Carg24763-RA (mRNA) Silver-seed gourd
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CGTTTCTTTTTTTGTTTCACTCGCCGGAGCAAAAATGCTCTCTGGGTTCTCACAGGAACCGGCAGGAATGTACTCTGCCATTCCGGCGCTGCCGATGGACGGCGGAGGCGGCGGCGGCGGCGGCAAGTTTCTGGGTTCTCTAGACGGAACGAATCTTCCTGGAGATGCTTGTTTGGTTCTCACGTCGGATCCCAAACCACGCCTCCGATGGACGGCGGAGCTCCATGAGCGATTCGTCGACGCCGTCACTCAGCTCGGTGGCTCCGACAGTGAGTGCAGCTTTTTTCCCTTTTTTCTTTTGTTTGCTTTCTAATTGCTTCTCTCTGGAATTTGGGCTCTGTTTTAATGGTTGTGTCACTTAATGCTGGCTTGAAGTGGGAGGAGGTGTTCTTATATCTATCTGGTGTCACAATCGCACTTTTAATGGTAGCGAACTTGCGATTGTGCGGCACTCACTTTCCAAGGACAAGTGAGCTAAGCCAATTCGTTCTTGTATGGCCTACGGCCAAACGACGTATGCTCGAACCTCTGGCCTCGGTTTTAAGAGAAGGTTTTAGAAAACGAGCGCAGAGAGAGATGTTCGAAAGAGAGATTTTTGAAACAAACGTTATATAAGCAAGCAAGAGAGAAATAACAACGGCTTACAGTATATAACATTGAGTAGGGAGAAATTGACATGCATTGTCCTCCTCGATCGCATCATGGCAGTCTTCTATATTGGCCCGCATATGGCTAGATGGGCGTCTTTTGAGGGACGCCACTTTACTTGTCATGGGGTGAGGGTCACAACCTACTCTCTCCATAGTATGGTTGTAACATTCTCCCTCACTTAACTTAGTCATCGTCCTAGATGACTTACTCGGGTCACAATCATACTGCATATTGTGACATTTGGCTCATGCGGGTCGGTACTCTTATTGGTTAAATTTCAACATTTGTAACGGTTTGATCATGAACGGTAGAAATGATTGAATTTGCTATTAAACTCGTAAAAAGAGTAGTGTAACGGTTTTTGTTCATATTGGTTTCACTACGATCCACTTTTCTATTAAATGCAATAGAAATAGACCATGTCGACGAGTTAGTTCGACGTCCTACCGATGGGTATGCAAGCAAGTATCGTCCTTTTTTTAGGGTAGAGTGTCCTTGAGGGAGATGTGGCCTACAACTAGATTCATGTCTATTGATTTGGTGTCCTTGAAGTTTCTTTCATTTAAGACGAGCTGAGTTAAGTTAGGTTTCTGATTGCTCCCTTGAAGTGTTGGGCATGGAAAAGAAGTAAGTGTGCACCTAGATGAAAAGAAAAACGTTTCCGGCCCCGGGGTATCCCAACACGGAGAGTTTGCCATATATCGGGGTGGAAGATGGAATCAGGTCGGTGAGGGCCGCGAGAGCGGTACCAAATCGAGGCAGGTGAGCGAATAAGGATTGAAACCCAATATGAAAACACTTCCGCTCATGGCTGGACTGGAAAAAGATGTGGGAGTAATGTCACTTGAGTTAGGGGCCTTTTTTTGCAGGATGCCAGGTGTGTAGGAACGCCCAAACGGGTTCGGTTATATAACCATTCTATATATGGCTAAGATGCAAGCTTTAGCACTAAGAAATGATTGCGTTGCTGAATAGAACGATTTGTATCGGTTTCTTGTTCGATTATTATGTTTTAATACGTGCTAGAGAGTAAACTCGTCGAGTTCGGAGCCATGGTGTCGTCTTGGTTGCTCTTTCTATAGAGTTGTATGATACTTTCTCTTATTTGATTTGTTCCTAATGGTCAAAATGCTGATATTGGTTTCTCTACACTTTTCAGAGGCAACCCCAAAAACAATTATGAGAACAATGGGAGTAAAAGGCCTCACCCTTTATCACTTAAAATCACACCTCCAGGTTTGTTCATATCGCCGTTATACCGACCGGGCCGAGCCCGACACTCATCTTGTCTTGTTCTATTGTTTGTTCGACAATTTATGTTTTCTTGATGCCTTGTGCTAGCAGAAATATCGGCTCGGGAAGCAATCGTTCAAGGAATCGACGGAGAACTCGAAGGATGGTACGAACTTCCTCTTCAAAACAGTTGGGACTTGGCAGTTTCCTTTTCTTGTTTTGTATGGAATGAAGTAGCAAATAGTTCAAACTGTGGGGCATGCTTACTCATTTTTATCTAGAGAATTATACATCGACGTACCCGAACCACCGGTTTCGGTTTTTTGCTATATATCGTTTGTGTGTGAAGCTTAAACGACTCATAGATATGGCTTTTCAGCTTCTTGCATTGCAGAAAGTCAAGAAACAAGTTCGTCATCATCACCATCGTCAAAAATAGTAGCTCGAGATTTGAACGAGTATGGTCGACTTTTTCGTTTTACGTAATGGTTTTCCATGCTCTATATATGTCTTGCATTGAGTAGTTTTGTTTTTTGAACAGTAGTTTCCAAGTCACTGAGGCGTTACGAGCACAGATGGAGGTTCAAAGAAGGCTGCACGAGCAGCTCGAGGTTAGTCAGTCGTTCGTTCATTCTTCGTGAAGGAACTTGAATTTGTATCGGCCCAGACCCACCACTAGTAGATATTGTCCTCCTTGGGCTTTCTCTTTCAGGCTTCCCCTCAAGGTTTTTAAAACGTGTTTGCTAGGGAGAGACTTTCACACCCTTCTAAAGGGTGTTTCGTTCTCTTCGCCAACCGATGTGAGATCTCACAATCCACCCCCCTTCAGGGTCCAACGTCCTCGCTGGCACTTGTTCCTTTCTTCAATTGATGTGGGACCCCCGCCAACTCCACCCTCCTTCGGGGCCCCAGCGTCCTTGTTGTTACACCGCCCGTGTCTATCCCCCTTCGGAGAACAACCTCCTCACTGGCACATCGTTCAGTGTCTGACTTTGATACCATTTGAAACACCTCAGGCCCACTGCTAGCAGATATTGTCCTCTTTGGGTTTTCTCTTTCGAGCTTCTCCTAAAGGTTTTTAAAACGCGTCTGATAGGGAGAGGTTTCCACACTCTGGTGTTTCATTCTCCTCCCAAACCGATGTGGAGTTTCACAATCCACCTCCTTCAAGGCCCAACGTCCTCACCGGCACTTGTTCCTTTCTTCAATCAATGTGGGACCCCCACCAACTCCACCCTCCTTCGGGGCCCCAGTGTCTTTGCTGGCACACCACCCGTGTCTACCCCCTTCGGGGAACAACCTCCTCGCTGGCACATTGCTTGGTGTCTGGCATTGATACCATTTGTAACAGCCCAAGCCCACCGCTAGTAGATATTGTCCTCTTTAGGCTTTCCCTTTCGGGTTTCCTCTCAAAGTTTTTAAAACGTGTCCGCTAGGGAGAGGTTTCCACACTCTTATAAAGAATGTTCATTCTCCTTCCCAATCGACGTGGAATCTCACCGAATCTATTGCTATAAATCTTGAGAAAACTCACTGTTTTCCATTTTCAAGTCCATGCTTCTTTTACTTTAAACGCAGGTGCAGCGTCGACTTCAACTTCGCATTGAAGCACAAGGAAAATACTTGCAGTCGATACTCGAGCGGGCGTGTCGAGCATTAAGCGATCAGGCTGCAGCATCTGCTGGACTCGAAGCTGCACGAGAAGAGCTCTCTGAACTTGCAATGAAAGTAGCCAATGAGTCTAAAGAGATAGCACCATTGGAGACTCAAAAAGTGCTTCCCTTTTCAGAACTTGCTGCTGCTCTAGAAAATCCCAAGGCTCCTACGGTTATGCCTCGAGTAGGCGATTGCTCGATGGATAGCTGCTTGACATCAGCTGGAAGCCCGGTTTCCCCGATCGGAGTAGGATCAACTACCACCGGAATGAAGAGACCGAGACCAGTTTTTAGTCATGGAGATTCGATGGCGCTCGAGGGCAATGCTCGACACGACGTCGAATGGATGATGAGATGAAAATTAGGACTTTGCCTTAAAACGTACAGCCTTTTCTTCTGAGCTACTTGCTCTCTTGTTCACTTCTGTAATGAAAGTATTATACAATCTGTTTTGTGGCTTGTAAATTCTTCATAATCAGACGCTTTTGGCCTCTTTGATCTTCATTTACATAACATAACATGGAGGGCAAAATGGTAAATTTCAAAAGTTATTCTTGCATTA CGTTTCTTTTTTTGTTTCACTCGCCGGAGCAAAAATGCTCTCTGGGTTCTCACAGGAACCGGCAGGAATGTACTCTGCCATTCCGGCGCTGCCGATGGACGGCGGAGGCGGCGGCGGCGGCGGCAAGTTTCTGGGTTCTCTAGACGGAACGAATCTTCCTGGAGATGCTTGTTTGGTTCTCACGTCGGATCCCAAACCACGCCTCCGATGGACGGCGGAGCTCCATGAGCGATTCGTCGACGCCGTCACTCAGCTCGGTGGCTCCGACAAGGCAACCCCAAAAACAATTATGAGAACAATGGGAGTAAAAGGCCTCACCCTTTATCACTTAAAATCACACCTCCAGAAATATCGGCTCGGGAAGCAATCGTTCAAGGAATCGACGGAGAACTCGAAGGATGCTTCTTGCATTGCAGAAAGTCAAGAAACAAGTTCGTCATCATCACCATCGTCAAAAATAGTAGCTCGAGATTTGAACGATAGTTTCCAAGTCACTGAGGCGTTACGAGCACAGATGGAGGTTCAAAGAAGGCTGCACGAGCAGCTCGAGGTGCAGCGTCGACTTCAACTTCGCATTGAAGCACAAGGAAAATACTTGCAGTCGATACTCGAGCGGGCGTGTCGAGCATTAAGCGATCAGGCTGCAGCATCTGCTGGACTCGAAGCTGCACGAGAAGAGCTCTCTGAACTTGCAATGAAAGTAGCCAATGAGTCTAAAGAGATAGCACCATTGGAGACTCAAAAAGTGCTTCCCTTTTCAGAACTTGCTGCTGCTCTAGAAAATCCCAAGGCTCCTACGGTTATGCCTCGAGTAGGCGATTGCTCGATGGATAGCTGCTTGACATCAGCTGGAAGCCCGGTTTCCCCGATCGGAGTAGGATCAACTACCACCGGAATGAAGAGACCGAGACCAGTTTTTAGTCATGGAGATTCGATGGCGCTCGAGGGCAATGCTCGACACGACGTCGAATGGATGATGAGATGAAAATTAGGACTTTGCCTTAAAACGTACAGCCTTTTCTTCTGAGCTACTTGCTCTCTTGTTCACTTCTGTAATGAAAGTATTATACAATCTGTTTTGTGGCTTGTAAATTCTTCATAATCAGACGCTTTTGGCCTCTTTGATCTTCATTTACATAACATAACATGGAGGGCAAAATGGTAAATTTCAAAAGTTATTCTTGCATTA ATGCTCTCTGGGTTCTCACAGGAACCGGCAGGAATGTACTCTGCCATTCCGGCGCTGCCGATGGACGGCGGAGGCGGCGGCGGCGGCGGCAAGTTTCTGGGTTCTCTAGACGGAACGAATCTTCCTGGAGATGCTTGTTTGGTTCTCACGTCGGATCCCAAACCACGCCTCCGATGGACGGCGGAGCTCCATGAGCGATTCGTCGACGCCGTCACTCAGCTCGGTGGCTCCGACAAGGCAACCCCAAAAACAATTATGAGAACAATGGGAGTAAAAGGCCTCACCCTTTATCACTTAAAATCACACCTCCAGAAATATCGGCTCGGGAAGCAATCGTTCAAGGAATCGACGGAGAACTCGAAGGATGCTTCTTGCATTGCAGAAAGTCAAGAAACAAGTTCGTCATCATCACCATCGTCAAAAATAGTAGCTCGAGATTTGAACGATAGTTTCCAAGTCACTGAGGCGTTACGAGCACAGATGGAGGTTCAAAGAAGGCTGCACGAGCAGCTCGAGGTGCAGCGTCGACTTCAACTTCGCATTGAAGCACAAGGAAAATACTTGCAGTCGATACTCGAGCGGGCGTGTCGAGCATTAAGCGATCAGGCTGCAGCATCTGCTGGACTCGAAGCTGCACGAGAAGAGCTCTCTGAACTTGCAATGAAAGTAGCCAATGAGTCTAAAGAGATAGCACCATTGGAGACTCAAAAAGTGCTTCCCTTTTCAGAACTTGCTGCTGCTCTAGAAAATCCCAAGGCTCCTACGGTTATGCCTCGAGTAGGCGATTGCTCGATGGATAGCTGCTTGACATCAGCTGGAAGCCCGGTTTCCCCGATCGGAGTAGGATCAACTACCACCGGAATGAAGAGACCGAGACCAGTTTTTAGTCATGGAGATTCGATGGCGCTCGAGGGCAATGCTCGACACGACGTCGAATGGATGATGAGATGA MLSGFSQEPAGMYSAIPALPMDGGGGGGGGKFLGSLDGTNLPGDACLVLTSDPKPRLRWTAELHERFVDAVTQLGGSDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQSFKESTENSKDASCIAESQETSSSSSPSSKIVARDLNDSFQVTEALRAQMEVQRRLHEQLEVQRRLQLRIEAQGKYLQSILERACRALSDQAAASAGLEAAREELSELAMKVANESKEIAPLETQKVLPFSELAAALENPKAPTVMPRVGDCSMDSCLTSAGSPVSPIGVGSTTTGMKRPRPVFSHGDSMALEGNARHDVEWMMR
BLAST of Carg24763-RA vs. NCBI nr
Match: XP_023526634.1 (protein PHR1-LIKE 2-like isoform X1 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 498.8 bits (1283), Expect = 1.3e-137 Identity = 298/316 (94.30%), Postives = 301/316 (95.25%), Query Frame = 0
BLAST of Carg24763-RA vs. NCBI nr
Match: XP_023526635.1 (protein PHR1-LIKE 2-like isoform X2 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 492.7 bits (1267), Expect = 9.6e-136 Identity = 289/316 (91.46%), Postives = 292/316 (92.41%), Query Frame = 0
BLAST of Carg24763-RA vs. NCBI nr
Match: XP_008438354.1 (PREDICTED: myb family transcription factor APL isoform X1 [Cucumis melo]) HSP 1 Score: 482.6 bits (1241), Expect = 9.9e-133 Identity = 282/315 (89.52%), Postives = 291/315 (92.38%), Query Frame = 0
BLAST of Carg24763-RA vs. NCBI nr
Match: XP_022924300.1 (protein PHR1-LIKE 2 isoform X1 [Cucurbita moschata]) HSP 1 Score: 475.7 bits (1223), Expect = 1.2e-130 Identity = 287/304 (94.41%), Postives = 290/304 (95.39%), Query Frame = 0
BLAST of Carg24763-RA vs. NCBI nr
Match: XP_022924301.1 (protein PHR1-LIKE 2 isoform X2 [Cucurbita moschata]) HSP 1 Score: 469.5 bits (1207), Expect = 8.7e-129 Identity = 278/304 (91.45%), Postives = 281/304 (92.43%), Query Frame = 0
BLAST of Carg24763-RA vs. TAIR10
Match: AT3G24120.2 (Homeodomain-like superfamily protein) HSP 1 Score: 239.2 bits (609), Expect = 3.5e-63 Identity = 178/276 (64.49%), Postives = 206/276 (74.64%), Query Frame = 0
BLAST of Carg24763-RA vs. TAIR10
Match: AT4G13640.2 (Homeodomain-like superfamily protein) HSP 1 Score: 220.7 bits (561), Expect = 1.3e-57 Identity = 188/316 (59.49%), Postives = 218/316 (68.99%), Query Frame = 0
BLAST of Carg24763-RA vs. TAIR10
Match: AT1G79430.2 (Homeodomain-like superfamily protein) HSP 1 Score: 141.7 bits (356), Expect = 7.5e-34 Identity = 98/165 (59.39%), Postives = 116/165 (70.30%), Query Frame = 0
BLAST of Carg24763-RA vs. TAIR10
Match: AT3G04030.3 (Homeodomain-like superfamily protein) HSP 1 Score: 135.2 bits (339), Expect = 7.1e-32 Identity = 120/236 (50.85%), Postives = 153/236 (64.83%), Query Frame = 0
BLAST of Carg24763-RA vs. TAIR10
Match: AT3G12730.1 (Homeodomain-like superfamily protein) HSP 1 Score: 130.2 bits (326), Expect = 2.3e-30 Identity = 68/110 (61.82%), Postives = 81/110 (73.64%), Query Frame = 0
BLAST of Carg24763-RA vs. Swiss-Prot
Match: sp|Q94A57|PHL2_ARATH (Protein PHR1-LIKE 2 OS=Arabidopsis thaliana OX=3702 GN=PHL2 PE=1 SV=1) HSP 1 Score: 253.4 bits (646), Expect = 3.2e-66 Identity = 174/273 (63.74%), Postives = 205/273 (75.09%), Query Frame = 0
BLAST of Carg24763-RA vs. Swiss-Prot
Match: sp|Q8LAJ7|PHL3_ARATH (Protein PHR1-LIKE 3 OS=Arabidopsis thaliana OX=3702 GN=PHL3 PE=1 SV=1) HSP 1 Score: 250.4 bits (638), Expect = 2.7e-65 Identity = 186/313 (59.42%), Postives = 221/313 (70.61%), Query Frame = 0
BLAST of Carg24763-RA vs. Swiss-Prot
Match: sp|Q9SAK5|APL_ARATH (Myb family transcription factor APL OS=Arabidopsis thaliana OX=3702 GN=APL PE=1 SV=2) HSP 1 Score: 141.7 bits (356), Expect = 1.4e-32 Identity = 98/165 (59.39%), Postives = 116/165 (70.30%), Query Frame = 0
BLAST of Carg24763-RA vs. Swiss-Prot
Match: sp|Q9SQQ9|PHL9_ARATH (Myb-related protein 2 OS=Arabidopsis thaliana OX=3702 GN=MYR2 PE=1 SV=1) HSP 1 Score: 135.2 bits (339), Expect = 1.3e-30 Identity = 120/236 (50.85%), Postives = 153/236 (64.83%), Query Frame = 0
BLAST of Carg24763-RA vs. Swiss-Prot
Match: sp|Q8VYI2|PHLC_ARATH (Myb family transcription factor PHL12 OS=Arabidopsis thaliana OX=3702 GN=PHL12 PE=2 SV=1) HSP 1 Score: 130.2 bits (326), Expect = 4.1e-29 Identity = 68/110 (61.82%), Postives = 81/110 (73.64%), Query Frame = 0
BLAST of Carg24763-RA vs. TrEMBL
Match: tr|A0A1S3AWU1|A0A1S3AWU1_CUCME (myb family transcription factor APL isoform X1 OS=Cucumis melo OX=3656 GN=LOC103483479 PE=4 SV=1) HSP 1 Score: 482.6 bits (1241), Expect = 6.6e-133 Identity = 282/315 (89.52%), Postives = 291/315 (92.38%), Query Frame = 0
BLAST of Carg24763-RA vs. TrEMBL
Match: tr|A0A0A0L435|A0A0A0L435_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G130900 PE=4 SV=1) HSP 1 Score: 468.0 bits (1203), Expect = 1.7e-128 Identity = 276/311 (88.75%), Postives = 285/311 (91.64%), Query Frame = 0
BLAST of Carg24763-RA vs. TrEMBL
Match: tr|A0A1S3AWT2|A0A1S3AWT2_CUCME (myb family transcription factor APL isoform X2 OS=Cucumis melo OX=3656 GN=LOC103483479 PE=4 SV=1) HSP 1 Score: 424.1 bits (1089), Expect = 2.8e-115 Identity = 261/315 (82.86%), Postives = 269/315 (85.40%), Query Frame = 0
BLAST of Carg24763-RA vs. TrEMBL
Match: tr|A0A2P6QWK3|A0A2P6QWK3_ROSCH (Putative sterol 14-alpha-demethylase transcription factor MYB-HB-like family OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr4g0415391 PE=4 SV=1) HSP 1 Score: 365.9 bits (938), Expect = 9.0e-98 Identity = 229/305 (75.08%), Postives = 263/305 (86.23%), Query Frame = 0
BLAST of Carg24763-RA vs. TrEMBL
Match: tr|F2QKV9|F2QKV9_ROSRU (Putative MYB transcription factor OS=Rosa rugosa OX=74645 GN=myb6 PE=2 SV=1) HSP 1 Score: 363.6 bits (932), Expect = 4.5e-97 Identity = 228/305 (74.75%), Postives = 263/305 (86.23%), Query Frame = 0
The following BLAST results are available for this feature:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
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