Carg24859 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg24859
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	DWNN domain, A CCHC-type zinc finger protein
Location	Cucurbita_argyrosperma_scaffold_245 : 101805 .. 104991 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGATTTACTCTTATGTTATTATAATTTGGATTGTAACTTATTATCTTTTCTTTTTTGATACAGTCAAGAAAAAGAAGAAGAAGAAAGTTCGCATGCCTGCAAATGGTATTCAAATCTGTTGCATGATGTTTTTACTCTAATATTTCTACACTCCTGGCATTTTTTTTTGTTTTTTTTTTTATCAAGAATTTGGTTGAGTTTGCTCTAATGTCGGGGGTATTATTGTGGATGACTGACTCTCAGACGTACAATGGAAAACTTCTCAAGATCTTGCAATGGAGAACTATATGATGCCCATGGGTGGCCCAACGCCATATAATAACCCATATTGGATGGGCGCACAACCTGGTTTTGACGGATACATGTCTTCATATGCTGCTCCAATGCCGTACATGGGTGGTTATGGGTTAGGTCCCTTGGACATGCCATTTGGACCTGTCATGCCTCAGGATCCATTTGCTATGCAAAATTACATGTTTCCTGTTGCTCCGCCTCAGAGGTATGCCTTCATAGTTTATATGAAATGCAATAGTTTACATTTTATAAGAACATGAAATGCAATAGTTTACATTTTATAAGAACATGAAATGCAATGCTTAACAAGTTTCAATAGAAAAACGTTTAATGAGTTTTTTTTAATCGAATGGCAAAAGTCTCCGTGTTGTACTTGTAGTTGAAATGTAATGATAGAACTTTTGAAGATAAGAGCAGGGAAGGGACATGGTGTTGAAGTGTCTTGAAGAGACCCCTTCCCTCTTCTTTGAAGTGTTCGTAGGAAGTGCGTTTCTTTCTTTAAAAATATTTCTTTCAAAAGCATTTCAAATGAAATATTAGTGAATTGTATTACTTCCTTTGAACTAGAGCCTCTGTAACTAATCTACTTTGCTTATTAGCCCGTCTAGAAGCTTTTGGTAATCCTATGGCCTTTTTTTGTGTATCATACCTCTCAGTTACAATATGTACTTCTGTTTCCTAAATCGACCGCTTCCATTTGTTGTGGGCTTAGCTGGATGTGCAATGCATGTACTCATTGCTAATGAGGTCTACTTTGTGTTTCTTTCTGCGCACGAGACTGATTGCATGTCATCATATTGTTTGTCCCCATCCTATTTGTTTTGTGTTTTTCTGCTACTTTATCAAACGAATGCTTTCACACTGTTTTGTATCATTGCTGAAGAGATTTCAATATTGTACATATCTAGGGATCTTGCGGACTTCGGCATGGGTATGAATATTGCACCTCCCGCGATGAGCCGTGAGGAATTTGAGGCTCGGAAAACTAGTTTGAGGAGGAAGCATGAAAATGAGAGACGAGTTGAAAGGTAATTTGAAGCTTTATACTCCCTTTTCGTGAGAGAAAAATGTGGCAGGTTGGAGTGTGTTGTTCTGTGGGTGATCTTTGGACTCTTATTGGGTTCGATGTGTCTCTGTAGGCTTCATTGGCTAAGCCATTTTAAGCTGTTTTGAAAATATCCTTTCAATTGTATTAGCATTGTCCATACATATGCAGTTAATCTTGAAATTGTTGATATTATGATATATCAACTAAATTTATTGTGGAACATCTTGCAGCAGGGAGCGGGAGCCACCGAAAGATCGGGAGTTCGGAAGGGAAGTGAGCAGAGGCGGTGATGTCTCTTCAATGAAACAAAAATCTGTACGTCGTGTTCATATCTGTGCAGCACTTTTAATTTTGTTTTGAATTCTTTTATGCCATCAATTGGTCAGACATTAGTAAGTTAGCAGAGGATAAGACAAGTTTTCTTCACTAAATTCTTCATCTACCTGTAAGATAAAGTGATACATTGATTGATTTACTTTGGAGCACTGTAATTTGTACCAACTTTTGTATATTAATGTTGTGCTTTTGTTGTGTACACCTTATTCTATGAGTATTTTATCTGTTCCAAGAAGTATAACATGCAAGATAAAATCGAATTCCTTATCAACCTCCGATTTTTACTATAGGTTCGTGATTGCTTCTTAGGATATGAGATAACGAACCTCTTTTTATCGATGTATTATTATCGAGTAATTATCTTCAAACGTTTTGTCTTCTTCGTTGAGAAGAGATGCACAAAAGTTTACCCCTCTCAAATTGGTTGTCTGAACCCTCTCCTTTATCATGTGCAGAAGTTTGCACCTCAAACTTCAACTGGCGAACCAAACCAGATTCGTCGCCGACCTGAGAGCTCACCCGACACTGCAAGGAATGCTGAACCACCTTGCCCGCCCCCACGCAAAAGAAAGGCAGAGCACCTTGATCATGGTATTGAAAAGGATAACAATAATGATCGTTATGACCATGGTCACCATCGCCATCGTCAACATTCCGAGTCCCAAGCAGCCTCTGAAGTCTCGGCTAAATCTGCCACCAGTGCAGCTGCAGACCGCAAGCAGAAGACGAGCGTGTTTTCTCGCATTAGCTTCCAGGAGGAAGAGACAATGAAGAAACGGAAATTGCACCCTTCAAAGGAAGCACCACCAAGCGACTCTGGTTCTTCAGCAGCACATCACAAGGTATCATCCAGTGGACACTACGATGACTACAAGGCAAAGACAGTCACAACGGCGACTGCTCGTGGTAGGAGTAGAGCCGCTTCTGTTGATTGTGAGTCGAGCGACGACGATAGGCATTTCAAGAGAAAGCCATCCAGGTACGAGCCATCCCCTCCTCCACCATCAGACTGGGATCAGGGGGAGTCAAGACATCCCAGAGGCTCAACTAGAGAGCGGGAGCGGGAACGGGAACGAGAACGGGAGCGCAAGAGTAGTAGCTACAGCAAACATAGGTAGTATCTCGAGAGGATCATGAAGAACCAAGGCACCCCGAGAACGCAGCAGCCTCTGCAAATGTAGGGTAGTTCCATGGAGATGTGCCTTGCCACAGGTTTAAACAGAACCTATATCGCCCGGCTCCCGTCATCTTCCTAGCAGTAAAACGTCGAGAAACGCTGTCGAAAGCTCCAAATCCATTTGTGTATTGGGTTTAAAGTGAAAGTACAGGCATATGTGTTGAATGAGAAGCCATTGTTTTTGGGTTTCTTGCCGGATAAGACTGTCATAGAAGCTTGTACATTGTGTTCAAGCTTCTTCTTCTGTATTTGCTTGTCATAAATCTAATAATATACGAATGAAAATCACCACTCAGTTTCTTTTTATTCAGTCTGAATTTTAATTTAA

mRNA sequence

ATGTTGATTTACTCTTATGTTATTATAATTTGGATTGTAACTTATTATCTTTTCTTTTTTGATACAGTCAAGAAAAAGAAGAAGAAGAAAGTTCGCATGCCTGCAAATGACGTACAATGGAAAACTTCTCAAGATCTTGCAATGGAGAACTATATGATGCCCATGGGTGGCCCAACGCCATATAATAACCCATATTGGATGGGCGCACAACCTGGTTTTGACGGATACATGTCTTCATATGCTGCTCCAATGCCGTACATGGGTGGTTATGGGTTAGGTCCCTTGGACATGCCATTTGGACCTGTCATGCCTCAGGATCCATTTGCTATGCAAAATTACATGTTTCCTGTTGCTCCGCCTCAGAGGGATCTTGCGGACTTCGGCATGGGTATGAATATTGCACCTCCCGCGATGAGCCGTGAGGAATTTGAGGCTCGGAAAACTAGTTTGAGGAGGAAGCATGAAAATGAGAGACGAGTTGAAAGCAGGGAGCGGGAGCCACCGAAAGATCGGGAGTTCGGAAGGGAAGTGAGCAGAGGCGGTGATGTCTCTTCAATGAAACAAAAATCTAAGTTTGCACCTCAAACTTCAACTGGCGAACCAAACCAGATTCGTCGCCGACCTGAGAGCTCACCCGACACTGCAAGGAATGCTGAACCACCTTGCCCGCCCCCACGCAAAAGAAAGGCAGAGCACCTTGATCATGGTATTGAAAAGGATAACAATAATGATCGTTATGACCATGGTCACCATCGCCATCGTCAACATTCCGAGTCCCAAGCAGCCTCTGAAGTCTCGGCTAAATCTGCCACCAGTGCAGCTGCAGACCGCAAGCAGAAGACGAGCGTGTTTTCTCGCATTAGCTTCCAGGAGGAAGAGACAATGAAGAAACGGAAATTGCACCCTTCAAAGGAAGCACCACCAAGCGACTCTGGTTCTTCAGCAGCACATCACAAGGTATCATCCAGTGGACACTACGATGACTACAAGGCAAAGACAGTCACAACGGCGACTGCTCGTGGTAGGAGTAGAGCCGCTTCTGTTGATTGTGAGTCGAGCGACGACGATAGGCATTTCAAGAGAAAGCCATCCAGGTACGAGCCATCCCCTCCTCCACCATCAGACTGGGATCAGGGGGAGTCAAGACATCCCAGAGGCTCAACTAGAGAGCGGGAGCGGGAACGGGAACGAGAACGGGAGCGCAAGAGTAGTAGCTACAGCAAACATAGGTAGTATCTCGAGAGGATCATGAAGAACCAAGGCACCCCGAGAACGCAGCAGCCTCTGCAAATGTAGGTAAAACGTCGAGAAACGCTGTCGAAAGCTCCAAATCCATTTGTGTATTGGGTTTAAAGTGAAAGTACAGGCATATGTGTTGAATGAGAAGCCATTGTTTTTGGGTTTCTTGCCGGATAAGACTGTCATAGAAGCTTGTACATTGTGTTCAAGCTTCTTCTTCTGTATTTGCTTGTCATAAATCTAATAATATACGAATGAAAATCACCACTCAGTTTCTTTTTATTCAGTCTGAATTTTAATTTAA

Coding sequence (CDS)

ATGTTGATTTACTCTTATGTTATTATAATTTGGATTGTAACTTATTATCTTTTCTTTTTTGATACAGTCAAGAAAAAGAAGAAGAAGAAAGTTCGCATGCCTGCAAATGACGTACAATGGAAAACTTCTCAAGATCTTGCAATGGAGAACTATATGATGCCCATGGGTGGCCCAACGCCATATAATAACCCATATTGGATGGGCGCACAACCTGGTTTTGACGGATACATGTCTTCATATGCTGCTCCAATGCCGTACATGGGTGGTTATGGGTTAGGTCCCTTGGACATGCCATTTGGACCTGTCATGCCTCAGGATCCATTTGCTATGCAAAATTACATGTTTCCTGTTGCTCCGCCTCAGAGGGATCTTGCGGACTTCGGCATGGGTATGAATATTGCACCTCCCGCGATGAGCCGTGAGGAATTTGAGGCTCGGAAAACTAGTTTGAGGAGGAAGCATGAAAATGAGAGACGAGTTGAAAGCAGGGAGCGGGAGCCACCGAAAGATCGGGAGTTCGGAAGGGAAGTGAGCAGAGGCGGTGATGTCTCTTCAATGAAACAAAAATCTAAGTTTGCACCTCAAACTTCAACTGGCGAACCAAACCAGATTCGTCGCCGACCTGAGAGCTCACCCGACACTGCAAGGAATGCTGAACCACCTTGCCCGCCCCCACGCAAAAGAAAGGCAGAGCACCTTGATCATGGTATTGAAAAGGATAACAATAATGATCGTTATGACCATGGTCACCATCGCCATCGTCAACATTCCGAGTCCCAAGCAGCCTCTGAAGTCTCGGCTAAATCTGCCACCAGTGCAGCTGCAGACCGCAAGCAGAAGACGAGCGTGTTTTCTCGCATTAGCTTCCAGGAGGAAGAGACAATGAAGAAACGGAAATTGCACCCTTCAAAGGAAGCACCACCAAGCGACTCTGGTTCTTCAGCAGCACATCACAAGGTATCATCCAGTGGACACTACGATGACTACAAGGCAAAGACAGTCACAACGGCGACTGCTCGTGGTAGGAGTAGAGCCGCTTCTGTTGATTGTGAGTCGAGCGACGACGATAGGCATTTCAAGAGAAAGCCATCCAGGTACGAGCCATCCCCTCCTCCACCATCAGACTGGGATCAGGGGGAGTCAAGACATCCCAGAGGCTCAACTAGAGAGCGGGAGCGGGAACGGGAACGAGAACGGGAGCGCAAGAGTAGTAGCTACAGCAAACATAGGTAG

Protein sequence

MLIYSYVIIIWIVTYYLFFFDTVKKKKKKKVRMPANDVQWKTSQDLAMENYMMPMGGPTPYNNPYWMGAQPGFDGYMSSYAAPMPYMGGYGLGPLDMPFGPVMPQDPFAMQNYMFPVAPPQRDLADFGMGMNIAPPAMSREEFEARKTSLRRKHENERRVESREREPPKDREFGREVSRGGDVSSMKQKSKFAPQTSTGEPNQIRRRPESSPDTARNAEPPCPPPRKRKAEHLDHGIEKDNNNDRYDHGHHRHRQHSESQAASEVSAKSATSAAADRKQKTSVFSRISFQEEETMKKRKLHPSKEAPPSDSGSSAAHHKVSSSGHYDDYKAKTVTTATARGRSRAASVDCESSDDDRHFKRKPSRYEPSPPPPSDWDQGESRHPRGSTRERERERERERERKSSSYSKHR

Homology

[Close]

BLAST of Carg24859 vs. NCBI nr
Match: XP_022923325.1 (E3 ubiquitin ligase PQT3-like isoform X3 [Cucurbita moschata] >XP_022923326.1 E3 ubiquitin ligase PQT3-like isoform X4 [Cucurbita moschata])

HSP 1 Score: 430.3 bits (1105), Expect = 7.6e-117
Identity = 259/301 (86.05%), Postives = 259/301 (86.05%), Query Frame = 0


Query: 31  VRMPANDVQWKTSQDLAMENYMMPMGGPTPYNNPYWMGAQPGFDGYMSSYAAPMPYMGGY 90
           VRMPANDVQWKTSQDLAMENYMMPMGGPTPYNNPYWMGAQPGFDGYMSSYAAPMPYMGGY
Sbjct: 481 VRMPANDVQWKTSQDLAMENYMMPMGGPTPYNNPYWMGAQPGFDGYMSSYAAPMPYMGGY 540

Query: 91  GLGPLDMPFGPVMPQDPFAMQNYMFPVAPPQRDLADFGMGMNIAPPAMSREEFEARKTSL 150
           GLGPLDMPFGPVMPQDPFAMQNYMFPVAPPQRDLADFGMGMNIAPPAMSREEFEARKTSL
Sbjct: 541 GLGPLDMPFGPVMPQDPFAMQNYMFPVAPPQRDLADFGMGMNIAPPAMSREEFEARKTSL 600

Query: 151 RRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDVSSMKQKSKFAPQTSTGEPNQIRRRPES 210
           RR                             DVSSMKQKSKFAPQTSTGEPNQIRRRPES
Sbjct: 601 RRNHENERRVESREREPPKDREFGREVSRGSDVSSMKQKSKFAPQTSTGEPNQIRRRPES 660

Query: 211 SPDTARNAEPPCPPPRKRKAEHLDHGIEKDNXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 270
           SPDTARNAEPPCPPPRKRKAEHLDHGIEKDNXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 661 SPDTARNAEPPCPPPRKRKAEHLDHGIEKDNXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 720

Query: 271 XXXXXXRKQKTSVFSRISFQEEETMKKRKLHPSKEAXXXXXXXXXXXXXVSSSGHYDDYK 330
           XXXXXXRKQKTSVFSRISFQEEETMKKRKLHPSKEA             VSSSGHYDDYK
Sbjct: 721 XXXXXXRKQKTSVFSRISFQEEETMKKRKLHPSKEAPPSDSGASAAHHKVSSSGHYDDYK 780

Query: 331 A 332
           A
Sbjct: 781 A 781

[Close]

BLAST of Carg24859 vs. NCBI nr
Match: XP_022923322.1 (E3 ubiquitin ligase PQT3-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 430.3 bits (1105), Expect = 7.6e-117
Identity = 259/301 (86.05%), Postives = 259/301 (86.05%), Query Frame = 0


Query: 31  VRMPANDVQWKTSQDLAMENYMMPMGGPTPYNNPYWMGAQPGFDGYMSSYAAPMPYMGGY 90
           VRMPANDVQWKTSQDLAMENYMMPMGGPTPYNNPYWMGAQPGFDGYMSSYAAPMPYMGGY
Sbjct: 481 VRMPANDVQWKTSQDLAMENYMMPMGGPTPYNNPYWMGAQPGFDGYMSSYAAPMPYMGGY 540

Query: 91  GLGPLDMPFGPVMPQDPFAMQNYMFPVAPPQRDLADFGMGMNIAPPAMSREEFEARKTSL 150
           GLGPLDMPFGPVMPQDPFAMQNYMFPVAPPQRDLADFGMGMNIAPPAMSREEFEARKTSL
Sbjct: 541 GLGPLDMPFGPVMPQDPFAMQNYMFPVAPPQRDLADFGMGMNIAPPAMSREEFEARKTSL 600

Query: 151 RRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDVSSMKQKSKFAPQTSTGEPNQIRRRPES 210
           RR                             DVSSMKQKSKFAPQTSTGEPNQIRRRPES
Sbjct: 601 RRNHENERRVESREREPPKDREFGREVSRGSDVSSMKQKSKFAPQTSTGEPNQIRRRPES 660

Query: 211 SPDTARNAEPPCPPPRKRKAEHLDHGIEKDNXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 270
           SPDTARNAEPPCPPPRKRKAEHLDHGIEKDNXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 661 SPDTARNAEPPCPPPRKRKAEHLDHGIEKDNXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 720

Query: 271 XXXXXXRKQKTSVFSRISFQEEETMKKRKLHPSKEAXXXXXXXXXXXXXVSSSGHYDDYK 330
           XXXXXXRKQKTSVFSRISFQEEETMKKRKLHPSKEA             VSSSGHYDDYK
Sbjct: 721 XXXXXXRKQKTSVFSRISFQEEETMKKRKLHPSKEAPPSDSGASAAHHKVSSSGHYDDYK 780

Query: 331 A 332
           A
Sbjct: 781 A 781

[Close]

BLAST of Carg24859 vs. NCBI nr
Match: XP_022923324.1 (E3 ubiquitin ligase PQT3-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 417.5 bits (1072), Expect = 5.1e-113
Identity = 279/301 (92.69%), Postives = 279/301 (92.69%), Query Frame = 0


Query: 31  VRMPANDVQWKTSQDLAMENYMMPMGGPTPYNNPYWMGAQPGFDGYMSSYAAPMPYMGGY 90
           VRMPANDVQWKTSQDLAMENYMMPMGGPTPYNNPYWMGAQPGFDGYMSSYAAPMPYMGGY
Sbjct: 481 VRMPANDVQWKTSQDLAMENYMMPMGGPTPYNNPYWMGAQPGFDGYMSSYAAPMPYMGGY 540

Query: 91  GLGPLDMPFGPVMPQDPFAMQNYMFPVAPPQRDLADFGMGMNIAPPAMSREEFEARKTSL 150
           GLGPLDMPFGPVMPQDPFAMQNYMFPVAPPQRDLADFGMGMNIAPPAMSREEFEARKTSL
Sbjct: 541 GLGPLDMPFGPVMPQDPFAMQNYMFPVAPPQRDLADFGMGMNIAPPAMSREEFEARKTSL 600

Query: 151 RRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDVSSMKQKSKFAPQTSTGEPNQIRRRPES 210
           RR     XXXXXXXXXXXXXXXXXXXXXXXX    MKQKSKFAPQTSTGEPNQIRRRPES
Sbjct: 601 RR-NHENXXXXXXXXXXXXXXXXXXXXXXXXXXXXMKQKSKFAPQTSTGEPNQIRRRPES 660

Query: 211 SPDTARNAEPPCPPPRKRKAEHLDHGIEKDNXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 270
           SPDTARNAEPPCPPPRKRKAEHLDHGIEKDNXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 661 SPDTARNAEPPCPPPRKRKAEHLDHGIEKDNXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 720

Query: 271 XXXXXXRKQKTSVFSRISFQEEETMKKRKLHPSKEAXXXXXXXXXXXXXVSSSGHYDDYK 330
           XXXXXXRKQKTSVFSRISFQEEETMKKRKLHPSKEA             VSSSGHYDDYK
Sbjct: 721 XXXXXXRKQKTSVFSRISFQEEETMKKRKLHPSKEAPPSDSGASAAHHKVSSSGHYDDYK 780

Query: 331 A 332
           A
Sbjct: 781 A 780

[Close]

BLAST of Carg24859 vs. NCBI nr
Match: XP_023552395.1 (E3 ubiquitin ligase PQT3-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 416.4 bits (1069), Expect = 1.1e-112
Identity = 282/301 (93.69%), Postives = 282/301 (93.69%), Query Frame = 0


Query: 31  VRMPANDVQWKTSQDLAMENYMMPMGGPTPYNNPYWMGAQPGFDGYMSSYAAPMPYMGGY 90
           VRMPANDVQWKTSQDLAMENYMMPMGGPTPYNNPYWMGAQPGFDGYMSSYAAPMPYMGGY
Sbjct: 481 VRMPANDVQWKTSQDLAMENYMMPMGGPTPYNNPYWMGAQPGFDGYMSSYAAPMPYMGGY 540

Query: 91  GLGPLDMPFGPVMPQDPFAMQNYMFPVAPPQRDLADFGMGMNIAPPAMSREEFEARKTSL 150
           GLGPLDMPFGPVMPQDPFAMQNYMFPVAPPQRDLADFGMGMNIAPPAMSREEFEARK SL
Sbjct: 541 GLGPLDMPFGPVMPQDPFAMQNYMFPVAPPQRDLADFGMGMNIAPPAMSREEFEARKASL 600

Query: 151 RRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDVSSMKQKSKFAPQTSTGEPNQIRRRPES 210
           RRXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  SSMKQKSKFAPQTSTGEPNQ RRRPES
Sbjct: 601 RRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSMKQKSKFAPQTSTGEPNQTRRRPES 660

Query: 211 SPDTARNAEPPCPPPRKRKAEHLDHGIEKDNXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 270
           SPDTARNA PPCPPPRKRKAEHLDHGIEKDNXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 661 SPDTARNAGPPCPPPRKRKAEHLDHGIEKDNXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 720

Query: 271 XXXXXXRKQKTSVFSRISFQEEETMKKRKLHPSKEAXXXXXXXXXXXXXVSSSGHYDDYK 330
           XXXXXXRKQKTSVFSRISF EEETMKKRKLHPSKEA             VSSSGHYDDYK
Sbjct: 721 XXXXXXRKQKTSVFSRISFLEEETMKKRKLHPSKEAPPSDSGASAAHHKVSSSGHYDDYK 780

Query: 331 A 332
           A
Sbjct: 781 A 781

[Close]

BLAST of Carg24859 vs. NCBI nr
Match: XP_023007692.1 (E3 ubiquitin ligase PQT3-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 412.5 bits (1059), Expect = 1.6e-111
Identity = 282/301 (93.69%), Postives = 283/301 (94.02%), Query Frame = 0


Query: 31  VRMPANDVQWKTSQDLAMENYMMPMGGPTPYNNPYWMGAQPGFDGYMSSYAAPMPYMGGY 90
           VRMPANDVQWKTSQDLAMENYMMPMGGPTPY NPYWMGAQPGFDGYMSSYAAPMPYMGGY
Sbjct: 481 VRMPANDVQWKTSQDLAMENYMMPMGGPTPY-NPYWMGAQPGFDGYMSSYAAPMPYMGGY 540

Query: 91  GLGPLDMPFGPVMPQDPFAMQNYMFPVAPPQRDLADFGMGMNIAPPAMSREEFEARKTSL 150
           GLGPLDMPFGPVMPQDPFAMQNYM PVAPPQRDLA+FGMGMNIAPPAMSREEFEARK SL
Sbjct: 541 GLGPLDMPFGPVMPQDPFAMQNYMLPVAPPQRDLANFGMGMNIAPPAMSREEFEARKASL 600

Query: 151 RRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDVSSMKQKSKFAPQTSTGEPNQIRRRPES 210
           RRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDVSSMKQKSKFAPQTSTGEPNQIR RPES
Sbjct: 601 RRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDVSSMKQKSKFAPQTSTGEPNQIRHRPES 660

Query: 211 SPDTARNAEPPCPPPRKRKAEHLDHGIEKDNXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 270
           SPDTARNA PPCPPPRKRKAEHLDHGIEKDNXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 661 SPDTARNAGPPCPPPRKRKAEHLDHGIEKDNXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 720

Query: 271 XXXXXXRKQKTSVFSRISFQEEETMKKRKLHPSKEAXXXXXXXXXXXXXVSSSGHYDDYK 330
           XXXXXXRKQKTSVFSRISFQEEETMKKRKLHPSKEA             VSSSGHYDDYK
Sbjct: 721 XXXXXXRKQKTSVFSRISFQEEETMKKRKLHPSKEAPPSDSGASAAHHKVSSSGHYDDYK 780

Query: 331 A 332
           A
Sbjct: 781 A 780

[Close]

BLAST of Carg24859 vs. TAIR10
Match: AT5G47430.1 (DWNN domain, a CCHC-type zinc finger)

HSP 1 Score: 66.6 bits (161), Expect = 4.0e-11
Identity = 51/146 (34.93%), Postives = 63/146 (43.15%), Query Frame = 0


Query: 32  RMPANDVQWKTSQDLAMENYMMPMGGPTPYNNPYWMGAQP-------------------- 91
           R+P ND+QW    DLA  +YMM M GP P    Y+ G QP                    
Sbjct: 484 RVPGNDMQWNPVPDLAGPDYMMQM-GPGP---QYFNGMQPXXXXXXXXXXXXXXXXXXXX 543

Query: 92  -GFDGYMSSYAAPMPYMGGYGLGPLDMPFG---PVMPQDPFAMQNYMFP-VAPPQRDLAD 151
                              YGL P+DM FG    +M  DPF  Q + FP + PP RDLA+
Sbjct: 544 XXXXXXXXXXXXXXXXXXXYGLNPMDMGFGGGMNMMHPDPFMAQGFGFPNIPPPHRDLAE 603

Query: 152 FGMGMNIAPPAMSREEFEARKTSLRR 153
            G  MN+    M R+E EAR   + R
Sbjct: 604 MGNRMNLQRAMMGRDEAEARNAEMLR 625

[Close]

BLAST of Carg24859 vs. TAIR10
Match: AT4G17410.3 (DWNN domain, a CCHC-type zinc finger)

HSP 1 Score: 61.2 bits (147), Expect = 1.7e-09
Identity = 46/123 (37.40%), Postives = 56/123 (45.53%), Query Frame = 0


Query: 45  DLAMENYMMPMGGPTPYNNPYWMGAQPGFDGYMSSYAAPMPYMGGYGLGPLDMP------ 104
           DLA  +YMMPM GP P  N Y+ G QP                                 
Sbjct: 483 DLAGPDYMMPM-GPGP-GNQYFNGFQPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 542

Query: 105 --------FGPVMPQDPFAMQNYMFP-VAPPQRDLADFGMGMNIAPPAMSREEFEARKTS 153
                   FG V+  DPFA Q + FP + PP RDLA+ G  MN+  P M REEFEA+KT 
Sbjct: 543 XXXXXXYGFGGVIHPDPFAAQGFGFPNIPPPYRDLAEMGNRMNLQHPIMGREEFEAKKTE 602

[Close]

BLAST of Carg24859 vs. Swiss-Prot
Match: sp|B9DFV2|PQT3L_ARATH (E3 ubiquitin ligase PQT3-like OS=Arabidopsis thaliana OX=3702 GN=At5g47430 PE=1 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 7.2e-10
Identity = 51/146 (34.93%), Postives = 63/146 (43.15%), Query Frame = 0


Query: 32  RMPANDVQWKTSQDLAMENYMMPMGGPTPYNNPYWMGAQP-------------------- 91
           R+P ND+QW    DLA  +YMM M GP P    Y+ G QP                    
Sbjct: 484 RVPGNDMQWNPVPDLAGPDYMMQM-GPGP---QYFNGMQPXXXXXXXXXXXXXXXXXXXX 543

Query: 92  -GFDGYMSSYAAPMPYMGGYGLGPLDMPFG---PVMPQDPFAMQNYMFP-VAPPQRDLAD 151
                              YGL P+DM FG    +M  DPF  Q + FP + PP RDLA+
Sbjct: 544 XXXXXXXXXXXXXXXXXXXYGLNPMDMGFGGGMNMMHPDPFMAQGFGFPNIPPPHRDLAE 603

Query: 152 FGMGMNIAPPAMSREEFEARKTSLRR 153
            G  MN+    M R+E EAR   + R
Sbjct: 604 MGNRMNLQRAMMGRDEAEARNAEMLR 625

[Close]

BLAST of Carg24859 vs. Swiss-Prot
Match: sp|F4JP52|PQT3_ARATH (E3 ubiquitin ligase PARAQUAT TOLERANCE 3 OS=Arabidopsis thaliana OX=3702 GN=PQT3 PE=1 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 3.0e-08
Identity = 46/123 (37.40%), Postives = 56/123 (45.53%), Query Frame = 0


Query: 45  DLAMENYMMPMGGPTPYNNPYWMGAQPGFDGYMSSYAAPMPYMGGYGLGPLDMP------ 104
           DLA  +YMMPM GP P  N Y+ G QP                                 
Sbjct: 482 DLAGPDYMMPM-GPGP-GNQYFNGFQPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 541

Query: 105 --------FGPVMPQDPFAMQNYMFP-VAPPQRDLADFGMGMNIAPPAMSREEFEARKTS 153
                   FG V+  DPFA Q + FP + PP RDLA+ G  MN+  P M REEFEA+KT 
Sbjct: 542 XXXXXXYGFGGVIHPDPFAAQGFGFPNIPPPYRDLAEMGNRMNLQHPIMGREEFEAKKTE 601

[Close]

BLAST of Carg24859 vs. TrEMBL
Match: tr|A0A1S3BK09|A0A1S3BK09_CUCME (E3 ubiquitin-protein ligase RBBP6-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103490875 PE=4 SV=1)

HSP 1 Score: 263.5 bits (672), Expect = 8.1e-67
Identity = 140/192 (72.92%), Postives = 141/192 (73.44%), Query Frame = 0


Query: 35  ANDVQWKTSQDLAMENYMMPMGGPTPYNNPYWMGAQPGFDGYMS--SYAAPMPYMGGYGL 94
           AND QWKTSQDLA ENYMMPMGGP PY NPYW G Q GFDGYM+  SYAAPMPYMGGYGL
Sbjct: 486 ANDFQWKTSQDLATENYMMPMGGPAPY-NPYWTGMQSGFDGYMNMPSYAAPMPYMGGYGL 545

Query: 95  GPLDMPFGPVMPQDPFAMQNYMFPVAPPQRDLADFGMGMNIAPPAMSREEFEARKTSL-- 154
           GPLDMPFGPVMPQDPFAMQNYMFPVAPPQRDLADFGMGMNIAPPAMSREEFEARK  L  
Sbjct: 546 GPLDMPFGPVMPQDPFAMQNYMFPVAPPQRDLADFGMGMNIAPPAMSREEFEARKAGLNM 605

Query: 155 RRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDVSSMKQKSKFAPQTSTGEPNQIRRRPES 214
           RR                             D  SMKQKSKFAPQTST E N  RRRPES
Sbjct: 606 RRKHENERRVESREREPPKDREFGREVCTSGDGPSMKQKSKFAPQTSTSEHNPNRRRPES 665

Query: 215 SPDTARNAEPPC 223
           SPD ARN  PPC
Sbjct: 666 SPDGARNVGPPC 676

[Close]

BLAST of Carg24859 vs. TrEMBL
Match: tr|A0A1S3BKM0|A0A1S3BKM0_CUCME (E3 ubiquitin-protein ligase RBBP6-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103490875 PE=4 SV=1)

HSP 1 Score: 261.9 bits (668), Expect = 2.4e-66
Identity = 139/191 (72.77%), Postives = 140/191 (73.30%), Query Frame = 0


Query: 35  ANDVQWKTSQDLAMENYMMPMGGPTPYNNPYWMGAQPGFDGYMS--SYAAPMPYMGGYGL 94
           AND QWKTSQDLA ENYMMPMGGP PY NPYW G Q GFDGYM+  SYAAPMPYMGGYGL
Sbjct: 486 ANDFQWKTSQDLATENYMMPMGGPAPY-NPYWTGMQSGFDGYMNMPSYAAPMPYMGGYGL 545

Query: 95  GPLDMPFGPVMPQDPFAMQNYMFPVAPPQRDLADFGMGMNIAPPAMSREEFEARKTSLR- 154
           GPLDMPFGPVMPQDPFAMQNYMFPVAPPQRDLADFGMGMNIAPPAMSREEFEARK  L  
Sbjct: 546 GPLDMPFGPVMPQDPFAMQNYMFPVAPPQRDLADFGMGMNIAPPAMSREEFEARKAGLNM 605

Query: 155 RXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDVSSMKQKSKFAPQTSTGEPNQIRRRPESS 214
           R                             D  SMKQKSKFAPQTST E N  RRRPESS
Sbjct: 606 RRKHENERRVEREREPPKDREFGREVCTSGDGPSMKQKSKFAPQTSTSEHNPNRRRPESS 665

Query: 215 PDTARNAEPPC 223
           PD ARN  PPC
Sbjct: 666 PDGARNVGPPC 675

[Close]

BLAST of Carg24859 vs. TrEMBL
Match: tr|A0A0A0L6U2|A0A0A0L6U2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G019910 PE=4 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 1.1e-63
Identity = 136/191 (71.20%), Postives = 138/191 (72.25%), Query Frame = 0


Query: 35  ANDVQWKTSQDLAMENYMMPMGGPTPYNNPYWMGAQPGFDGYMS--SYAAPMPYMGGYGL 94
           AND QWKTSQDLA ENYMMPMGGP PY NPYW G Q GFDGYM+  SYAAPMPYMGGYGL
Sbjct: 486 ANDFQWKTSQDLATENYMMPMGGPAPY-NPYWTGMQSGFDGYMNMPSYAAPMPYMGGYGL 545

Query: 95  GPLDMPFGPVMPQDPFAMQNYMFPVAPPQRDLADFGMGMNIAPPAMSREEFEARKT--SL 154
           GPLDMPFGPVMPQDPFAMQNYMFPVAPPQRDLADFGMGMNIAP AMSREEFEARK   +L
Sbjct: 546 GPLDMPFGPVMPQDPFAMQNYMFPVAPPQRDLADFGMGMNIAPHAMSREEFEARKAGLNL 605

Query: 155 RRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDVSSMKQKSKFAPQTSTGEPNQIRRRPES 214
           RR                             D  SMKQKSKFAPQTS  E N  RRRPES
Sbjct: 606 RRKHENERRVESREREPPKDREFGREVCTGGDGPSMKQKSKFAPQTSNSEHNPNRRRPES 665

Query: 215 SPDTARNAEPP 222
           SPD  RN  PP
Sbjct: 666 SPDVPRNIGPP 675

[Close]

BLAST of Carg24859 vs. TrEMBL
Match: tr|A0A1U8HH04|A0A1U8HH04_GOSHI (uncharacterized protein LOC107886064 isoform X2 OS=Gossypium hirsutum OX=3635 GN=LOC107886064 PE=4 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 1.0e-45
Identity = 110/204 (53.92%), Postives = 126/204 (61.76%), Query Frame = 0


Query: 31  VRMPANDVQWKTSQDLAMENYMMPMGGPTPYNNPYWMGAQPGFDGYMSSYAAPMPYMGGY 90
           VR+P ND+QWK  QDLA ENYMM M GP+ Y NPYW G QPG DG+M  Y   MPYMGGY
Sbjct: 481 VRLPGNDLQWKAPQDLAAENYMMSM-GPSAY-NPYWTGMQPGMDGFMGPYGGAMPYMGGY 540

Query: 91  GLGPLDMPFGPVMPQDPFAMQNYMFPVAPPQRDLADFGMGMNIAPPAMSREEFEARKTSL 150
           GL P DMPFG VMP D F  QNYMFP  PPQRDLA+FGMGMN+APP MSREEFEAR+ +L
Sbjct: 541 GLSPFDMPFGGVMPPDAFGAQNYMFPPVPPQRDLAEFGMGMNVAPPIMSREEFEARQAAL 600

Query: 151 RRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDVSSMKQKSKFAPQTSTGE--PNQIRRRP 210
           RR                             DVSS+K KSK  PQ S G+   + +R R 
Sbjct: 601 RR--KRENERRSEREFSTRDREFVREVSNSADVSSLKSKSKPIPQMSGGDRRSDHLRHRS 660

Query: 211 E-SSPDTARNAEPPCPPPRKRKAE 232
           E +SP+ +       P P KRKA+
Sbjct: 661 ERTSPERSLQDHEAPPRPAKRKAD 680

[Close]

BLAST of Carg24859 vs. TrEMBL
Match: tr|A0A1U8HH25|A0A1U8HH25_GOSHI (uncharacterized protein LOC107886064 isoform X1 OS=Gossypium hirsutum OX=3635 GN=LOC107886064 PE=4 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 1.0e-45
Identity = 110/204 (53.92%), Postives = 126/204 (61.76%), Query Frame = 0


Query: 31  VRMPANDVQWKTSQDLAMENYMMPMGGPTPYNNPYWMGAQPGFDGYMSSYAAPMPYMGGY 90
           VR+P ND+QWK  QDLA ENYMM M GP+ Y NPYW G QPG DG+M  Y   MPYMGGY
Sbjct: 484 VRLPGNDLQWKAPQDLAAENYMMSM-GPSAY-NPYWTGMQPGMDGFMGPYGGAMPYMGGY 543

Query: 91  GLGPLDMPFGPVMPQDPFAMQNYMFPVAPPQRDLADFGMGMNIAPPAMSREEFEARKTSL 150
           GL P DMPFG VMP D F  QNYMFP  PPQRDLA+FGMGMN+APP MSREEFEAR+ +L
Sbjct: 544 GLSPFDMPFGGVMPPDAFGAQNYMFPPVPPQRDLAEFGMGMNVAPPIMSREEFEARQAAL 603

Query: 151 RRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDVSSMKQKSKFAPQTSTGE--PNQIRRRP 210
           RR                             DVSS+K KSK  PQ S G+   + +R R 
Sbjct: 604 RR--KRENERRSEREFSTRDREFVREVSNSADVSSLKSKSKPIPQMSGGDRRSDHLRHRS 663

Query: 211 E-SSPDTARNAEPPCPPPRKRKAE 232
           E +SP+ +       P P KRKA+
Sbjct: 664 ERTSPERSLQDHEAPPRPAKRKAD 683

The following BLAST results are available for this feature:

BLAST of Carg24859 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022923325.1	7.6e-117	86.05	E3 ubiquitin ligase PQT3-like isoform X3 [Cucurbita moschata] >XP_022923326.1 E3...	[more]
XP_022923322.1	7.6e-117	86.05	E3 ubiquitin ligase PQT3-like isoform X1 [Cucurbita moschata]	[more]
XP_022923324.1	5.1e-113	92.69	E3 ubiquitin ligase PQT3-like isoform X2 [Cucurbita moschata]	[more]
XP_023552395.1	1.1e-112	93.69	E3 ubiquitin ligase PQT3-like isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_023007692.1	1.6e-111	93.69	E3 ubiquitin ligase PQT3-like isoform X1 [Cucurbita maxima]	[more]

BLAST of Carg24859 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G47430.1	4.0e-11	34.93	DWNN domain, a CCHC-type zinc finger	[more]
AT4G17410.3	1.7e-09	37.40	DWNN domain, a CCHC-type zinc finger	[more]

BLAST of Carg24859 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|B9DFV2\|PQT3L_ARATH	7.2e-10	34.93	E3 ubiquitin ligase PQT3-like OS=Arabidopsis thaliana OX=3702 GN=At5g47430 PE=1 ...	[more]
sp\|F4JP52\|PQT3_ARATH	3.0e-08	37.40	E3 ubiquitin ligase PARAQUAT TOLERANCE 3 OS=Arabidopsis thaliana OX=3702 GN=PQT3...	[more]

BLAST of Carg24859 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BK09\|A0A1S3BK09_CUCME	8.1e-67	72.92	E3 ubiquitin-protein ligase RBBP6-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC...	[more]
tr\|A0A1S3BKM0\|A0A1S3BKM0_CUCME	2.4e-66	72.77	E3 ubiquitin-protein ligase RBBP6-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC...	[more]
tr\|A0A0A0L6U2\|A0A0A0L6U2_CUCSA	1.1e-63	71.20	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G019910 PE=4 SV=1	[more]
tr\|A0A1U8HH04\|A0A1U8HH04_GOSHI	1.0e-45	53.92	uncharacterized protein LOC107886064 isoform X2 OS=Gossypium hirsutum OX=3635 GN...	[more]
tr\|A0A1U8HH25\|A0A1U8HH25_GOSHI	1.0e-45	53.92	uncharacterized protein LOC107886064 isoform X1 OS=Gossypium hirsutum OX=3635 GN...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg24859-RA	Carg24859-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 140..160
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 222..259
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 183..205
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 260..289
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 347..365
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 138..410
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 378..403
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 140..178
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 290..305

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg24859	Silver-seed gourd	carcarB434
Carg24859	Cucumber (Gy14) v2	carcgybB0424
Carg24859	Cucumber (Gy14) v1	carcgyB0483
Carg24859	Cucurbita maxima (Rimu)	carcmaB0579
Carg24859	Cucurbita maxima (Rimu)	carcmaB0580
Carg24859	Cucurbita moschata (Rifu)	carcmoB0563
Carg24859	Cucurbita moschata (Rifu)	carcmoB0564
Carg24859	Cucurbita pepo (Zucchini)	carcpeB0585
Carg24859	Cucurbita pepo (Zucchini)	carcpeB0586
Carg24859	Wild cucumber (PI 183967)	carcpiB0453
Carg24859	Cucumber (Chinese Long) v2	carcuB0448
Carg24859	Cucumber (Chinese Long) v3	carcucB0449
Carg24859	Bottle gourd (USVL1VR-Ls)	carlsiB379
Carg24859	Melon (DHL92) v3.5.1	carmeB0424
Carg24859	Melon (DHL92) v3.6.1	carmedB0427
Carg24859	Watermelon (Charleston Gray)	carwcgB0410
Carg24859	Watermelon (97103) v1	carwmB0414
Carg24859	Watermelon (97103) v2	carwmbB0440
Carg24859	Wax gourd	carwgoB0502