Carg24741-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg24741-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Peptidylprolyl isomerase
Location	Cucurbita_argyrosperma_scaffold_259 : 129949 .. 137394 (-)
Sequence length	868

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCATAGAATCCTCTCCTTTTCTTCCTCATCCACTTCGTTTCAACTTATCCATTAACGTCATCGTCTTCGCAACTTTTCAGGCTGTGCCATGGGAGTTCTCTCGTTCTGGAGCTTGTTTCGCTCTCCTTCCGCCGTCAAATTTTCTAGGTATGCTCTTCCATGGCCGAATTTCTATACTCCACTCGGATTCTGTTGAATTTTGTGTTTCTCTACTCAATAGTAGGTTTCCCTTTGCGTTTGTAGCATTCATTGAAATATACTTTAGGTGTCCTGTGTTAAATTTTTATGTTGTGATTAGTTTGAAGAAACGTACTGAGATTCTTTGATTACTGAGATTTTAAGGCACACGGAGAATGTGAATAAAGATAAAATTTATGAACTTAAGCTTTTGGATTTGATGGCAGTTCAGCATGGAATTAAAGAACGAGCTTCTTTGTTTGAACTTTTGGGATGGTATTTCCTGTCCAATTAAAATAGTGAGAACCAGGCTTCGGGTTGAAGGATGATTTAGATGTTAGAAGCCACGAGTATGATATTGTCCACTTTGAGCATAAGCTCTCGTGACTTTGGTTTTGGTTTCTCTAGCCTCATACCAATGGAGATATATTCCTTACTTATGAACCCATGATCATCACCTTAATTAGCCAATGTAGGACTCTCTCCCAACAATCCTCCCTTCGAACAAAGTACACCATAGAGCCTCTCCTGAGACCTATGGAGCCCTCGAAAATCTTCCCCTTAATCGAGGCTTGACTCCTTTTCTACGGTCCTTGAACAAAGAGCACCATTTGTTTGACACTTGAGTCACTTTTGACTCTATTCGAAGCTTACAACTTCTTTGTTCGACATTTGAGGATTCTATTGACATGGCTAAGTTAAGGGCATGACTCTAATACCATGTTAGAAACCACGAACCTCCACGATGGTATGATGTTGTTCACTTTGAGCATAAGCTCTCGTGTCTTTGCTTTTTGTTTCCCCAAAAGGCCTCATACCATTGGAGATATATTTCTTATTTATAAACATATGATCATACCCTTAATTAGTCAACGAGGAACTCTCTCCCCAACCGTCCTCAACATTAAATATCATCTAAGCTTTCTTATAGCCTATGCTGCTGGGAATTGCAAAATTGTATATAGATTGCATAAATTGTTTGATCATGGCGTGTTTGGTACTGATAATTTTCTTTGTTGAGTTATTGGTTTTTTGCTCACCAATCGGTTGCATTATTTTCATTTGCATGGTATCTGTGAGATCCCACATCGGTTAGAGAGGGAAAAGAAGCGTTCATTGTAAGGGTGTGGAAACCTTTCCCTAGTAGACTGTTTTAGAACCATGAGGCCGACAACGATACATAATGGGCTAAAGTAGGACAATATCTGCTAGCAGTGGCCTTGAGTTGTTACAAATGATATCAGAGCCAGACACTAGGCGCTGTGTCAGCGAGTACGTTGGGCCTCAGGAAGGGGGGGGGGGTGGATTGTGAGATCACACATCGGTTGGAGAAGGGAACGTAGCATTCCTTTTACCCTTCCCTAGAGACGCGTTTTAAAATCATGAGGCTGACGGCGATACATAACGGACCAAAGCAAACAATATTTGCTAGCGGTGGGCTTGGATTATTACAAATAGTATTAGAGCCAGTTACCAGGCAACATGCCAGCGAGGACGTTGGGCCTCCAAAGGGGGTGGATTGCGAGATCCTACATCGGTTGGAGAGGAGAACGAAACATTTCTTATAAGGGTGTGGAAACCTCTCCGTAGTAGACGTGTTCTAAAATCGTGAGGCTGATGGCGATACATAACGGGCCAAAGCGAACAATATCTGCTAGTCGTGAGCTTGAACTATGTTGCAAATGGTATCAGAGCTAGTCACTGGGCAGTCTATCAGTGAGGACGTTGGGCTTCCAAGGAGGGTGGATTGTGAGATCCCACATCGATTGGAGATGGGAACGAAACATTCCTTATAAGGGTGTGGAAACCTCTCCCTAGTAGACGCGTTTTAAAACCATGAGACTAACCGCGATACGTAACGTGCCAAAGCAGACAATATCCGCTATCGGTGGGTTTGAGTTATTACAAATGGTATCAAAGCCGCACATCGGGCGGTGTGCCAGTGAGGACGTTGGCTCCTAAAGGGAGTGGATTGTGAGACCCCGCATTGGTTGGAGAGGGGAACAAAACATTCCTTAGAAGGATGTGGAAACCTCTCTATAGTAAACACATTTTAAAACCTCAAGGGGAAGTCCATAAGGGAAAGCCCAAAGATGACGATACTTGCTAGCGGTGGGATTAGACTATTACACTATTTTAAGTCCGGTGTCAAAATATGTCATAACGTCTCTCTCCTCCTTTCAATCAGGATGATTGTTTAATGTTTCAAACTGTTCTTCAATCCAAGAACTCCAAACCTTAAATTCTGAGAATAGATATCTATATCAAACGATACTCACTTCTTGACAGCTTATGAATGGATGTTCTTGTAGTTTCCACAAAGCCATTTGCATGGCTGATGAAGTATCCATATCCAAGCATCATATGGTCAATCACTTAGACATTTTTTCTGGCAAACGATTTCCAAGAAGGCTGTTCTCGCAGTTCATTGGTTCGTATCCGATCTTGTTATATGCAAATCCTAGTTTCGGTGCACCGATGATGGACGTGCAAGAACCGGAAATAGTTCGGTATGTATTTCATTTGTAACTTTTTTCTTGAAATGTTCATATCATTTTCTTAACATCACAATGAAGAGGGCTGCCATGACCATCCATCAAAAGTGCTTTACATGTTCTCATTTGGAATTGTTGTTTAAATTTTGAAGCTTTCAGGACGCTAAAGCTCGACAGTGGAGTTCGGATTCAAGGTAGAATTTCTTTGTTTAAAATCTCAAGATTTAATAAATCTTTTTGTAACGATCCAAGCCCACCGCTAGTAGATATTGTCTTCTTTGGGCTTTCCCTTTCGGGCTTCCCCTAAAGGCTTTAAAACACGTATAATAGGGGAAGGTTTCCACACCCTTATAGAGGATGTTTTGTTCTCCTCCCCAACCAATGTGGGACATCACAATCCACCCCCCTTCGGGGCCCAGCGTCCTCGCTGGCACTCATTCCTTTCTCCAATCGATGTGGGACCACCACCAAATCCACCCCCTTTGGGGTCCAGCGTCCTTATTGGCACACCACCTCGTGTCTATCCCCCTTCGGGAAACAGTGAGAAAGCTGGCACATCATCCGGTGTCTAACTCTGATGCCATTTGTAACGACCCAGGCTCACCGCTAGCAGATATTGTCCTCTTTGGGCTTTTCTTTTCGGGCTTCCCCTCAAGGCATTAAAATGCGTCTGCTAGGGGAAGGTTTCCACACCCTTATAAAGGGTGTTTTGTTCTCCTCCCCAACCAATGTGGGACATCACAATTGTTTATAGATGAACATGTTTGGTTGTAACGTAGCAGGCTCGTTTTATGGCATTTTGAATATGGTATAGCTTGAGTTCCTTCTTCATACTGAATTGTGATGAAAACTACATTATTTGTGTTCAATGATTGTTCTATATAATTCTTGAATATGGAAACAAATAAGGTCTATGATTAATGATTTCACTGTACTAACATTTTTAGTTCCAATTAATAGAAGTTCTTGAGGGAGATGGAGCAGAAGCACATGAAGGAGACTTGGTGGAGTTCAATTATGTCTGCAGGCGTTCAAATGGATACTTCGTTCATAGGTAATGTATTTGTCGGAAGCATTCCTTGTAAGTGTGTGGAAACCTCTCTCTAGCAGACGCGTATTAAAAACCTTGAGGCAAAGCCCGAAAAGGAAAGTCCAAAGAGGACAATATCTACTAGCGGTGGGTTTGAACTGATGCAAATAGTATCAGAGCTAGACACCGAGCGGTGTGCCAGCAAGGACGTTGGGCCCCCAAGGGGGTGGGGATTGTGAGATTCTACATTGGTTGGAGAGGGGAATGAAACATTTCTTATAAGAGTGTGAAAACCTCTCTCTAGCAGACCCGTTTTAAAAACTTTGAGGCGATACTCGAAAAGGAAAGTCCAAAGAGGACAATATCGGTTAGCGGTGGGCTTGAGCTGTTACAAATGGTATCAGAGCCAAACACCGAGCGGTGTGCCAACATGGACATTGGCCCCAAGGGGGGTGGATTGTGAGATCCCACATTGATTGGAGATGGGAACGAAACATTTCTTATAAGGGTGTGGAAACCTCTCCCTATCAGACACGTTTTAAAAACCTTGAGGTGAAACCCAAAAAGGAAAGTGGAAAGAGGACAATATCTGCTAGCGGTGGGCTTGAGCTGTTACAAATGGTATCAGAGCTAGACACCAACTGGTATGTCAGTGGGGACACTGTGTCCCCAAAAGGGGTAGATTGTGAGATCCCACATTGGTTGGAGAGGGGAACGAAACATTTCTTATAAGGGTGTGGAAACCTCTCTCTAACAGACGCGTTTTAAAAACTTCGAGGGGAAGGCCGAAAGGAAGTTACAATGTAATCCCTAAAGTACAAGGACTAAATCATTCCCATTGCCTCTGTTATCATATTCACAGCACGGTAGATCAATTCAGTGGAGAGAGCACACCAGTAATCCTGCCTTTGAAAGAAAACCAGGTAATCTCTTCTTTTACATCGGTTCTTCAAGAAAACTATGGGGGCGATAAACTTTCGAGAATTTTGTATAGATATTAATTATGGTCGTTCTATTTTTCGATGTGCAATGATCTGTTTACGAGTGTGTAATTGTCGATAGCGGATATGCTTGTTGTCGATAGCGGATAGCTTCAGTTTATGCAGCCTATCACTAGAACTTTGCTGGTTTTTGGAAGATCCTCTGTTAGTTAGCTTGTATAATCTTCTCTTTTTAAAAACGCTTAGTTTGCTCGATCAGCTTTCGAGTTTTGTATCATTCAATGATTGGATCAGCTTTCGAGTTTTTGGCGTTTATTACTGATGATATTTGTTTCTTACAGATAATAGAGGGCTTGAAAGAGGTTCTGGTTGGCATGAGAGTTGGAGGTATTGTATGGATATTCAATCATCTTTACTCAGTTTGTTCTTATGCTTATTTACCCTTAGCCAATCAAGCTGTTCATGGCTTTTATTATGCAGAAACCTCTTCAACTTCTTTGGATTAGCCTTGTATTTTAGGTTTCTATTGTCTTAACTTCTACCTTTTATATCGCTTCGTTTGCTTCACGACTTACGGCTGAAATAGGAAACGAGGAACATAAACGTTACTGGATCACCTTTAATCTTGCACATCTGTTAATGGGATATTTCTCATATGTGAGATCCCACATCGGTTGGAGTGAGAAATGAAGCATTCCTTATAAGGGTGTGGAAACCTTTGCCTAACAGACGCATCTTAAAACCGTGAGGCTAATGGCAATACGTAATGGGCCAAAATGGACAATATCTGCTAGGCGTGGGCTTGGGTTGTTACAAATAGTGTTAGAGTCATACACGGGGCAGTGTGTTAGTGAGGACGCTGGGCCCCCAAGAGGGTTAATTGTGAGATCTCACATCGATTGGAGAGGGGAACGAAGCATTCCTTATAAGGGTGTGGAAGCCTCTACCTAGTAAGAGTGTTTTAAAACTGTGAGGCTAACGATGGTACGTAACGGGCCAAAATGGACATATCTGCCAGCGGTGGGCTTGGGCTGTTACAAATGGTATCAGAGTCAGATATCGGGCAATGTGCCAGCGAGGACACGTTAGGCCCCTAAGGGGGGTGGATTGTGAGATCCCACATCAGTTGGAGAGGAGAACGAAGCATTCTTATGTGGAAACCTCTGCCTAATAGACACGTTTTAAAACCGTCAAGGAGGTCCTTTTCTTTCTCCAGACCGATGACTCGCTTGGCTGTATGGGCAGGTTCTCCCTCGCTGCTGCGTTCTGTTAGGCTATGGATTATAGAAACAAATGTAGTTGAATGAGACAGCAGGCAGGTTACACGTTCCACTGTGCCGAGATATGAGGTGCAAGTGGTGATGATCACCCCAGGGTATGCGCGGGAGCCCTTGACAGGCACTCCAGGACCTGCCAACGGTCACGAGGCTATACGTAACGGGGCTAAAACGGACAATATTTGTTAACGGTGGGCTTGTGGTGTTACAAATGGTATCAGAGTCAGATATCGGGCGGTGTGCCAGTGTAGACATAGAGCCCCAAAAGGGGATAGATTGTGAGATCCTACATCGGTTGGAGAGGGGAACGAAACATTCCTTATAAGGATGTGGAAACCTTTGCTTAGTAAACACGTTTTAAAACCGTGAACTTGACGGCGATACGTAACGGGTCAAAACGGATATATCTGCTAGCGGTGGGCTTGGGCTGTTACAAATGGTATCAAAGTCAAACATCGGTCAGTGTGCCAACAAGGACACGTTAGGCCCCCAATGGGGGTGGATTGTGAGATCTCACATCAGTTGGAGAGGGGAATGAAGCATTCCTTATAAGAATGTGGAAACCTCTACCTAGTAGACACGTTTTAAAACCGTGAGGCTGACGGCGATACATAACGGGCTAAAACGGACAATATTTATTAACGGTGGGCTTGTGGTGTTACAAATGGTATCAGAGTCAGACACCGGACGGTGTGCCAGTGTAGACACAGAGCCCACAAAGTGGGTGGATTGTGAAATCCTACATCGGTTGGAGAGGGGAACGAAACATTCCTTATAAGGGTGTGGAAACCTTTGCCTAACAGACACATTTTAAAACTGTGAACCTGATAGCAATACGTTTATTATTTGTTATCAGGAAAAAGAAGAGCACTTATCCCTCCGTCAGTGGGTTACATAAATGAGAATTTGAACCCAATTCCTGAAGAGGTAAAGCAAAAAAGTTCTTTCTCTAATCAGCATTAACATTATAGATTATCCATCCTAATCACTTGTTTTGGTCATATTATTTCTTAAGCATGACAACGTTGGTCGATAAAATTAAGTTCGCTTTGTTGCAGTTTGGTCCTCGACGTAGTCTTTTATCGCATCGGAACGAGCCCTTGATATTTGAGGTGCAACTTTTGAAAGTTCAATGAGTATCATTCTCCGTCGATATTGACTTAAACCCTTGTATATTCAATGTTGATATTTGAAAATATGAGTAGAAAGTTCTTTCATAGCGGGCTCACGTCATCGTTATGTGGTGTGTCCCTTGCCATTATTCAGCCTATGACCCTTCGACTGTAATCAGAGGCCGAACGAATGTGTAATTGCTATTAAAAGATGGAAAGTCAGAAGACAAATGTTGATATTTTCTTTGTTGTATCTGAAAAGAACATACTCTCGATGATCATAGCCTTGACTTTCTATGTTATTAGTACAATACAGGAGCGTTCTAACAGGCTTGCTACCTTATTATTATTCCGAACTTGACACCCATCAAATCATTGGCCCGGGGTGCTCCTGTTGGCCTAATTACACGTGTT

mRNA sequence

CCATAGAATCCTCTCCTTTTCTTCCTCATCCACTTCGTTTCAACTTATCCATTAACGTCATCGTCTTCGCAACTTTTCAGGCTGTGCCATGGGAGTTCTCTCGTTCTGGAGCTTGTTTCGCTCTCCTTCCGCCGTCAAATTTTCTAGTTTCCACAAAGCCATTTGCATGGCTGATGAAGTATCCATATCCAAGCATCATATGGTCAATCACTTAGACATTTTTTCTGGCAAACGATTTCCAAGAAGGCTGTTCTCGCAGTTCATTGGTTCGTATCCGATCTTGTTATATGCAAATCCTAGTTTCGGTGCACCGATGATGGACGTGCAAGAACCGGAAATAGTTCGGTATATAATAGAGGGCTTGAAAGAGGTTCTGGTTGGCATGAGAGTTGGAGGTATTTTTGGTCCTCGACGTAGTCTTTTATCGCATCGGAACGAGCCCTTGATATTTGAGGTGCAACTTTTGAAAGTTCAATGAGTATCATTCTCCGTCGATATTGACTTAAACCCTTGTATATTCAATGTTGATATTTGAAAATATGAGTAGAAAGTTCTTTCATAGCGGGCTCACGTCATCGTTATGTGGTGTGTCCCTTGCCATTATTCAGCCTATGACCCTTCGACTGTAATCAGAGGCCGAACGAATGTGTAATTGCTATTAAAAGATGGAAAGTCAGAAGACAAATGTTGATATTTTCTTTGTTGTATCTGAAAAGAACATACTCTCGATGATCATAGCCTTGACTTTCTATGTTATTAGTACAATACAGGAGCGTTCTAACAGGCTTGCTACCTTATTATTATTCCGAACTTGACACCCATCAAATCATTGGCCCGGGGTGCTCCTGTTGGCCTAATTACACGTGTT

Coding sequence (CDS)

ATGGGAGTTCTCTCGTTCTGGAGCTTGTTTCGCTCTCCTTCCGCCGTCAAATTTTCTAGTTTCCACAAAGCCATTTGCATGGCTGATGAAGTATCCATATCCAAGCATCATATGGTCAATCACTTAGACATTTTTTCTGGCAAACGATTTCCAAGAAGGCTGTTCTCGCAGTTCATTGGTTCGTATCCGATCTTGTTATATGCAAATCCTAGTTTCGGTGCACCGATGATGGACGTGCAAGAACCGGAAATAGTTCGGTATATAATAGAGGGCTTGAAAGAGGTTCTGGTTGGCATGAGAGTTGGAGGTATTTTTGGTCCTCGACGTAGTCTTTTATCGCATCGGAACGAGCCCTTGATATTTGAGGTGCAACTTTTGAAAGTTCAATGA

Protein sequence

MGVLSFWSLFRSPSAVKFSSFHKAICMADEVSISKHHMVNHLDIFSGKRFPRRLFSQFIGSYPILLYANPSFGAPMMDVQEPEIVRYIIEGLKEVLVGMRVGGIFGPRRSLLSHRNEPLIFEVQLLKVQ

Homology

[Close]

BLAST of Carg24741-RA vs. NCBI nr
Match: XP_022937354.1 (peptidyl-prolyl cis-trans isomerase FKBP16-1, chloroplastic isoform X5 [Cucurbita moschata])

HSP 1 Score: 221.5 bits (563), Expect = 1.7e-54
Identity = 124/184 (67.39%), Postives = 125/184 (67.93%), Query Frame = 0


Query: 1   MGVLSFWSLFRSPSAVKFSSFHKAICMADEVSISKHHMVNHLDIFSGKRFPRRLFSQFIG 60
           MGVLS WSLFRSP AVKFSSFHKAICMADEVSISKHHMVNHLDIFSGKRFPRRLFSQFIG
Sbjct: 1   MGVLSLWSLFRSPCAVKFSSFHKAICMADEVSISKHHMVNHLDIFSGKRFPRRLFSQFIG 60

Query: 61  SYPILLYANPSFGAPMMDVQEPEIVRY--------------------------------- 120
           SYPILLYANPSF APMMDVQEPEIVR+                                 
Sbjct: 61  SYPILLYANPSFSAPMMDVQEPEIVRFQDAKARQWSSDSSTVDQFSGESTPVILPLKENQ 120

Query: 121 IIEGLKEVLVGMRVGG----------------------IFGPRRSLLSHRNEPLIFEVQL 130
           IIEGLKEVLVGMRVGG                       FGPRRSLLSHRNEPLIFEVQL
Sbjct: 121 IIEGLKEVLVGMRVGGKRRALIPPSVGYINENLNPIPEEFGPRRSLLSHRNEPLIFEVQL 180

[Close]

BLAST of Carg24741-RA vs. NCBI nr
Match: XP_023534865.1 (peptidyl-prolyl cis-trans isomerase FKBP16-1, chloroplastic isoform X4 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 215.7 bits (548), Expect = 9.2e-53
Identity = 121/184 (65.76%), Postives = 124/184 (67.39%), Query Frame = 0


Query: 1   MGVLSFWSLFRSPSAVKFSSFHKAICMADEVSISKHHMVNHLDIFSGKRFPRRLFSQFIG 60
           MGVLSFWS FRSPSAVKFSSFHK ICMADEVSISKHH VNHLDIFS KRFPRRLF+QFIG
Sbjct: 1   MGVLSFWSSFRSPSAVKFSSFHKTICMADEVSISKHHTVNHLDIFSVKRFPRRLFAQFIG 60

Query: 61  SYPILLYANPSFGAPMMDVQEPEIVRY--------------------------------- 120
           SYPILLYANPSFGAPM+DVQEPEIVR+                                 
Sbjct: 61  SYPILLYANPSFGAPMIDVQEPEIVRFQDAKARQWSSDSSTIDQFSGESTPVILPLKQNQ 120

Query: 121 IIEGLKEVLVGMRVGG----------------------IFGPRRSLLSHRNEPLIFEVQL 130
           IIEGLKEVLVGMRVGG                       FGPRRSLLSHRNEPLIFEVQL
Sbjct: 121 IIEGLKEVLVGMRVGGKRRALIPPSVGYINENLNPIPEEFGPRRSLLSHRNEPLIFEVQL 180

[Close]

BLAST of Carg24741-RA vs. NCBI nr
Match: XP_022976015.1 (peptidyl-prolyl cis-trans isomerase FKBP16-1, chloroplastic isoform X4 [Cucurbita maxima])

HSP 1 Score: 214.2 bits (544), Expect = 2.7e-52
Identity = 121/184 (65.76%), Postives = 123/184 (66.85%), Query Frame = 0


Query: 1   MGVLSFWSLFRSPSAVKFSSFHKAICMADEVSISKHHMVNHLDIFSGKRFPRRLFSQFIG 60
           MGVLSFWSLFRSPSAVKF SFHK I MADEVSISKHHMVNH+D FS KRFPRRLFSQFIG
Sbjct: 1   MGVLSFWSLFRSPSAVKFPSFHKTIYMADEVSISKHHMVNHVDFFSVKRFPRRLFSQFIG 60

Query: 61  SYPILLYANPSFGAPMMDVQEPEIVRY--------------------------------- 120
           SYPILLYANPSFGAPMMDVQEPEIVR+                                 
Sbjct: 61  SYPILLYANPSFGAPMMDVQEPEIVRFQDAKARQWSSDSSTVDQFSGESTPVILPLKENQ 120

Query: 121 IIEGLKEVLVGMRVGG----------------------IFGPRRSLLSHRNEPLIFEVQL 130
           IIEGLKEVLVGMRVGG                       FGPRRSLLSHRNEPLIFEVQL
Sbjct: 121 IIEGLKEVLVGMRVGGKRRALIPPSMGYINENLNPIPEEFGPRRSLLSHRNEPLIFEVQL 180

[Close]

BLAST of Carg24741-RA vs. NCBI nr
Match: XP_022937350.1 (peptidyl-prolyl cis-trans isomerase FKBP16-1, chloroplastic isoform X1 [Cucurbita moschata])

HSP 1 Score: 208.8 bits (530), Expect = 1.1e-50
Identity = 124/213 (58.22%), Postives = 124/213 (58.22%), Query Frame = 0


Query: 1   MGVLSFWSLFRSPSAVKFSSFHKAICMADEVSISKHHMVNHLDIFSGKRFPRRLFSQFIG 60
           MGVLS WSLFRSP AVKFSSFHKAICMADEVSISKHHMVNHLDIFSGKRFPRRLFSQFIG
Sbjct: 1   MGVLSLWSLFRSPCAVKFSSFHKAICMADEVSISKHHMVNHLDIFSGKRFPRRLFSQFIG 60

Query: 61  SYPILLYANPSFGAPMMDVQEPEIVR---------------------------------- 120
           SYPILLYANPSF APMMDVQEPEIVR                                  
Sbjct: 61  SYPILLYANPSFSAPMMDVQEPEIVRTLKLDSGVRIQEVLEGDGAEAHEGDLVEFNYVCR 120

Query: 121 ----------------------------YIIEGLKEVLVGMRVGG--------------- 130
                                        IIEGLKEVLVGMRVGG               
Sbjct: 121 RSNGYFVHSTVDQFSGESTPVILPLKENQIIEGLKEVLVGMRVGGKRRALIPPSVGYINE 180

[Close]

BLAST of Carg24741-RA vs. NCBI nr
Match: XP_023534862.1 (peptidyl-prolyl cis-trans isomerase FKBP16-1, chloroplastic isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 203.0 bits (515), Expect = 6.2e-49
Identity = 121/213 (56.81%), Postives = 123/213 (57.75%), Query Frame = 0


Query: 1   MGVLSFWSLFRSPSAVKFSSFHKAICMADEVSISKHHMVNHLDIFSGKRFPRRLFSQFIG 60
           MGVLSFWS FRSPSAVKFSSFHK ICMADEVSISKHH VNHLDIFS KRFPRRLF+QFIG
Sbjct: 1   MGVLSFWSSFRSPSAVKFSSFHKTICMADEVSISKHHTVNHLDIFSVKRFPRRLFAQFIG 60

Query: 61  SYPILLYANPSFGAPMMDVQEPEIVR---------------------------------- 120
           SYPILLYANPSFGAPM+DVQEPEIVR                                  
Sbjct: 61  SYPILLYANPSFGAPMIDVQEPEIVRTLKLDSGVRIQEVLEGDGAEAHEGDLVEFNYVCR 120

Query: 121 ----------------------------YIIEGLKEVLVGMRVGG--------------- 130
                                        IIEGLKEVLVGMRVGG               
Sbjct: 121 RSNGYFVHSTIDQFSGESTPVILPLKQNQIIEGLKEVLVGMRVGGKRRALIPPSVGYINE 180

[Close]

BLAST of Carg24741-RA vs. TAIR10
Match: AT4G26555.1 (FKBP-like peptidyl-prolyl cis-trans isomerase family protein)

HSP 1 Score: 61.6 bits (148), Expect = 4.0e-10
Identity = 34/63 (53.97%), Postives = 38/63 (60.32%), Query Frame = 0


Query: 88  IIEGLKEVLVGMRVGG----------------------IFGPRRSLLSHRNEPLIFEVQL 129
           +IEGLKEVLVGM+ GG                       FGPRRSLLSH NEPL+FE+QL
Sbjct: 144 VIEGLKEVLVGMKAGGKRRALIPPSVGYINETLKPIPEEFGPRRSLLSHANEPLVFEIQL 203

[Close]

BLAST of Carg24741-RA vs. Swiss-Prot
Match: sp|Q944B0|FK161_ARATH (Peptidyl-prolyl cis-trans isomerase FKBP16-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=FKBP16-1 PE=2 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 7.3e-09
Identity = 34/63 (53.97%), Postives = 38/63 (60.32%), Query Frame = 0


Query: 88  IIEGLKEVLVGMRVGG----------------------IFGPRRSLLSHRNEPLIFEVQL 129
           +IEGLKEVLVGM+ GG                       FGPRRSLLSH NEPL+FE+QL
Sbjct: 144 VIEGLKEVLVGMKAGGKRRALIPPSVGYINETLKPIPEEFGPRRSLLSHANEPLVFEIQL 203

[Close]

BLAST of Carg24741-RA vs. TrEMBL
Match: tr|A0A0A0K4G4|A0A0A0K4G4_CUCSA (Peptidylprolyl isomerase OS=Cucumis sativus OX=3659 GN=Csa_7G276690 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 5.2e-28
Identity = 89/190 (46.84%), Postives = 94/190 (49.47%), Query Frame = 0


Query: 27  MADEVSISKHHMVNHLDI----FSGKRFPRRLFSQFIGSYPILLYANPSFGAPMMDVQEP 86
           M ++VSISKH MVNHLD+    FS KRFPRRLFSQFIG YPILLYA PSF APMMD+QEP
Sbjct: 1   MDEDVSISKHPMVNHLDVRNASFSVKRFPRRLFSQFIGLYPILLYAYPSFSAPMMDMQEP 60

Query: 87  EIVR-------------------------------------------------------- 129
           +IVR                                                        
Sbjct: 61  DIVRTLKLDSGVRIQEVFEGDGAEAHEGDMVEFNYVCRRSNGYFVHSTVDQFSGESTPVI 120

[Close]

BLAST of Carg24741-RA vs. TrEMBL
Match: tr|A0A0B2NXM9|A0A0B2NXM9_GLYSO (Peptidylprolyl isomerase (Fragment) OS=Glycine soja OX=3848 GN=glysoja_028447 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 3.6e-13
Identity = 50/131 (38.17%), Postives = 67/131 (51.15%), Query Frame = 0


Query: 40  NHLDIFSGKRFPRRLFSQFIGSYPILLYANPSFGAPMM-DVQEPEIVRYI---------- 99
           N + I +  +F RR+  QF+G   ++ YA+P+  AP+M D++EPE++R +          
Sbjct: 33  NRVSILTVDKFSRRMVLQFLGFNQVICYASPALAAPIMPDIKEPEVIRTVDQFSGESNPV 92

Query: 100 ---------IEGLKEVLVGMRVGG----------------------IFGPRRSLLSHRNE 129
                    I GLKEVL GMRVGG                       FGPRRSL  H  E
Sbjct: 93  ILWMRTRQMIVGLKEVLTGMRVGGKRRALIPPSVGYVNENLQPMPEEFGPRRSLFPHAQE 152

[Close]

BLAST of Carg24741-RA vs. TrEMBL
Match: tr|A0A2H5P5Z8|A0A2H5P5Z8_CITUN (Peptidylprolyl isomerase OS=Citrus unshiu OX=55188 GN=CUMW_106990 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 2.4e-12
Identity = 70/212 (33.02%), Postives = 84/212 (39.62%), Query Frame = 0


Query: 1   MGVLSFWSLFRSPSAVKFSSFHKAICMADEVSISKHHMVNHLDIFSGKRFPRRLFSQFIG 60
           MG L+  +    P A K SS  K       VS + H   + + +   KR PRR   QFIG
Sbjct: 1   MGTLAIQASLLFPCASKSSSSIKRGRPNGGVSQNLHATFSSVTV---KRLPRRTLLQFIG 60

Query: 61  SYPILLYANPSFGAPMMDVQEPEIVR---------------------------------- 120
              +LL+ NP F APM +++EPE +R                                  
Sbjct: 61  FSSMLLHVNPDFAAPMPEMKEPEAIRTLKLASGVRIQEIIEGEGPEASEGDIVQLNYVCR 120

Query: 121 ----------------------------YIIEGLKEVLVGMRVGG--------------- 129
                                        II+GLKEVLVGM+VGG               
Sbjct: 121 RSNGYFVHSTVDQFSGESAPVILPLDENKIIKGLKEVLVGMKVGGKRRALIPPSAGYINE 180

[Close]

BLAST of Carg24741-RA vs. TrEMBL
Match: tr|V4TZB3|V4TZB3_9ROSI (Peptidylprolyl isomerase OS=Citrus clementina OX=85681 GN=CICLE_v10009425mg PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 8.9e-12
Identity = 70/212 (33.02%), Postives = 83/212 (39.15%), Query Frame = 0


Query: 1   MGVLSFWSLFRSPSAVKFSSFHKAICMADEVSISKHHMVNHLDIFSGKRFPRRLFSQFIG 60
           MG L+  +    P A K SS  K       VS +     + L +   KR PRR   QFIG
Sbjct: 12  MGTLAIQASLLFPCASKSSSSIKGGRPNGGVSQNLFAKFSSLTV---KRLPRRTLLQFIG 71

Query: 61  SYPILLYANPSFGAPMMDVQEPEIVR---------------------------------- 120
              ++L+ NP F APM D++EPE +R                                  
Sbjct: 72  FSSMVLHVNPDFDAPMPDMKEPEAIRTLKLASGVRIQEIIEGEGPEASEGDIVQLNYVCR 131

Query: 121 ----------------------------YIIEGLKEVLVGMRVGG--------------- 129
                                        II+GLKEVLVGM+VGG               
Sbjct: 132 RSNGYFVHSTVDQFSGESAPVILPLDENKIIKGLKEVLVGMKVGGKRRALIPPSVGYINE 191

[Close]

BLAST of Carg24741-RA vs. TrEMBL
Match: tr|A0A251NJC2|A0A251NJC2_PRUPE (Peptidylprolyl isomerase OS=Prunus persica OX=3760 GN=PRUPE_6G028700 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 8.9e-12
Identity = 69/212 (32.55%), Postives = 87/212 (41.04%), Query Frame = 0


Query: 1   MGVLSFWSLFRSPSAVKFSSFHKAICMADEVSISKHHMVNHLDIFSGKRFPRRLFSQFIG 60
           M  LSF SL + PS ++  S+ +     + V+ + H     L   + KR PRRL  QF+G
Sbjct: 1   MEALSFRSLLQLPSTLRTPSYVEKEQPKNTVAKNLH---ERLHSSAPKRLPRRLLLQFMG 60

Query: 61  SYPILLYANPSFGAPMMDVQEPEIVR---------------------------------- 120
             PIL  ++P F AP+  ++EPE++R                                  
Sbjct: 61  FSPIL--SHPVFAAPVPGMKEPEVIRTLKLPSGVRIQEIVEGQGSAANEGDLVEINYVCR 120

Query: 121 ----------------------------YIIEGLKEVLVGMRVGG--------------- 129
                                        II GLKEVLVGMR+GG               
Sbjct: 121 RTNGYFVHSTVDQFSGESTPVILPLDEKQIIAGLKEVLVGMRIGGKRRALIPPYVGYINE 180

The following BLAST results are available for this feature:

BLAST of Carg24741-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022937354.1	1.7e-54	67.39	peptidyl-prolyl cis-trans isomerase FKBP16-1, chloroplastic isoform X5 [Cucurbit...	[more]
XP_023534865.1	9.2e-53	65.76	peptidyl-prolyl cis-trans isomerase FKBP16-1, chloroplastic isoform X4 [Cucurbit...	[more]
XP_022976015.1	2.7e-52	65.76	peptidyl-prolyl cis-trans isomerase FKBP16-1, chloroplastic isoform X4 [Cucurbit...	[more]
XP_022937350.1	1.1e-50	58.22	peptidyl-prolyl cis-trans isomerase FKBP16-1, chloroplastic isoform X1 [Cucurbit...	[more]
XP_023534862.1	6.2e-49	56.81	peptidyl-prolyl cis-trans isomerase FKBP16-1, chloroplastic isoform X1 [Cucurbit...	[more]

BLAST of Carg24741-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT4G26555.1	4.0e-10	53.97	FKBP-like peptidyl-prolyl cis-trans isomerase family protein	[more]

BLAST of Carg24741-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q944B0\|FK161_ARATH	7.3e-09	53.97	Peptidyl-prolyl cis-trans isomerase FKBP16-1, chloroplastic OS=Arabidopsis thali...	[more]

BLAST of Carg24741-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K4G4\|A0A0A0K4G4_CUCSA	5.2e-28	46.84	Peptidylprolyl isomerase OS=Cucumis sativus OX=3659 GN=Csa_7G276690 PE=4 SV=1	[more]
tr\|A0A0B2NXM9\|A0A0B2NXM9_GLYSO	3.6e-13	38.17	Peptidylprolyl isomerase (Fragment) OS=Glycine soja OX=3848 GN=glysoja_028447 PE...	[more]
tr\|A0A2H5P5Z8\|A0A2H5P5Z8_CITUN	2.4e-12	33.02	Peptidylprolyl isomerase OS=Citrus unshiu OX=55188 GN=CUMW_106990 PE=4 SV=1	[more]
tr\|V4TZB3\|V4TZB3_9ROSI	8.9e-12	33.02	Peptidylprolyl isomerase OS=Citrus clementina OX=85681 GN=CICLE_v10009425mg PE=4...	[more]
tr\|A0A251NJC2\|A0A251NJC2_PRUPE	8.9e-12	32.55	Peptidylprolyl isomerase OS=Prunus persica OX=3760 GN=PRUPE_6G028700 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR023566	PPIase_FKBP

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg24741	Carg24741	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg24741-RA	Carg24741-RA-protein	polypeptide

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg24741-RA.three_prime_UTR.1	Carg24741-RA.three_prime_UTR.1	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg24741-RA.CDS.4	Carg24741-RA.CDS.4	CDS
Carg24741-RA.CDS.3	Carg24741-RA.CDS.3	CDS
Carg24741-RA.CDS.2	Carg24741-RA.CDS.2	CDS
Carg24741-RA.CDS.1	Carg24741-RA.CDS.1	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg24741-RA.five_prime_UTR.1	Carg24741-RA.five_prime_UTR.1	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg24741-RA.exon.4	Carg24741-RA.exon.4	exon
Carg24741-RA.exon.3	Carg24741-RA.exon.3	exon
Carg24741-RA.exon.2	Carg24741-RA.exon.2	exon
Carg24741-RA.exon.1	Carg24741-RA.exon.1	exon

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR43811:SF14	PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKBP16-1, CHLOROPLASTIC	coord: 26..87
None	No IPR available	SUPERFAMILY	SSF54534	FKBP-like	coord: 87..128
IPR023566	Peptidyl-prolyl cis-trans isomerase, FKBP-type	PANTHER	PTHR43811	FAMILY NOT NAMED	coord: 26..87