQIAMEIPVFVTSAAVHDGGMQKQS 120
             NI            GKHAEPWPERIPISKNIKEKQIAMEIPVFVTSAAVHDGGMQKQS
Sbjct: 61  TTNIDEQTLIKRLIKAGKHAEPWPERIPISKNIKEKQIAMEIPVFVTSAAVHDGGMQKQS 120

Query: 121 TETEAPAKEVPVPSKNEENCGISGAAQILEISNDGDGAAAKIGRATVERVVEFTSXXXXX 180
           TETEAPAKEVPVPSKNEENCGISGAAQILEISNDGDGAAAKIGRATVERVVEFTS  XXX
Sbjct: 121 TETEAPAKEVPVPSKNEENCGISGAAQILEISNDGDGAAAKIGRATVERVVEFTS--XXX 180

Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    
Sbjct: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVECP 240

Query: 241 XXXXXXXSIGSATPHDXXXPHDPTPSSNHAPPFNQPYY----PISPQ------------- 300
                  S+GSATP  XXX    TPSSNHAPPFNQPYY     IS Q             
Sbjct: 241 QVVPPPGSLGSATPXXXXXXXXXTPSSNHAPPFNQPYYHPVHTISSQPTHIAXXXXXXXX 300

Query: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYYVEPLPYSYVHSVAV 355
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYYVEPLPYSYVHSVAV
Sbjct: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYYVEPLPYSYVHSVAV 360

[Close]

BLAST of Carg25030-RA vs. NCBI nr
Match: XP_022969697.1 (heavy metal-associated isoprenylated plant protein 36-like isoform X3 [Cucurbita maxima])

HSP 1 Score: 276.9 bits (707), Expect = 9.3e-71
Identity = 290/390 (74.36%), Postives = 291/390 (74.62%), Query Frame = 0


Query: 1   MAKPEAKDFEATSEPFNSKTCLLRVSIHCEGCKRKVIKILHNIH---------------- 60
           MAKPEAKDFE TSEPFNSKTCLLRVSIHCEGCKRKVIKILHNI                 
Sbjct: 1   MAKPEAKDFEGTSEPFNSKTCLLRVSIHCEGCKRKVIKILHNIXXXXAVEIDRNQQKVTV 60

Query: 61  ----------------GKHAEPWPERIPISKNIKEKQIAMEIPVFVTSAAVHDGGMQKQS 120
                           GKHAEPWPERIPISKNIKEKQ AMEIPV V SAAVHDGG QKQS
Sbjct: 61  TTNIDEQTLIKRLIKAGKHAEPWPERIPISKNIKEKQNAMEIPVSVNSAAVHDGGKQKQS 120

Query: 121 TETEAPAKEVPVPSKNEENCGISGAAQILEISNDGDGAAAKIGRATVERVVEFTSXXXXX 180
           TETEAPAKEVPVPSKNEENCGISGAAQILEISNDGDGAAAKIGRATVERVVEFTS     
Sbjct: 121 TETEAPAKEVPVPSKNEENCGISGAAQILEISNDGDGAAAKIGRATVERVVEFTS--GGS 180

Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240
                      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 181 GDKNIAGETQPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240

Query: 241 XXXXXXXSIGSATPHDXXXPHDPTPSSNHAPPFNQPY----YPISPQXXXXXXXXXXXXX 300
           XXXXXXX         XXX          APPFNQPY    + IS Q XXXXXXXXXXXX
Sbjct: 241 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPPFNQPYNHSVHTISSQPXXXXXXXXXXXX 300

Query: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYYVEPLPYSYVHSVAVRNTSLPXXXXXXX 355
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  VEPLPY    SV VRNTS P       
Sbjct: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVEPLPY----SVVVRNTSPP---SPPQ 360

[Close]

BLAST of Carg25030-RA vs. NCBI nr
Match: XP_022969689.1 (heavy metal-associated isoprenylated plant protein 36-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 276.9 bits (707), Expect = 9.3e-71
Identity = 290/390 (74.36%), Postives = 291/390 (74.62%), Query Frame = 0


Query: 1   MAKPEAKDFEATSEPFNSKTCLLRVSIHCEGCKRKVIKILHNIH---------------- 60
           MAKPEAKDFE TSEPFNSKTCLLRVSIHCEGCKRKVIKILHNI                 
Sbjct: 1   MAKPEAKDFEGTSEPFNSKTCLLRVSIHCEGCKRKVIKILHNIXXXXAVEIDRNQQKVTV 60

Query: 61  ----------------GKHAEPWPERIPISKNIKEKQIAMEIPVFVTSAAVHDGGMQKQS 120
                           GKHAEPWPERIPISKNIKEKQ AMEIPV V SAAVHDGG QKQS
Sbjct: 61  TTNIDEQTLIKRLIKAGKHAEPWPERIPISKNIKEKQNAMEIPVSVNSAAVHDGGKQKQS 120

Query: 121 TETEAPAKEVPVPSKNEENCGISGAAQILEISNDGDGAAAKIGRATVERVVEFTSXXXXX 180
           TETEAPAKEVPVPSKNEENCGISGAAQILEISNDGDGAAAKIGRATVERVVEFTS     
Sbjct: 121 TETEAPAKEVPVPSKNEENCGISGAAQILEISNDGDGAAAKIGRATVERVVEFTS--GGS 180

Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240
                      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 181 GDKNIAGETQPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240

Query: 241 XXXXXXXSIGSATPHDXXXPHDPTPSSNHAPPFNQPY----YPISPQXXXXXXXXXXXXX 300
           XXXXXXX         XXX          APPFNQPY    + IS Q XXXXXXXXXXXX
Sbjct: 241 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPPFNQPYNHSVHTISSQPXXXXXXXXXXXX 300

Query: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYYVEPLPYSYVHSVAVRNTSLPXXXXXXX 355
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  VEPLPY    SV VRNTS P       
Sbjct: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVEPLPY----SVVVRNTSPP---SPPQ 360

[Close]

BLAST of Carg25030-RA vs. NCBI nr
Match: XP_022969682.1 (heavy metal-associated isoprenylated plant protein 36-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 267.7 bits (683), Expect = 5.6e-68
Identity = 291/403 (72.21%), Postives = 292/403 (72.46%), Query Frame = 0


Query: 1   MAKPEAKDFEATSEPFNSKTCLLRVSIHCEGCKRKVIKILHNIH---------------- 60
           MAKPEAKDFE TSEPFNSKTCLLRVSIHCEGCKRKVIKILHNI                 
Sbjct: 1   MAKPEAKDFEGTSEPFNSKTCLLRVSIHCEGCKRKVIKILHNIXXXXAVEIDRNQQKVTV 60

Query: 61  ----------------GKHAEPWPERIPISKNIKEKQIAMEIPVFVTSAAVHDGGMQKQS 120
                           GKHAEPWPERIPISKNIKEKQ AMEIPV V SAAVHDGG QKQS
Sbjct: 61  TTNIDEQTLIKRLIKAGKHAEPWPERIPISKNIKEKQNAMEIPVSVNSAAVHDGGKQKQS 120

Query: 121 TETEAPAKEVPVPSKNEENCGISGAAQILEISNDGDGAAAKIGRATVERVVEFTSXXXXX 180
           TETEAPAKEVPVPSKNEENCGISGAAQILEISNDGDGAAAKIGRATVERVVEFTS     
Sbjct: 121 TETEAPAKEVPVPSKNEENCGISGAAQILEISNDGDGAAAKIGRATVERVVEFTS--GGS 180

Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240
                      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 181 GDKNIAGETQPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240

Query: 241 XXXXXXXSIGSATPHDXXXPHDPTPSSNHAPPFNQPY----YPISPQ------------- 300
           XXXXXXX         XXX          APPFNQPY    + IS Q             
Sbjct: 241 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPPFNQPYNHSVHTISSQPXXXXXXXXXXXX 300

Query: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYYVEPLPYSYVHSVAV 355
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  VEPLPY    SV V
Sbjct: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVEPLPY----SVVV 360

[Close]

BLAST of Carg25030-RA vs. TAIR10
Match: AT5G27690.1 (Heavy metal transport/detoxification superfamily protein )

HSP 1 Score: 48.5 bits (114), Expect = 9.7e-06
Identity = 23/37 (62.16%), Postives = 25/37 (67.57%), Query Frame = 0


Query: 9  FEATSEPFNSKTCLLRVSIHCEGCKRKVIKILHNIHG 46
          FE   EP    T +LRVSIHCEGCKRK+ KIL  I G
Sbjct: 20 FEDYPEPLRYTTWVLRVSIHCEGCKRKIKKILSKIDG 56

[Close]

BLAST of Carg25030-RA vs. TAIR10
Match: AT1G56210.1 (Heavy metal transport/detoxification superfamily protein )

HSP 1 Score: 47.4 bits (111), Expect = 2.2e-05
Identity = 21/31 (67.74%), Postives = 24/31 (77.42%), Query Frame = 0


Query: 15 PFNSKTCLLRVSIHCEGCKRKVIKILHNIHG 46
          P   K+C L+VSIHCEGCKRKV KIL +I G
Sbjct: 36 PLPYKSCTLKVSIHCEGCKRKVKKILTSIEG 66

[Close]

BLAST of Carg25030-RA vs. TAIR10
Match: AT3G06130.1 (Heavy metal transport/detoxification superfamily protein )

HSP 1 Score: 43.1 bits (100), Expect = 4.1e-04
Identity = 17/27 (62.96%), Postives = 23/27 (85.19%), Query Frame = 0


Query: 19 KTCLLRVSIHCEGCKRKVIKILHNIHG 46
          +TC+L+V+IHC+GCK+KV KIL  I G
Sbjct: 10 QTCVLKVNIHCDGCKQKVKKILQKIEG 36

[Close]

BLAST of Carg25030-RA vs. TAIR10
Match: AT5G19090.1 (Heavy metal transport/detoxification superfamily protein )

HSP 1 Score: 43.1 bits (100), Expect = 4.1e-04
Identity = 17/27 (62.96%), Postives = 23/27 (85.19%), Query Frame = 0


Query: 19 KTCLLRVSIHCEGCKRKVIKILHNIHG 46
          +TC+L+V+IHC+GCK+KV KIL  I G
Sbjct: 10 QTCVLKVNIHCDGCKQKVKKILQKIEG 36

[Close]

BLAST of Carg25030-RA vs. TAIR10
Match: AT3G05220.1 (Heavy metal transport/detoxification superfamily protein )

HSP 1 Score: 42.0 bits (97), Expect = 9.1e-04
Identity = 20/46 (43.48%), Postives = 30/46 (65.22%), Query Frame = 0


Query: 19 KTCLLRVSIHCEGCKRKVIKILHNIHGKH---AEPWPERIPISKNI 62
          +TC+L+V++HCEGCK KV K L  I G +   A+    R+ ++ NI
Sbjct: 10 QTCVLKVNVHCEGCKHKVKKQLQKIEGVYSVKADVEQGRVTVTGNI 55

[Close]

BLAST of Carg25030-RA vs. Swiss-Prot
Match: sp|Q84J88|HIP36_ARATH (Heavy metal-associated isoprenylated plant protein 36 OS=Arabidopsis thaliana OX=3702 GN=HIPP36 PE=2 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 1.8e-04
Identity = 23/37 (62.16%), Postives = 25/37 (67.57%), Query Frame = 0


Query: 9  FEATSEPFNSKTCLLRVSIHCEGCKRKVIKILHNIHG 46
          FE   EP    T +LRVSIHCEGCKRK+ KIL  I G
Sbjct: 20 FEDYPEPLRYTTWVLRVSIHCEGCKRKIKKILSKIDG 56

[Close]

BLAST of Carg25030-RA vs. Swiss-Prot
Match: sp|Q9C7J6|HIP35_ARATH (Heavy metal-associated isoprenylated plant protein 35 OS=Arabidopsis thaliana OX=3702 GN=HIPP35 PE=2 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 3.9e-04
Identity = 21/31 (67.74%), Postives = 24/31 (77.42%), Query Frame = 0


Query: 15 PFNSKTCLLRVSIHCEGCKRKVIKILHNIHG 46
          P   K+C L+VSIHCEGCKRKV KIL +I G
Sbjct: 36 PLPYKSCTLKVSIHCEGCKRKVKKILTSIEG 66

[Close]

BLAST of Carg25030-RA vs. TrEMBL
Match: tr|A0A0A0LZ09|A0A0A0LZ09_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G569440 PE=4 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 2.6e-37
Identity = 164/404 (40.59%), Postives = 190/404 (47.03%), Query Frame = 0


Query: 1   MAKPEAKDFEATSEPFNSKTCLLRVSIHCEGCKRKVIKILHNIH---------------- 60
           MAK EAK+FE T EPF  K C+LRVSIHCEGCKRKV+KILHNI+                
Sbjct: 1   MAKVEAKEFEGTLEPFKCKICVLRVSIHCEGCKRKVVKILHNINGVHSVEIDRKQQKVTI 60

Query: 61  ----------------GKHAEPWPERIPISKNIKEKQIAMEIPVFVTSAAVHDGGMQKQS 120
                           G HAEPWPE  PISK IKEKQI +EIP   TSA+V DGG +KQ+
Sbjct: 61  TTNIDEQSLIKRLIKAGMHAEPWPETKPISKIIKEKQIPVEIPPGETSASVRDGGKKKQT 120

Query: 121 TETEAPAKEVPVPSKNEENCGISGAAQILEISNDGDGAAAKIGRATVERVVEFTSXXXXX 180
           TETE PA+E+ VP +NEE    SG  + +   +DG G A + G   VERVVE        
Sbjct: 121 TETEPPAEELQVPPRNEEK---SGTNENVRRCDDGHGDATETG-GPVERVVE-------- 180

Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240
                                    XXXXXXXXXXXXXXXXXXXXXXXXXX         
Sbjct: 181 -SPPNISSETQPGMPSGAVDIEASCXXXXXXXXXXXXXXXXXXXXXXXXXXAVAGEMVSP 240

Query: 241 XXXXXXXSIGSATPHDXXXPHDPTPSSNHAPPFNQPYYPISPQXXXXXXXXXXXXXXXXX 300
                  +IGS T      P +  PSSNH+PPFN P +    Q                 
Sbjct: 241 QTVPTPTNIGSPT------PPNQIPSSNHSPPFNHPLHTTLSQ----------------- 300

Query: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXYYVEPLPYS--YVHSVA-VRNTSLP-------- 355
                                      YY  P  YS  YVHS+A   ++SLP        
Sbjct: 301 ---------PAYIASYNTAYPTNTHDAYYASPPSYSYAYVHSMAPTLSSSLPIMEQPXXX 359

[Close]

BLAST of Carg25030-RA vs. TrEMBL
Match: tr|A0A1S3BPP2|A0A1S3BPP2_CUCME (uncharacterized protein LOC103492164 OS=Cucumis melo OX=3656 GN=LOC103492164 PE=4 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 2.9e-36
Identity = 179/413 (43.34%), Postives = 202/413 (48.91%), Query Frame = 0


Query: 1   MAKPEAKDFEATSEPFNSKTCLLRVSIHCEGCKRKVIKILHNIH---------------- 60
           MAK EAK+ E TSEPF  K C+LRVSIHCEGCKRKVIKILHNI+                
Sbjct: 1   MAKVEAKELEGTSEPFKCKICVLRVSIHCEGCKRKVIKILHNINGVHSVEIDRKQQKVTI 60

Query: 61  ----------------GKHAEPWPERIPISKNIKEKQIAMEIPVFVTSAAVHDGGMQKQS 120
                           GKHAEPWPE  PISK   EKQIA+EIP   TSA+V DGG QKQS
Sbjct: 61  TTNIDEQSLIKRLIKAGKHAEPWPETKPISK--IEKQIAVEIPAGETSASVRDGGKQKQS 120

Query: 121 TETEAPAKEVPVPSKNEENCGISGAAQILEIS--NDGDGAAAKIGRATVERVVEFTSXXX 180
           TETE  A+ + VP +NEE  G +   Q+L+IS  +DG G A +     VERVVE      
Sbjct: 121 TETEPSAEALQVPPRNEEKSGTNENVQVLQISKADDGHGDATET-NGRVERVVESPPDIA 180

Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240
                         XXXXXXXXXXXXXXXXXXXXXXXXXXXX                  
Sbjct: 181 CETQPSMPSGAVDIXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVAGEMVSPPTV------ 240

Query: 241 XXXXXXXXXSIGSATPHDXXXPHDP--TPSSNHAPPFNQPY-YPISPQXXXXXXXXXXXX 300
                         TP +   P+ P   PSSNH+PPFN PY +P+               
Sbjct: 241 -------------PTPANIGSPNPPNQVPSSNHSPPFNNPYNHPL--------------- 300

Query: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYYVEPLPYS--YVHSVAVRN-----TSL 355
                                           YY  P  YS  YVHS+A RN     +SL
Sbjct: 301 --------HVAASQPAYVASYNTVYPTNTHDAYYASPPSYSYAYVHSMAPRNSTTLSSSL 360

[Close]

BLAST of Carg25030-RA vs. TrEMBL
Match: tr|A0A2I0J5K6|A0A2I0J5K6_PUNGR (Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_028067 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.3e-07
Identity = 31/47 (65.96%), Postives = 35/47 (74.47%), Query Frame = 0


Query: 3  KPEAKDFEATSEPFNSKTCLLRVSIHCEGCKRKVIKILHNIHGKHAE 50
          KPEAKD E + EP N KT +L+VSIHCE CK+KV KILH I G  AE
Sbjct: 8  KPEAKDTEESPEPLNQKTWVLKVSIHCEACKKKVNKILHKIEGGEAE 54

[Close]

BLAST of Carg25030-RA vs. TrEMBL
Match: tr|A0A218VQW8|A0A218VQW8_PUNGR (Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr020221 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 2.1e-07
Identity = 31/67 (46.27%), Postives = 45/67 (67.16%), Query Frame = 0


Query: 3  KPEAKDFEATSEPFNSKTCLLRVSIHCEGCKRKVIKILHNIHGKHAEPW---PERIPISK 62
          KPEAKD E + EP N KT +L+VSIHCE CK+KV KILH I G +   +    +R+ ++ 
Sbjct: 8  KPEAKDTEESPEPLNQKTWVLKVSIHCEACKKKVNKILHKIEGVYRTDFDLKQQRVTVTG 67

Query: 63 NIKEKQI 67
          N++ + +
Sbjct: 68 NVEAETL 74

[Close]

BLAST of Carg25030-RA vs. TrEMBL
Match: tr|A0A2G5DLU3|A0A2G5DLU3_AQUCA (Uncharacterized protein OS=Aquilegia coerulea OX=218851 GN=AQUCO_01700211v1 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 5.3e-06
Identity = 31/64 (48.44%), Postives = 38/64 (59.38%), Query Frame = 0


Query: 1  MAKPEAKDFEATSEPFNSKTCLLRVSIHCEGCKRKVIKILHNIH----------GKHAEP 55
          MA   +K  E  + P   +T +L+VSIHCEGCKRKV K+L NI           GKHAE 
Sbjct: 1  MASTPSKQVEEATGPLEYQTWVLKVSIHCEGCKRKVKKVLQNIEETLIKKLMKTGKHAEL 60

The following BLAST results are available for this feature:

BLAST of Carg25030-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022934018.1	3.9e-85	80.77	heavy metal-associated isoprenylated plant protein 36-like isoform X2 [Cucurbita...	[more]
XP_022934017.1	2.4e-82	79.40	heavy metal-associated isoprenylated plant protein 36-like isoform X1 [Cucurbita...	[more]
XP_022969697.1	9.3e-71	74.36	heavy metal-associated isoprenylated plant protein 36-like isoform X3 [Cucurbita...	[more]
XP_022969689.1	9.3e-71	74.36	heavy metal-associated isoprenylated plant protein 36-like isoform X2 [Cucurbita...	[more]
XP_022969682.1	5.6e-68	72.21	heavy metal-associated isoprenylated plant protein 36-like isoform X1 [Cucurbita...	[more]

BLAST of Carg25030-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT5G27690.1	9.7e-06	62.16	Heavy metal transport/detoxification superfamily protein	[more]
AT1G56210.1	2.2e-05	67.74	Heavy metal transport/detoxification superfamily protein	[more]
AT3G06130.1	4.1e-04	62.96	Heavy metal transport/detoxification superfamily protein	[more]
AT5G19090.1	4.1e-04	62.96	Heavy metal transport/detoxification superfamily protein	[more]
AT3G05220.1	9.1e-04	43.48	Heavy metal transport/detoxification superfamily protein	[more]

BLAST of Carg25030-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q84J88\|HIP36_ARATH	1.8e-04	62.16	Heavy metal-associated isoprenylated plant protein 36 OS=Arabidopsis thaliana OX...	[more]
sp\|Q9C7J6\|HIP35_ARATH	3.9e-04	67.74	Heavy metal-associated isoprenylated plant protein 35 OS=Arabidopsis thaliana OX...	[more]

BLAST of Carg25030-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LZ09\|A0A0A0LZ09_CUCSA	2.6e-37	40.59	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G569440 PE=4 SV=1	[more]
tr\|A0A1S3BPP2\|A0A1S3BPP2_CUCME	2.9e-36	43.34	uncharacterized protein LOC103492164 OS=Cucumis melo OX=3656 GN=LOC103492164 PE=...	[more]
tr\|A0A2I0J5K6\|A0A2I0J5K6_PUNGR	1.3e-07	65.96	Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_028067 PE=4 SV=1	[more]
tr\|A0A218VQW8\|A0A218VQW8_PUNGR	2.1e-07	46.27	Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr020221 PE=4 SV=1	[more]
tr\|A0A2G5DLU3\|A0A2G5DLU3_AQUCA	5.3e-06	48.44	Uncharacterized protein OS=Aquilegia coerulea OX=218851 GN=AQUCO_01700211v1 PE=4...	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg25030	Carg25030	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg25030-RA	Carg25030-RA-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg25030-RA.CDS.3	Carg25030-RA.CDS.3	CDS
Carg25030-RA.CDS.2	Carg25030-RA.CDS.2	CDS
Carg25030-RA.CDS.1	Carg25030-RA.CDS.1	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg25030-RA.five_prime_UTR.1	Carg25030-RA.five_prime_UTR.1	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg25030-RA.exon.3	Carg25030-RA.exon.3	exon
Carg25030-RA.exon.2	Carg25030-RA.exon.2	exon
Carg25030-RA.exon.1	Carg25030-RA.exon.1	exon

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 314..354
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 330..354
None	No IPR available	PANTHER	PTHR22814	COPPER TRANSPORT PROTEIN ATOX1-RELATED	coord: 5..45
None	No IPR available	PANTHER	PTHR22814	COPPER TRANSPORT PROTEIN ATOX1-RELATED	coord: 45..354
None	No IPR available	PANTHER	PTHR22814:SF180	HEAVY METAL TRANSPORT/DETOXIFICATION DOMAIN-CONTAINING PROTEIN	coord: 45..354 coord: 5..45