Carg25016-RA (mRNA) Silver-seed gourd

Overview
NameCarg25016-RA
TypemRNA
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionUnknown protein
LocationCucurbita_argyrosperma_scaffold_176 : 95767 .. 97719 (-)
Sequence length246
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAAGGAAACGATCATTATGTTTACCACAATGCTGCCATGGTGGTTGCTATTCCTAACGGGTATCCAACATCAACAACTACTAGAGAATGCTCGTCCGACCAGAAATGGGTCATGGAGGTGTGCGAACCGACTGGTGGGTCCATGCTCGCACGTGTGGACTGTGGATAGAAAATTGAGTACACATCCAATTGTTCGCTTAAGATAGCAGCGGTAGAAAAAAAAAAAACCAATAGTGGGGTTAGTTAGTGAGTATTTCTTAAAATATTCAAGCCACGTGATACTTTTATTCCAGGTAAATGCAAGACATTCCTGTAGGGTGACAAAGACATCGCAACTCGAGATCATGACACATGCATACGTCAATTGTATTTATTTTCTTAGATTTGGGCTAGAATAGGATGTTTTAAATTTAAATGTTTATTTATTTCATTTAGTATTTTGTTGTGTCGTTTTAAAGATGTTTTTGAACACATAAGTCCACGACAGTGTTTTAAGATGAAGTTTAAAGGCTAACTTTTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACGTTATGATAATGGTAGCGACTCTTGGTAAGTAGAAATCTAGGTTCGTTACAAACCGACGATTAGAGGACGATTGACGTGCCGTGAGCTGGGAATGTGAATTTGAGTCATATTAAAAAGAATCTCATAGAGATTCAAGATTCACTCGAATATAAATAAATAAAGATCATCACAACTTTCTCCATTTGCTTTAATATGTTTGCATAACTCTAATATAATTCAAAGTCGAACCCAAATTGATTTCTAATATAATTCAAAGTCGAACCCAAATTGATTTCTAAAGCGTTTAAGAACCATAACATTTCACTATAAGGAGAAGTATTCGTTCAAATCAAAGCTAGCATCATAGGCGAATGAAGACATAAGATACCTTTACATGAGCGGGCGTCGTAGGCGAATAGGGTCATGCATAGGGACCTAGCGTAGTAGAGGGTGCACGCACGTTGCCATTAGGCGCATCCTTAGAAGCTTATTAGTCACCTAATCAACTCTCAAATGCTCGATATTTTTATAACCGATTATGATCACATCACGACTTGAATCAAAACCTAGGTCTACTTAAATTGTTTATATGATGCTATGATTAATGGTTTGTGTGTGTGCCATCCATGGACTCTAAATTAGTCACTACATTTTTATATATATATATATATATACTTTTATCTAATAGATCATAGATCGTTGACAGAGTGTATATGGGTTGGGTTAGAGAAATGTTTTGGACCAATTCAAAATTTTTGGTTGGTTGAGTTAGTGATCTAAGGCATCGGAATAGAGTTCACACTCCACTCCAACCCTATATATTTCGAGTTGGGTTGTCAAATTATCTATAATATATTTTATATTAATAATTAAAATCTCAAAAATCTCAAATATCAAATATTCACATGTCAAATTGGGTAGAGTTAGGATTGAGTTGGGTTGTAACCCTATTTCCGGGTTGATCAGATTGGTCAGGTTGACCCGACCCAAAAAAATGTCAACTTGTGAACGGACCCAAATTTTCGATTTTCTAAAATTTCAATTCGATCAAAATTAGTGGTAAACATATATTTAATAAATTAAAATTAATTTAAGGCTTATTTTTATACCTTCACATAAATTTTATCTAATCAAAATTTATTTGGTATCAATAATATATTTGAGAATAATTTTAAATATAAATAAAATAATTTTTATAATTTCAAAATCACCCAGATTTACCATATTTATTTCTTTTAACTATTACTAGCGGTTCTTTTTTCTTAAACGTCAGCCATTTCTCGCTCCCATTACTACTGCACCCGGCCCCGCCGTGTCGCCGCATGCTCCACTCTCAGCCGTCGCAGTCTCAGCCTCCCTTCCAACTCGACGCCGCTCCCTGCCTCTCACACTCTCTTAA

mRNA sequence

ATGCAAGGAAACGATCATTATGTTTACCACAATGCTGCCATGGTGGTTGCTATTCCTAACGGGTATCCAACATCAACAACTACTAGAGAATGCTCGTCCGACCAGAAATGGGTCATGGAGCCATTTCTCGCTCCCATTACTACTGCACCCGGCCCCGCCGTGTCGCCGCATGCTCCACTCTCAGCCGTCGCAGTCTCAGCCTCCCTTCCAACTCGACGCCGCTCCCTGCCTCTCACACTCTCTTAA

Coding sequence (CDS)

ATGCAAGGAAACGATCATTATGTTTACCACAATGCTGCCATGGTGGTTGCTATTCCTAACGGGTATCCAACATCAACAACTACTAGAGAATGCTCGTCCGACCAGAAATGGGTCATGGAGCCATTTCTCGCTCCCATTACTACTGCACCCGGCCCCGCCGTGTCGCCGCATGCTCCACTCTCAGCCGTCGCAGTCTCAGCCTCCCTTCCAACTCGACGCCGCTCCCTGCCTCTCACACTCTCTTAA

Protein sequence

MQGNDHYVYHNAAMVVAIPNGYPTSTTTRECSSDQKWVMEPFLAPITTAPGPAVSPHAPLSAVAVSASLPTRRRSLPLTLS
Homology
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BLAST of Carg25016-RA vs. NCBI nr
Match: XP_023511563.1 (polygalacturonase-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 56.6 bits (135), Expect = 4.5e-05
Identity = 26/40 (65.00%), Postives = 29/40 (72.50%), Query Frame = 0 

Query: 1  MQGNDHYVYHNAAMVVAIPNGYPTSTTTRECSSDQKWVME 41
          MQ NDHYVY+N  + VA PNG   ST TRECSSDQK V +
Sbjct: 1  MQENDHYVYYNIVVKVATPNGCLASTATRECSSDQKGVQK 40

The following BLAST results are available for this feature:
BLAST of Carg25016-RA vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023511563.14.5e-0565.00polygalacturonase-like [Cucurbita pepo subsp. pepo][more]
BLAST of Carg25016-RA vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Carg25016-RA vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg25016-RA vs. TrEMBL
Match NameE-valueIdentityDescription
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Carg25016Carg25016gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg25016-RA.CDS.2Carg25016-RA.CDS.2CDS
Carg25016-RA.CDS.1Carg25016-RA.CDS.1CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg25016-RA.exon.2Carg25016-RA.exon.2exon
Carg25016-RA.exon.1Carg25016-RA.exon.1exon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Carg25016-RACarg25016-RA-proteinpolypeptide