Carg24859-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg24859-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	DWNN domain, A CCHC-type zinc finger protein
Location	Cucurbita_argyrosperma_scaffold_245 : 101805 .. 104991 (+)
Sequence length	1543

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGATTTACTCTTATGTTATTATAATTTGGATTGTAACTTATTATCTTTTCTTTTTTGATACAGTCAAGAAAAAGAAGAAGAAGAAAGTTCGCATGCCTGCAAATGGTATTCAAATCTGTTGCATGATGTTTTTACTCTAATATTTCTACACTCCTGGCATTTTTTTTTGTTTTTTTTTTTATCAAGAATTTGGTTGAGTTTGCTCTAATGTCGGGGGTATTATTGTGGATGACTGACTCTCAGACGTACAATGGAAAACTTCTCAAGATCTTGCAATGGAGAACTATATGATGCCCATGGGTGGCCCAACGCCATATAATAACCCATATTGGATGGGCGCACAACCTGGTTTTGACGGATACATGTCTTCATATGCTGCTCCAATGCCGTACATGGGTGGTTATGGGTTAGGTCCCTTGGACATGCCATTTGGACCTGTCATGCCTCAGGATCCATTTGCTATGCAAAATTACATGTTTCCTGTTGCTCCGCCTCAGAGGTATGCCTTCATAGTTTATATGAAATGCAATAGTTTACATTTTATAAGAACATGAAATGCAATAGTTTACATTTTATAAGAACATGAAATGCAATGCTTAACAAGTTTCAATAGAAAAACGTTTAATGAGTTTTTTTTAATCGAATGGCAAAAGTCTCCGTGTTGTACTTGTAGTTGAAATGTAATGATAGAACTTTTGAAGATAAGAGCAGGGAAGGGACATGGTGTTGAAGTGTCTTGAAGAGACCCCTTCCCTCTTCTTTGAAGTGTTCGTAGGAAGTGCGTTTCTTTCTTTAAAAATATTTCTTTCAAAAGCATTTCAAATGAAATATTAGTGAATTGTATTACTTCCTTTGAACTAGAGCCTCTGTAACTAATCTACTTTGCTTATTAGCCCGTCTAGAAGCTTTTGGTAATCCTATGGCCTTTTTTTGTGTATCATACCTCTCAGTTACAATATGTACTTCTGTTTCCTAAATCGACCGCTTCCATTTGTTGTGGGCTTAGCTGGATGTGCAATGCATGTACTCATTGCTAATGAGGTCTACTTTGTGTTTCTTTCTGCGCACGAGACTGATTGCATGTCATCATATTGTTTGTCCCCATCCTATTTGTTTTGTGTTTTTCTGCTACTTTATCAAACGAATGCTTTCACACTGTTTTGTATCATTGCTGAAGAGATTTCAATATTGTACATATCTAGGGATCTTGCGGACTTCGGCATGGGTATGAATATTGCACCTCCCGCGATGAGCCGTGAGGAATTTGAGGCTCGGAAAACTAGTTTGAGGAGGAAGCATGAAAATGAGAGACGAGTTGAAAGGTAATTTGAAGCTTTATACTCCCTTTTCGTGAGAGAAAAATGTGGCAGGTTGGAGTGTGTTGTTCTGTGGGTGATCTTTGGACTCTTATTGGGTTCGATGTGTCTCTGTAGGCTTCATTGGCTAAGCCATTTTAAGCTGTTTTGAAAATATCCTTTCAATTGTATTAGCATTGTCCATACATATGCAGTTAATCTTGAAATTGTTGATATTATGATATATCAACTAAATTTATTGTGGAACATCTTGCAGCAGGGAGCGGGAGCCACCGAAAGATCGGGAGTTCGGAAGGGAAGTGAGCAGAGGCGGTGATGTCTCTTCAATGAAACAAAAATCTGTACGTCGTGTTCATATCTGTGCAGCACTTTTAATTTTGTTTTGAATTCTTTTATGCCATCAATTGGTCAGACATTAGTAAGTTAGCAGAGGATAAGACAAGTTTTCTTCACTAAATTCTTCATCTACCTGTAAGATAAAGTGATACATTGATTGATTTACTTTGGAGCACTGTAATTTGTACCAACTTTTGTATATTAATGTTGTGCTTTTGTTGTGTACACCTTATTCTATGAGTATTTTATCTGTTCCAAGAAGTATAACATGCAAGATAAAATCGAATTCCTTATCAACCTCCGATTTTTACTATAGGTTCGTGATTGCTTCTTAGGATATGAGATAACGAACCTCTTTTTATCGATGTATTATTATCGAGTAATTATCTTCAAACGTTTTGTCTTCTTCGTTGAGAAGAGATGCACAAAAGTTTACCCCTCTCAAATTGGTTGTCTGAACCCTCTCCTTTATCATGTGCAGAAGTTTGCACCTCAAACTTCAACTGGCGAACCAAACCAGATTCGTCGCCGACCTGAGAGCTCACCCGACACTGCAAGGAATGCTGAACCACCTTGCCCGCCCCCACGCAAAAGAAAGGCAGAGCACCTTGATCATGGTATTGAAAAGGATAACAATAATGATCGTTATGACCATGGTCACCATCGCCATCGTCAACATTCCGAGTCCCAAGCAGCCTCTGAAGTCTCGGCTAAATCTGCCACCAGTGCAGCTGCAGACCGCAAGCAGAAGACGAGCGTGTTTTCTCGCATTAGCTTCCAGGAGGAAGAGACAATGAAGAAACGGAAATTGCACCCTTCAAAGGAAGCACCACCAAGCGACTCTGGTTCTTCAGCAGCACATCACAAGGTATCATCCAGTGGACACTACGATGACTACAAGGCAAAGACAGTCACAACGGCGACTGCTCGTGGTAGGAGTAGAGCCGCTTCTGTTGATTGTGAGTCGAGCGACGACGATAGGCATTTCAAGAGAAAGCCATCCAGGTACGAGCCATCCCCTCCTCCACCATCAGACTGGGATCAGGGGGAGTCAAGACATCCCAGAGGCTCAACTAGAGAGCGGGAGCGGGAACGGGAACGAGAACGGGAGCGCAAGAGTAGTAGCTACAGCAAACATAGGTAGTATCTCGAGAGGATCATGAAGAACCAAGGCACCCCGAGAACGCAGCAGCCTCTGCAAATGTAGGGTAGTTCCATGGAGATGTGCCTTGCCACAGGTTTAAACAGAACCTATATCGCCCGGCTCCCGTCATCTTCCTAGCAGTAAAACGTCGAGAAACGCTGTCGAAAGCTCCAAATCCATTTGTGTATTGGGTTTAAAGTGAAAGTACAGGCATATGTGTTGAATGAGAAGCCATTGTTTTTGGGTTTCTTGCCGGATAAGACTGTCATAGAAGCTTGTACATTGTGTTCAAGCTTCTTCTTCTGTATTTGCTTGTCATAAATCTAATAATATACGAATGAAAATCACCACTCAGTTTCTTTTTATTCAGTCTGAATTTTAATTTAA

mRNA sequence

ATGTTGATTTACTCTTATGTTATTATAATTTGGATTGTAACTTATTATCTTTTCTTTTTTGATACAGTCAAGAAAAAGAAGAAGAAGAAAGTTCGCATGCCTGCAAATGACGTACAATGGAAAACTTCTCAAGATCTTGCAATGGAGAACTATATGATGCCCATGGGTGGCCCAACGCCATATAATAACCCATATTGGATGGGCGCACAACCTGGTTTTGACGGATACATGTCTTCATATGCTGCTCCAATGCCGTACATGGGTGGTTATGGGTTAGGTCCCTTGGACATGCCATTTGGACCTGTCATGCCTCAGGATCCATTTGCTATGCAAAATTACATGTTTCCTGTTGCTCCGCCTCAGAGGGATCTTGCGGACTTCGGCATGGGTATGAATATTGCACCTCCCGCGATGAGCCGTGAGGAATTTGAGGCTCGGAAAACTAGTTTGAGGAGGAAGCATGAAAATGAGAGACGAGTTGAAAGCAGGGAGCGGGAGCCACCGAAAGATCGGGAGTTCGGAAGGGAAGTGAGCAGAGGCGGTGATGTCTCTTCAATGAAACAAAAATCTAAGTTTGCACCTCAAACTTCAACTGGCGAACCAAACCAGATTCGTCGCCGACCTGAGAGCTCACCCGACACTGCAAGGAATGCTGAACCACCTTGCCCGCCCCCACGCAAAAGAAAGGCAGAGCACCTTGATCATGGTATTGAAAAGGATAACAATAATGATCGTTATGACCATGGTCACCATCGCCATCGTCAACATTCCGAGTCCCAAGCAGCCTCTGAAGTCTCGGCTAAATCTGCCACCAGTGCAGCTGCAGACCGCAAGCAGAAGACGAGCGTGTTTTCTCGCATTAGCTTCCAGGAGGAAGAGACAATGAAGAAACGGAAATTGCACCCTTCAAAGGAAGCACCACCAAGCGACTCTGGTTCTTCAGCAGCACATCACAAGGTATCATCCAGTGGACACTACGATGACTACAAGGCAAAGACAGTCACAACGGCGACTGCTCGTGGTAGGAGTAGAGCCGCTTCTGTTGATTGTGAGTCGAGCGACGACGATAGGCATTTCAAGAGAAAGCCATCCAGGTACGAGCCATCCCCTCCTCCACCATCAGACTGGGATCAGGGGGAGTCAAGACATCCCAGAGGCTCAACTAGAGAGCGGGAGCGGGAACGGGAACGAGAACGGGAGCGCAAGAGTAGTAGCTACAGCAAACATAGGTAGTATCTCGAGAGGATCATGAAGAACCAAGGCACCCCGAGAACGCAGCAGCCTCTGCAAATGTAGGTAAAACGTCGAGAAACGCTGTCGAAAGCTCCAAATCCATTTGTGTATTGGGTTTAAAGTGAAAGTACAGGCATATGTGTTGAATGAGAAGCCATTGTTTTTGGGTTTCTTGCCGGATAAGACTGTCATAGAAGCTTGTACATTGTGTTCAAGCTTCTTCTTCTGTATTTGCTTGTCATAAATCTAATAATATACGAATGAAAATCACCACTCAGTTTCTTTTTATTCAGTCTGAATTTTAATTTAA

Coding sequence (CDS)

ATGTTGATTTACTCTTATGTTATTATAATTTGGATTGTAACTTATTATCTTTTCTTTTTTGATACAGTCAAGAAAAAGAAGAAGAAGAAAGTTCGCATGCCTGCAAATGACGTACAATGGAAAACTTCTCAAGATCTTGCAATGGAGAACTATATGATGCCCATGGGTGGCCCAACGCCATATAATAACCCATATTGGATGGGCGCACAACCTGGTTTTGACGGATACATGTCTTCATATGCTGCTCCAATGCCGTACATGGGTGGTTATGGGTTAGGTCCCTTGGACATGCCATTTGGACCTGTCATGCCTCAGGATCCATTTGCTATGCAAAATTACATGTTTCCTGTTGCTCCGCCTCAGAGGGATCTTGCGGACTTCGGCATGGGTATGAATATTGCACCTCCCGCGATGAGCCGTGAGGAATTTGAGGCTCGGAAAACTAGTTTGAGGAGGAAGCATGAAAATGAGAGACGAGTTGAAAGCAGGGAGCGGGAGCCACCGAAAGATCGGGAGTTCGGAAGGGAAGTGAGCAGAGGCGGTGATGTCTCTTCAATGAAACAAAAATCTAAGTTTGCACCTCAAACTTCAACTGGCGAACCAAACCAGATTCGTCGCCGACCTGAGAGCTCACCCGACACTGCAAGGAATGCTGAACCACCTTGCCCGCCCCCACGCAAAAGAAAGGCAGAGCACCTTGATCATGGTATTGAAAAGGATAACAATAATGATCGTTATGACCATGGTCACCATCGCCATCGTCAACATTCCGAGTCCCAAGCAGCCTCTGAAGTCTCGGCTAAATCTGCCACCAGTGCAGCTGCAGACCGCAAGCAGAAGACGAGCGTGTTTTCTCGCATTAGCTTCCAGGAGGAAGAGACAATGAAGAAACGGAAATTGCACCCTTCAAAGGAAGCACCACCAAGCGACTCTGGTTCTTCAGCAGCACATCACAAGGTATCATCCAGTGGACACTACGATGACTACAAGGCAAAGACAGTCACAACGGCGACTGCTCGTGGTAGGAGTAGAGCCGCTTCTGTTGATTGTGAGTCGAGCGACGACGATAGGCATTTCAAGAGAAAGCCATCCAGGTACGAGCCATCCCCTCCTCCACCATCAGACTGGGATCAGGGGGAGTCAAGACATCCCAGAGGCTCAACTAGAGAGCGGGAGCGGGAACGGGAACGAGAACGGGAGCGCAAGAGTAGTAGCTACAGCAAACATAGGTAG

Protein sequence

MLIYSYVIIIWIVTYYLFFFDTVKKKKKKKVRMPANDVQWKTSQDLAMENYMMPMGGPTPYNNPYWMGAQPGFDGYMSSYAAPMPYMGGYGLGPLDMPFGPVMPQDPFAMQNYMFPVAPPQRDLADFGMGMNIAPPAMSREEFEARKTSLRRKHENERRVESREREPPKDREFGREVSRGGDVSSMKQKSKFAPQTSTGEPNQIRRRPESSPDTARNAEPPCPPPRKRKAEHLDHGIEKDNNNDRYDHGHHRHRQHSESQAASEVSAKSATSAAADRKQKTSVFSRISFQEEETMKKRKLHPSKEAPPSDSGSSAAHHKVSSSGHYDDYKAKTVTTATARGRSRAASVDCESSDDDRHFKRKPSRYEPSPPPPSDWDQGESRHPRGSTRERERERERERERKSSSYSKHR

Homology

[Close]

BLAST of Carg24859-RA vs. NCBI nr
Match: XP_022923325.1 (E3 ubiquitin ligase PQT3-like isoform X3 [Cucurbita moschata] >XP_022923326.1 E3 ubiquitin ligase PQT3-like isoform X4 [Cucurbita moschata])

HSP 1 Score: 430.3 bits (1105), Expect = 7.6e-117
Identity = 259/301 (86.05%), Postives = 259/301 (86.05%), Query Frame = 0


Query: 31  VRMPANDVQWKTSQDLAMENYMMPMGGPTPYNNPYWMGAQPGFDGYMSSYAAPMPYMGGY 90
           VRMPANDVQWKTSQDLAMENYMMPMGGPTPYNNPYWMGAQPGFDGYMSSYAAPMPYMGGY
Sbjct: 481 VRMPANDVQWKTSQDLAMENYMMPMGGPTPYNNPYWMGAQPGFDGYMSSYAAPMPYMGGY 540

Query: 91  GLGPLDMPFGPVMPQDPFAMQNYMFPVAPPQRDLADFGMGMNIAPPAMSREEFEARKTSL 150
           GLGPLDMPFGPVMPQDPFAMQNYMFPVAPPQRDLADFGMGMNIAPPAMSREEFEARKTSL
Sbjct: 541 GLGPLDMPFGPVMPQDPFAMQNYMFPVAPPQRDLADFGMGMNIAPPAMSREEFEARKTSL 600

Query: 151 RRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDVSSMKQKSKFAPQTSTGEPNQIRRRPES 210
           RR                             DVSSMKQKSKFAPQTSTGEPNQIRRRPES
Sbjct: 601 RRNHENERRVESREREPPKDREFGREVSRGSDVSSMKQKSKFAPQTSTGEPNQIRRRPES 660

Query: 211 SPDTARNAEPPCPPPRKRKAEHLDHGIEKDNXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 270
           SPDTARNAEPPCPPPRKRKAEHLDHGIEKDNXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 661 SPDTARNAEPPCPPPRKRKAEHLDHGIEKDNXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 720

Query: 271 XXXXXXRKQKTSVFSRISFQEEETMKKRKLHPSKEAXXXXXXXXXXXXXVSSSGHYDDYK 330
           XXXXXXRKQKTSVFSRISFQEEETMKKRKLHPSKEA             VSSSGHYDDYK
Sbjct: 721 XXXXXXRKQKTSVFSRISFQEEETMKKRKLHPSKEAPPSDSGASAAHHKVSSSGHYDDYK 780

Query: 331 A 332
           A
Sbjct: 781 A 781

[Close]

BLAST of Carg24859-RA vs. NCBI nr
Match: XP_022923322.1 (E3 ubiquitin ligase PQT3-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 430.3 bits (1105), Expect = 7.6e-117
Identity = 259/301 (86.05%), Postives = 259/301 (86.05%), Query Frame = 0


Query: 31  VRMPANDVQWKTSQDLAMENYMMPMGGPTPYNNPYWMGAQPGFDGYMSSYAAPMPYMGGY 90
           VRMPANDVQWKTSQDLAMENYMMPMGGPTPYNNPYWMGAQPGFDGYMSSYAAPMPYMGGY
Sbjct: 481 VRMPANDVQWKTSQDLAMENYMMPMGGPTPYNNPYWMGAQPGFDGYMSSYAAPMPYMGGY 540

Query: 91  GLGPLDMPFGPVMPQDPFAMQNYMFPVAPPQRDLADFGMGMNIAPPAMSREEFEARKTSL 150
           GLGPLDMPFGPVMPQDPFAMQNYMFPVAPPQRDLADFGMGMNIAPPAMSREEFEARKTSL
Sbjct: 541 GLGPLDMPFGPVMPQDPFAMQNYMFPVAPPQRDLADFGMGMNIAPPAMSREEFEARKTSL 600

Query: 151 RRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDVSSMKQKSKFAPQTSTGEPNQIRRRPES 210
           RR                             DVSSMKQKSKFAPQTSTGEPNQIRRRPES
Sbjct: 601 RRNHENERRVESREREPPKDREFGREVSRGSDVSSMKQKSKFAPQTSTGEPNQIRRRPES 660

Query: 211 SPDTARNAEPPCPPPRKRKAEHLDHGIEKDNXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 270
           SPDTARNAEPPCPPPRKRKAEHLDHGIEKDNXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 661 SPDTARNAEPPCPPPRKRKAEHLDHGIEKDNXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 720

Query: 271 XXXXXXRKQKTSVFSRISFQEEETMKKRKLHPSKEAXXXXXXXXXXXXXVSSSGHYDDYK 330
           XXXXXXRKQKTSVFSRISFQEEETMKKRKLHPSKEA             VSSSGHYDDYK
Sbjct: 721 XXXXXXRKQKTSVFSRISFQEEETMKKRKLHPSKEAPPSDSGASAAHHKVSSSGHYDDYK 780

Query: 331 A 332
           A
Sbjct: 781 A 781

[Close]

BLAST of Carg24859-RA vs. NCBI nr
Match: XP_022923324.1 (E3 ubiquitin ligase PQT3-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 417.5 bits (1072), Expect = 5.1e-113
Identity = 279/301 (92.69%), Postives = 279/301 (92.69%), Query Frame = 0


Query: 31  VRMPANDVQWKTSQDLAMENYMMPMGGPTPYNNPYWMGAQPGFDGYMSSYAAPMPYMGGY 90
           VRMPANDVQWKTSQDLAMENYMMPMGGPTPYNNPYWMGAQPGFDGYMSSYAAPMPYMGGY
Sbjct: 481 VRMPANDVQWKTSQDLAMENYMMPMGGPTPYNNPYWMGAQPGFDGYMSSYAAPMPYMGGY 540

Query: 91  GLGPLDMPFGPVMPQDPFAMQNYMFPVAPPQRDLADFGMGMNIAPPAMSREEFEARKTSL 150
           GLGPLDMPFGPVMPQDPFAMQNYMFPVAPPQRDLADFGMGMNIAPPAMSREEFEARKTSL
Sbjct: 541 GLGPLDMPFGPVMPQDPFAMQNYMFPVAPPQRDLADFGMGMNIAPPAMSREEFEARKTSL 600

Query: 151 RRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDVSSMKQKSKFAPQTSTGEPNQIRRRPES 210
           RR     XXXXXXXXXXXXXXXXXXXXXXXX    MKQKSKFAPQTSTGEPNQIRRRPES
Sbjct: 601 RR-NHENXXXXXXXXXXXXXXXXXXXXXXXXXXXXMKQKSKFAPQTSTGEPNQIRRRPES 660

Query: 211 SPDTARNAEPPCPPPRKRKAEHLDHGIEKDNXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 270
           SPDTARNAEPPCPPPRKRKAEHLDHGIEKDNXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 661 SPDTARNAEPPCPPPRKRKAEHLDHGIEKDNXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 720

Query: 271 XXXXXXRKQKTSVFSRISFQEEETMKKRKLHPSKEAXXXXXXXXXXXXXVSSSGHYDDYK 330
           XXXXXXRKQKTSVFSRISFQEEETMKKRKLHPSKEA             VSSSGHYDDYK
Sbjct: 721 XXXXXXRKQKTSVFSRISFQEEETMKKRKLHPSKEAPPSDSGASAAHHKVSSSGHYDDYK 780

Query: 331 A 332
           A
Sbjct: 781 A 780

[Close]

BLAST of Carg24859-RA vs. NCBI nr
Match: XP_023552395.1 (E3 ubiquitin ligase PQT3-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 416.4 bits (1069), Expect = 1.1e-112
Identity = 282/301 (93.69%), Postives = 282/301 (93.69%), Query Frame = 0


Query: 31  VRMPANDVQWKTSQDLAMENYMMPMGGPTPYNNPYWMGAQPGFDGYMSSYAAPMPYMGGY 90
           VRMPANDVQWKTSQDLAMENYMMPMGGPTPYNNPYWMGAQPGFDGYMSSYAAPMPYMGGY
Sbjct: 481 VRMPANDVQWKTSQDLAMENYMMPMGGPTPYNNPYWMGAQPGFDGYMSSYAAPMPYMGGY 540

Query: 91  GLGPLDMPFGPVMPQDPFAMQNYMFPVAPPQRDLADFGMGMNIAPPAMSREEFEARKTSL 150
           GLGPLDMPFGPVMPQDPFAMQNYMFPVAPPQRDLADFGMGMNIAPPAMSREEFEARK SL
Sbjct: 541 GLGPLDMPFGPVMPQDPFAMQNYMFPVAPPQRDLADFGMGMNIAPPAMSREEFEARKASL 600

Query: 151 RRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDVSSMKQKSKFAPQTSTGEPNQIRRRPES 210
           RRXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  SSMKQKSKFAPQTSTGEPNQ RRRPES
Sbjct: 601 RRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSMKQKSKFAPQTSTGEPNQTRRRPES 660

Query: 211 SPDTARNAEPPCPPPRKRKAEHLDHGIEKDNXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 270
           SPDTARNA PPCPPPRKRKAEHLDHGIEKDNXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 661 SPDTARNAGPPCPPPRKRKAEHLDHGIEKDNXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 720

Query: 271 XXXXXXRKQKTSVFSRISFQEEETMKKRKLHPSKEAXXXXXXXXXXXXXVSSSGHYDDYK 330
           XXXXXXRKQKTSVFSRISF EEETMKKRKLHPSKEA             VSSSGHYDDYK
Sbjct: 721 XXXXXXRKQKTSVFSRISFLEEETMKKRKLHPSKEAPPSDSGASAAHHKVSSSGHYDDYK 780

Query: 331 A 332
           A
Sbjct: 781 A 781

[Close]

BLAST of Carg24859-RA vs. NCBI nr
Match: XP_023007692.1 (E3 ubiquitin ligase PQT3-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 412.5 bits (1059), Expect = 1.6e-111
Identity = 282/301 (93.69%), Postives = 283/301 (94.02%), Query Frame = 0


Query: 31  VRMPANDVQWKTSQDLAMENYMMPMGGPTPYNNPYWMGAQPGFDGYMSSYAAPMPYMGGY 90
           VRMPANDVQWKTSQDLAMENYMMPMGGPTPY NPYWMGAQPGFDGYMSSYAAPMPYMGGY
Sbjct: 481 VRMPANDVQWKTSQDLAMENYMMPMGGPTPY-NPYWMGAQPGFDGYMSSYAAPMPYMGGY 540

Query: 91  GLGPLDMPFGPVMPQDPFAMQNYMFPVAPPQRDLADFGMGMNIAPPAMSREEFEARKTSL 150
           GLGPLDMPFGPVMPQDPFAMQNYM PVAPPQRDLA+FGMGMNIAPPAMSREEFEARK SL
Sbjct: 541 GLGPLDMPFGPVMPQDPFAMQNYMLPVAPPQRDLANFGMGMNIAPPAMSREEFEARKASL 600

Query: 151 RRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDVSSMKQKSKFAPQTSTGEPNQIRRRPES 210
           RRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDVSSMKQKSKFAPQTSTGEPNQIR RPES
Sbjct: 601 RRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDVSSMKQKSKFAPQTSTGEPNQIRHRPES 660

Query: 211 SPDTARNAEPPCPPPRKRKAEHLDHGIEKDNXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 270
           SPDTARNA PPCPPPRKRKAEHLDHGIEKDNXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 661 SPDTARNAGPPCPPPRKRKAEHLDHGIEKDNXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 720

Query: 271 XXXXXXRKQKTSVFSRISFQEEETMKKRKLHPSKEAXXXXXXXXXXXXXVSSSGHYDDYK 330
           XXXXXXRKQKTSVFSRISFQEEETMKKRKLHPSKEA             VSSSGHYDDYK
Sbjct: 721 XXXXXXRKQKTSVFSRISFQEEETMKKRKLHPSKEAPPSDSGASAAHHKVSSSGHYDDYK 780

Query: 331 A 332
           A
Sbjct: 781 A 780

[Close]

BLAST of Carg24859-RA vs. TAIR10
Match: AT5G47430.1 (DWNN domain, a CCHC-type zinc finger)

HSP 1 Score: 66.6 bits (161), Expect = 4.0e-11
Identity = 51/146 (34.93%), Postives = 63/146 (43.15%), Query Frame = 0


Query: 32  RMPANDVQWKTSQDLAMENYMMPMGGPTPYNNPYWMGAQP-------------------- 91
           R+P ND+QW    DLA  +YMM M GP P    Y+ G QP                    
Sbjct: 484 RVPGNDMQWNPVPDLAGPDYMMQM-GPGP---QYFNGMQPXXXXXXXXXXXXXXXXXXXX 543

Query: 92  -GFDGYMSSYAAPMPYMGGYGLGPLDMPFG---PVMPQDPFAMQNYMFP-VAPPQRDLAD 151
                              YGL P+DM FG    +M  DPF  Q + FP + PP RDLA+
Sbjct: 544 XXXXXXXXXXXXXXXXXXXYGLNPMDMGFGGGMNMMHPDPFMAQGFGFPNIPPPHRDLAE 603

Query: 152 FGMGMNIAPPAMSREEFEARKTSLRR 153
            G  MN+    M R+E EAR   + R
Sbjct: 604 MGNRMNLQRAMMGRDEAEARNAEMLR 625

[Close]

BLAST of Carg24859-RA vs. TAIR10
Match: AT4G17410.3 (DWNN domain, a CCHC-type zinc finger)

HSP 1 Score: 61.2 bits (147), Expect = 1.7e-09
Identity = 46/123 (37.40%), Postives = 56/123 (45.53%), Query Frame = 0


Query: 45  DLAMENYMMPMGGPTPYNNPYWMGAQPGFDGYMSSYAAPMPYMGGYGLGPLDMP------ 104
           DLA  +YMMPM GP P  N Y+ G QP                                 
Sbjct: 483 DLAGPDYMMPM-GPGP-GNQYFNGFQPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 542

Query: 105 --------FGPVMPQDPFAMQNYMFP-VAPPQRDLADFGMGMNIAPPAMSREEFEARKTS 153
                   FG V+  DPFA Q + FP + PP RDLA+ G  MN+  P M REEFEA+KT 
Sbjct: 543 XXXXXXYGFGGVIHPDPFAAQGFGFPNIPPPYRDLAEMGNRMNLQHPIMGREEFEAKKTE 602

[Close]

BLAST of Carg24859-RA vs. Swiss-Prot
Match: sp|B9DFV2|PQT3L_ARATH (E3 ubiquitin ligase PQT3-like OS=Arabidopsis thaliana OX=3702 GN=At5g47430 PE=1 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 7.2e-10
Identity = 51/146 (34.93%), Postives = 63/146 (43.15%), Query Frame = 0


Query: 32  RMPANDVQWKTSQDLAMENYMMPMGGPTPYNNPYWMGAQP-------------------- 91
           R+P ND+QW    DLA  +YMM M GP P    Y+ G QP                    
Sbjct: 484 RVPGNDMQWNPVPDLAGPDYMMQM-GPGP---QYFNGMQPXXXXXXXXXXXXXXXXXXXX 543

Query: 92  -GFDGYMSSYAAPMPYMGGYGLGPLDMPFG---PVMPQDPFAMQNYMFP-VAPPQRDLAD 151
                              YGL P+DM FG    +M  DPF  Q + FP + PP RDLA+
Sbjct: 544 XXXXXXXXXXXXXXXXXXXYGLNPMDMGFGGGMNMMHPDPFMAQGFGFPNIPPPHRDLAE 603

Query: 152 FGMGMNIAPPAMSREEFEARKTSLRR 153
            G  MN+    M R+E EAR   + R
Sbjct: 604 MGNRMNLQRAMMGRDEAEARNAEMLR 625

[Close]

BLAST of Carg24859-RA vs. Swiss-Prot
Match: sp|F4JP52|PQT3_ARATH (E3 ubiquitin ligase PARAQUAT TOLERANCE 3 OS=Arabidopsis thaliana OX=3702 GN=PQT3 PE=1 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 3.0e-08
Identity = 46/123 (37.40%), Postives = 56/123 (45.53%), Query Frame = 0


Query: 45  DLAMENYMMPMGGPTPYNNPYWMGAQPGFDGYMSSYAAPMPYMGGYGLGPLDMP------ 104
           DLA  +YMMPM GP P  N Y+ G QP                                 
Sbjct: 482 DLAGPDYMMPM-GPGP-GNQYFNGFQPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 541

Query: 105 --------FGPVMPQDPFAMQNYMFP-VAPPQRDLADFGMGMNIAPPAMSREEFEARKTS 153
                   FG V+  DPFA Q + FP + PP RDLA+ G  MN+  P M REEFEA+KT 
Sbjct: 542 XXXXXXYGFGGVIHPDPFAAQGFGFPNIPPPYRDLAEMGNRMNLQHPIMGREEFEAKKTE 601

[Close]

BLAST of Carg24859-RA vs. TrEMBL
Match: tr|A0A1S3BK09|A0A1S3BK09_CUCME (E3 ubiquitin-protein ligase RBBP6-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103490875 PE=4 SV=1)

HSP 1 Score: 263.5 bits (672), Expect = 8.1e-67
Identity = 140/192 (72.92%), Postives = 141/192 (73.44%), Query Frame = 0


Query: 35  ANDVQWKTSQDLAMENYMMPMGGPTPYNNPYWMGAQPGFDGYMS--SYAAPMPYMGGYGL 94
           AND QWKTSQDLA ENYMMPMGGP PY NPYW G Q GFDGYM+  SYAAPMPYMGGYGL
Sbjct: 486 ANDFQWKTSQDLATENYMMPMGGPAPY-NPYWTGMQSGFDGYMNMPSYAAPMPYMGGYGL 545

Query: 95  GPLDMPFGPVMPQDPFAMQNYMFPVAPPQRDLADFGMGMNIAPPAMSREEFEARKTSL-- 154
           GPLDMPFGPVMPQDPFAMQNYMFPVAPPQRDLADFGMGMNIAPPAMSREEFEARK  L  
Sbjct: 546 GPLDMPFGPVMPQDPFAMQNYMFPVAPPQRDLADFGMGMNIAPPAMSREEFEARKAGLNM 605

Query: 155 RRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDVSSMKQKSKFAPQTSTGEPNQIRRRPES 214
           RR                             D  SMKQKSKFAPQTST E N  RRRPES
Sbjct: 606 RRKHENERRVESREREPPKDREFGREVCTSGDGPSMKQKSKFAPQTSTSEHNPNRRRPES 665

Query: 215 SPDTARNAEPPC 223
           SPD ARN  PPC
Sbjct: 666 SPDGARNVGPPC 676

[Close]

BLAST of Carg24859-RA vs. TrEMBL
Match: tr|A0A1S3BKM0|A0A1S3BKM0_CUCME (E3 ubiquitin-protein ligase RBBP6-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103490875 PE=4 SV=1)

HSP 1 Score: 261.9 bits (668), Expect = 2.4e-66
Identity = 139/191 (72.77%), Postives = 140/191 (73.30%), Query Frame = 0


Query: 35  ANDVQWKTSQDLAMENYMMPMGGPTPYNNPYWMGAQPGFDGYMS--SYAAPMPYMGGYGL 94
           AND QWKTSQDLA ENYMMPMGGP PY NPYW G Q GFDGYM+  SYAAPMPYMGGYGL
Sbjct: 486 ANDFQWKTSQDLATENYMMPMGGPAPY-NPYWTGMQSGFDGYMNMPSYAAPMPYMGGYGL 545

Query: 95  GPLDMPFGPVMPQDPFAMQNYMFPVAPPQRDLADFGMGMNIAPPAMSREEFEARKTSLR- 154
           GPLDMPFGPVMPQDPFAMQNYMFPVAPPQRDLADFGMGMNIAPPAMSREEFEARK  L  
Sbjct: 546 GPLDMPFGPVMPQDPFAMQNYMFPVAPPQRDLADFGMGMNIAPPAMSREEFEARKAGLNM 605

Query: 155 RXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDVSSMKQKSKFAPQTSTGEPNQIRRRPESS 214
           R                             D  SMKQKSKFAPQTST E N  RRRPESS
Sbjct: 606 RRKHENERRVEREREPPKDREFGREVCTSGDGPSMKQKSKFAPQTSTSEHNPNRRRPESS 665

Query: 215 PDTARNAEPPC 223
           PD ARN  PPC
Sbjct: 666 PDGARNVGPPC 675

[Close]

BLAST of Carg24859-RA vs. TrEMBL
Match: tr|A0A0A0L6U2|A0A0A0L6U2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G019910 PE=4 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 1.1e-63
Identity = 136/191 (71.20%), Postives = 138/191 (72.25%), Query Frame = 0


Query: 35  ANDVQWKTSQDLAMENYMMPMGGPTPYNNPYWMGAQPGFDGYMS--SYAAPMPYMGGYGL 94
           AND QWKTSQDLA ENYMMPMGGP PY NPYW G Q GFDGYM+  SYAAPMPYMGGYGL
Sbjct: 486 ANDFQWKTSQDLATENYMMPMGGPAPY-NPYWTGMQSGFDGYMNMPSYAAPMPYMGGYGL 545

Query: 95  GPLDMPFGPVMPQDPFAMQNYMFPVAPPQRDLADFGMGMNIAPPAMSREEFEARKT--SL 154
           GPLDMPFGPVMPQDPFAMQNYMFPVAPPQRDLADFGMGMNIAP AMSREEFEARK   +L
Sbjct: 546 GPLDMPFGPVMPQDPFAMQNYMFPVAPPQRDLADFGMGMNIAPHAMSREEFEARKAGLNL 605

Query: 155 RRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDVSSMKQKSKFAPQTSTGEPNQIRRRPES 214
           RR                             D  SMKQKSKFAPQTS  E N  RRRPES
Sbjct: 606 RRKHENERRVESREREPPKDREFGREVCTGGDGPSMKQKSKFAPQTSNSEHNPNRRRPES 665

Query: 215 SPDTARNAEPP 222
           SPD  RN  PP
Sbjct: 666 SPDVPRNIGPP 675

[Close]

BLAST of Carg24859-RA vs. TrEMBL
Match: tr|A0A1U8HH04|A0A1U8HH04_GOSHI (uncharacterized protein LOC107886064 isoform X2 OS=Gossypium hirsutum OX=3635 GN=LOC107886064 PE=4 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 1.0e-45
Identity = 110/204 (53.92%), Postives = 126/204 (61.76%), Query Frame = 0


Query: 31  VRMPANDVQWKTSQDLAMENYMMPMGGPTPYNNPYWMGAQPGFDGYMSSYAAPMPYMGGY 90
           VR+P ND+QWK  QDLA ENYMM M GP+ Y NPYW G QPG DG+M  Y   MPYMGGY
Sbjct: 481 VRLPGNDLQWKAPQDLAAENYMMSM-GPSAY-NPYWTGMQPGMDGFMGPYGGAMPYMGGY 540

Query: 91  GLGPLDMPFGPVMPQDPFAMQNYMFPVAPPQRDLADFGMGMNIAPPAMSREEFEARKTSL 150
           GL P DMPFG VMP D F  QNYMFP  PPQRDLA+FGMGMN+APP MSREEFEAR+ +L
Sbjct: 541 GLSPFDMPFGGVMPPDAFGAQNYMFPPVPPQRDLAEFGMGMNVAPPIMSREEFEARQAAL 600

Query: 151 RRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDVSSMKQKSKFAPQTSTGE--PNQIRRRP 210
           RR                             DVSS+K KSK  PQ S G+   + +R R 
Sbjct: 601 RR--KRENERRSEREFSTRDREFVREVSNSADVSSLKSKSKPIPQMSGGDRRSDHLRHRS 660

Query: 211 E-SSPDTARNAEPPCPPPRKRKAE 232
           E +SP+ +       P P KRKA+
Sbjct: 661 ERTSPERSLQDHEAPPRPAKRKAD 680

[Close]

BLAST of Carg24859-RA vs. TrEMBL
Match: tr|A0A1U8HH25|A0A1U8HH25_GOSHI (uncharacterized protein LOC107886064 isoform X1 OS=Gossypium hirsutum OX=3635 GN=LOC107886064 PE=4 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 1.0e-45
Identity = 110/204 (53.92%), Postives = 126/204 (61.76%), Query Frame = 0


Query: 31  VRMPANDVQWKTSQDLAMENYMMPMGGPTPYNNPYWMGAQPGFDGYMSSYAAPMPYMGGY 90
           VR+P ND+QWK  QDLA ENYMM M GP+ Y NPYW G QPG DG+M  Y   MPYMGGY
Sbjct: 484 VRLPGNDLQWKAPQDLAAENYMMSM-GPSAY-NPYWTGMQPGMDGFMGPYGGAMPYMGGY 543

Query: 91  GLGPLDMPFGPVMPQDPFAMQNYMFPVAPPQRDLADFGMGMNIAPPAMSREEFEARKTSL 150
           GL P DMPFG VMP D F  QNYMFP  PPQRDLA+FGMGMN+APP MSREEFEAR+ +L
Sbjct: 544 GLSPFDMPFGGVMPPDAFGAQNYMFPPVPPQRDLAEFGMGMNVAPPIMSREEFEARQAAL 603

Query: 151 RRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDVSSMKQKSKFAPQTSTGE--PNQIRRRP 210
           RR                             DVSS+K KSK  PQ S G+   + +R R 
Sbjct: 604 RR--KRENERRSEREFSTRDREFVREVSNSADVSSLKSKSKPIPQMSGGDRRSDHLRHRS 663

Query: 211 E-SSPDTARNAEPPCPPPRKRKAE 232
           E +SP+ +       P P KRKA+
Sbjct: 664 ERTSPERSLQDHEAPPRPAKRKAD 683

The following BLAST results are available for this feature:

BLAST of Carg24859-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022923325.1	7.6e-117	86.05	E3 ubiquitin ligase PQT3-like isoform X3 [Cucurbita moschata] >XP_022923326.1 E3...	[more]
XP_022923322.1	7.6e-117	86.05	E3 ubiquitin ligase PQT3-like isoform X1 [Cucurbita moschata]	[more]
XP_022923324.1	5.1e-113	92.69	E3 ubiquitin ligase PQT3-like isoform X2 [Cucurbita moschata]	[more]
XP_023552395.1	1.1e-112	93.69	E3 ubiquitin ligase PQT3-like isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_023007692.1	1.6e-111	93.69	E3 ubiquitin ligase PQT3-like isoform X1 [Cucurbita maxima]	[more]

BLAST of Carg24859-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT5G47430.1	4.0e-11	34.93	DWNN domain, a CCHC-type zinc finger	[more]
AT4G17410.3	1.7e-09	37.40	DWNN domain, a CCHC-type zinc finger	[more]

BLAST of Carg24859-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|B9DFV2\|PQT3L_ARATH	7.2e-10	34.93	E3 ubiquitin ligase PQT3-like OS=Arabidopsis thaliana OX=3702 GN=At5g47430 PE=1 ...	[more]
sp\|F4JP52\|PQT3_ARATH	3.0e-08	37.40	E3 ubiquitin ligase PARAQUAT TOLERANCE 3 OS=Arabidopsis thaliana OX=3702 GN=PQT3...	[more]

BLAST of Carg24859-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BK09\|A0A1S3BK09_CUCME	8.1e-67	72.92	E3 ubiquitin-protein ligase RBBP6-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC...	[more]
tr\|A0A1S3BKM0\|A0A1S3BKM0_CUCME	2.4e-66	72.77	E3 ubiquitin-protein ligase RBBP6-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC...	[more]
tr\|A0A0A0L6U2\|A0A0A0L6U2_CUCSA	1.1e-63	71.20	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G019910 PE=4 SV=1	[more]
tr\|A0A1U8HH04\|A0A1U8HH04_GOSHI	1.0e-45	53.92	uncharacterized protein LOC107886064 isoform X2 OS=Gossypium hirsutum OX=3635 GN...	[more]
tr\|A0A1U8HH25\|A0A1U8HH25_GOSHI	1.0e-45	53.92	uncharacterized protein LOC107886064 isoform X1 OS=Gossypium hirsutum OX=3635 GN...	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg24859	Carg24859	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg24859-RA	Carg24859-RA-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg24859-RA.exon.1	Carg24859-RA.exon.1	exon
Carg24859-RA.exon.2	Carg24859-RA.exon.2	exon
Carg24859-RA.exon.3	Carg24859-RA.exon.3	exon
Carg24859-RA.exon.4	Carg24859-RA.exon.4	exon
Carg24859-RA.exon.5	Carg24859-RA.exon.5	exon
Carg24859-RA.exon.6	Carg24859-RA.exon.6	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg24859-RA.CDS.1	Carg24859-RA.CDS.1	CDS
Carg24859-RA.CDS.2	Carg24859-RA.CDS.2	CDS
Carg24859-RA.CDS.3	Carg24859-RA.CDS.3	CDS
Carg24859-RA.CDS.4	Carg24859-RA.CDS.4	CDS
Carg24859-RA.CDS.5	Carg24859-RA.CDS.5	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg24859-RA.three_prime_UTR.1	Carg24859-RA.three_prime_UTR.1	three_prime_UTR
Carg24859-RA.three_prime_UTR.2	Carg24859-RA.three_prime_UTR.2	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 140..160
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 222..259
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 183..205
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 260..289
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 347..365
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 138..410
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 378..403
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 140..178
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 290..305