Carg25016 (gene) Silver-seed gourd

NameCarg25016
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionUnknown protein
LocationCucurbita_argyrosperma_scaffold_176 : 95767 .. 97719 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAAGGAAACGATCATTATGTTTACCACAATGCTGCCATGGTGGTTGCTATTCCTAACGGGTATCCAACATCAACAACTACTAGAGAATGCTCGTCCGACCAGAAATGGGTCATGGAGGTGTGCGAACCGACTGGTGGGTCCATGCTCGCACGTGTGGACTGTGGATAGAAAATTGAGTACACATCCAATTGTTCGCTTAAGATAGCAGCGGTAGAAAAAAAAAAAACCAATAGTGGGGTTAGTTAGTGAGTATTTCTTAAAATATTCAAGCCACGTGATACTTTTATTCCAGGTAAATGCAAGACATTCCTGTAGGGTGACAAAGACATCGCAACTCGAGATCATGACACATGCATACGTCAATTGTATTTATTTTCTTAGATTTGGGCTAGAATAGGATGTTTTAAATTTAAATGTTTATTTATTTCATTTAGTATTTTGTTGTGTCGTTTTAAAGATGTTTTTGAACACATAAGTCCACGACAGTGTTTTAAGATGAAGTTTAAAGGCTAACTTTTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACGTTATGATAATGGTAGCGACTCTTGGTAAGTAGAAATCTAGGTTCGTTACAAACCGACGATTAGAGGACGATTGACGTGCCGTGAGCTGGGAATGTGAATTTGAGTCATATTAAAAAGAATCTCATAGAGATTCAAGATTCACTCGAATATAAATAAATAAAGATCATCACAACTTTCTCCATTTGCTTTAATATGTTTGCATAACTCTAATATAATTCAAAGTCGAACCCAAATTGATTTCTAATATAATTCAAAGTCGAACCCAAATTGATTTCTAAAGCGTTTAAGAACCATAACATTTCACTATAAGGAGAAGTATTCGTTCAAATCAAAGCTAGCATCATAGGCGAATGAAGACATAAGATACCTTTACATGAGCGGGCGTCGTAGGCGAATAGGGTCATGCATAGGGACCTAGCGTAGTAGAGGGTGCACGCACGTTGCCATTAGGCGCATCCTTAGAAGCTTATTAGTCACCTAATCAACTCTCAAATGCTCGATATTTTTATAACCGATTATGATCACATCACGACTTGAATCAAAACCTAGGTCTACTTAAATTGTTTATATGATGCTATGATTAATGGTTTGTGTGTGTGCCATCCATGGACTCTAAATTAGTCACTACATTTTTATATATATATATATATATACTTTTATCTAATAGATCATAGATCGTTGACAGAGTGTATATGGGTTGGGTTAGAGAAATGTTTTGGACCAATTCAAAATTTTTGGTTGGTTGAGTTAGTGATCTAAGGCATCGGAATAGAGTTCACACTCCACTCCAACCCTATATATTTCGAGTTGGGTTGTCAAATTATCTATAATATATTTTATATTAATAATTAAAATCTCAAAAATCTCAAATATCAAATATTCACATGTCAAATTGGGTAGAGTTAGGATTGAGTTGGGTTGTAACCCTATTTCCGGGTTGATCAGATTGGTCAGGTTGACCCGACCCAAAAAAATGTCAACTTGTGAACGGACCCAAATTTTCGATTTTCTAAAATTTCAATTCGATCAAAATTAGTGGTAAACATATATTTAATAAATTAAAATTAATTTAAGGCTTATTTTTATACCTTCACATAAATTTTATCTAATCAAAATTTATTTGGTATCAATAATATATTTGAGAATAATTTTAAATATAAATAAAATAATTTTTATAATTTCAAAATCACCCAGATTTACCATATTTATTTCTTTTAACTATTACTAGCGGTTCTTTTTTCTTAAACGTCAGCCATTTCTCGCTCCCATTACTACTGCACCCGGCCCCGCCGTGTCGCCGCATGCTCCACTCTCAGCCGTCGCAGTCTCAGCCTCCCTTCCAACTCGACGCCGCTCCCTGCCTCTCACACTCTCTTAA

mRNA sequence

ATGCAAGGAAACGATCATTATGTTTACCACAATGCTGCCATGGTGGTTGCTATTCCTAACGGGTATCCAACATCAACAACTACTAGAGAATGCTCGTCCGACCAGAAATGGGTCATGGAGCCATTTCTCGCTCCCATTACTACTGCACCCGGCCCCGCCGTGTCGCCGCATGCTCCACTCTCAGCCGTCGCAGTCTCAGCCTCCCTTCCAACTCGACGCCGCTCCCTGCCTCTCACACTCTCTTAA

Coding sequence (CDS)

ATGCAAGGAAACGATCATTATGTTTACCACAATGCTGCCATGGTGGTTGCTATTCCTAACGGGTATCCAACATCAACAACTACTAGAGAATGCTCGTCCGACCAGAAATGGGTCATGGAGCCATTTCTCGCTCCCATTACTACTGCACCCGGCCCCGCCGTGTCGCCGCATGCTCCACTCTCAGCCGTCGCAGTCTCAGCCTCCCTTCCAACTCGACGCCGCTCCCTGCCTCTCACACTCTCTTAA

Protein sequence

MQGNDHYVYHNAAMVVAIPNGYPTSTTTRECSSDQKWVMEPFLAPITTAPGPAVSPHAPLSAVAVSASLPTRRRSLPLTLS
BLAST of Carg25016 vs. NCBI nr
Match: XP_023511563.1 (polygalacturonase-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 56.6 bits (135), Expect = 4.5e-05
Identity = 26/40 (65.00%), Postives = 29/40 (72.50%), Query Frame = 0

Query: 1  MQGNDHYVYHNAAMVVAIPNGYPTSTTTRECSSDQKWVME 41
          MQ NDHYVY+N  + VA PNG   ST TRECSSDQK V +
Sbjct: 1  MQENDHYVYYNIVVKVATPNGCLASTATRECSSDQKGVQK 40

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_023511563.14.5e-0565.00polygalacturonase-like [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg25016-RACarg25016-RAmRNA


The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None