Carg24741 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg24741
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Peptidylprolyl isomerase
Location	Cucurbita_argyrosperma_scaffold_259 : 129949 .. 137394 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCATAGAATCCTCTCCTTTTCTTCCTCATCCACTTCGTTTCAACTTATCCATTAACGTCATCGTCTTCGCAACTTTTCAGGCTGTGCCATGGGAGTTCTCTCGTTCTGGAGCTTGTTTCGCTCTCCTTCCGCCGTCAAATTTTCTAGGTATGCTCTTCCATGGCCGAATTTCTATACTCCACTCGGATTCTGTTGAATTTTGTGTTTCTCTACTCAATAGTAGGTTTCCCTTTGCGTTTGTAGCATTCATTGAAATATACTTTAGGTGTCCTGTGTTAAATTTTTATGTTGTGATTAGTTTGAAGAAACGTACTGAGATTCTTTGATTACTGAGATTTTAAGGCACACGGAGAATGTGAATAAAGATAAAATTTATGAACTTAAGCTTTTGGATTTGATGGCAGTTCAGCATGGAATTAAAGAACGAGCTTCTTTGTTTGAACTTTTGGGATGGTATTTCCTGTCCAATTAAAATAGTGAGAACCAGGCTTCGGGTTGAAGGATGATTTAGATGTTAGAAGCCACGAGTATGATATTGTCCACTTTGAGCATAAGCTCTCGTGACTTTGGTTTTGGTTTCTCTAGCCTCATACCAATGGAGATATATTCCTTACTTATGAACCCATGATCATCACCTTAATTAGCCAATGTAGGACTCTCTCCCAACAATCCTCCCTTCGAACAAAGTACACCATAGAGCCTCTCCTGAGACCTATGGAGCCCTCGAAAATCTTCCCCTTAATCGAGGCTTGACTCCTTTTCTACGGTCCTTGAACAAAGAGCACCATTTGTTTGACACTTGAGTCACTTTTGACTCTATTCGAAGCTTACAACTTCTTTGTTCGACATTTGAGGATTCTATTGACATGGCTAAGTTAAGGGCATGACTCTAATACCATGTTAGAAACCACGAACCTCCACGATGGTATGATGTTGTTCACTTTGAGCATAAGCTCTCGTGTCTTTGCTTTTTGTTTCCCCAAAAGGCCTCATACCATTGGAGATATATTTCTTATTTATAAACATATGATCATACCCTTAATTAGTCAACGAGGAACTCTCTCCCCAACCGTCCTCAACATTAAATATCATCTAAGCTTTCTTATAGCCTATGCTGCTGGGAATTGCAAAATTGTATATAGATTGCATAAATTGTTTGATCATGGCGTGTTTGGTACTGATAATTTTCTTTGTTGAGTTATTGGTTTTTTGCTCACCAATCGGTTGCATTATTTTCATTTGCATGGTATCTGTGAGATCCCACATCGGTTAGAGAGGGAAAAGAAGCGTTCATTGTAAGGGTGTGGAAACCTTTCCCTAGTAGACTGTTTTAGAACCATGAGGCCGACAACGATACATAATGGGCTAAAGTAGGACAATATCTGCTAGCAGTGGCCTTGAGTTGTTACAAATGATATCAGAGCCAGACACTAGGCGCTGTGTCAGCGAGTACGTTGGGCCTCAGGAAGGGGGGGGGGGTGGATTGTGAGATCACACATCGGTTGGAGAAGGGAACGTAGCATTCCTTTTACCCTTCCCTAGAGACGCGTTTTAAAATCATGAGGCTGACGGCGATACATAACGGACCAAAGCAAACAATATTTGCTAGCGGTGGGCTTGGATTATTACAAATAGTATTAGAGCCAGTTACCAGGCAACATGCCAGCGAGGACGTTGGGCCTCCAAAGGGGGTGGATTGCGAGATCCTACATCGGTTGGAGAGGAGAACGAAACATTTCTTATAAGGGTGTGGAAACCTCTCCGTAGTAGACGTGTTCTAAAATCGTGAGGCTGATGGCGATACATAACGGGCCAAAGCGAACAATATCTGCTAGTCGTGAGCTTGAACTATGTTGCAAATGGTATCAGAGCTAGTCACTGGGCAGTCTATCAGTGAGGACGTTGGGCTTCCAAGGAGGGTGGATTGTGAGATCCCACATCGATTGGAGATGGGAACGAAACATTCCTTATAAGGGTGTGGAAACCTCTCCCTAGTAGACGCGTTTTAAAACCATGAGACTAACCGCGATACGTAACGTGCCAAAGCAGACAATATCCGCTATCGGTGGGTTTGAGTTATTACAAATGGTATCAAAGCCGCACATCGGGCGGTGTGCCAGTGAGGACGTTGGCTCCTAAAGGGAGTGGATTGTGAGACCCCGCATTGGTTGGAGAGGGGAACAAAACATTCCTTAGAAGGATGTGGAAACCTCTCTATAGTAAACACATTTTAAAACCTCAAGGGGAAGTCCATAAGGGAAAGCCCAAAGATGACGATACTTGCTAGCGGTGGGATTAGACTATTACACTATTTTAAGTCCGGTGTCAAAATATGTCATAACGTCTCTCTCCTCCTTTCAATCAGGATGATTGTTTAATGTTTCAAACTGTTCTTCAATCCAAGAACTCCAAACCTTAAATTCTGAGAATAGATATCTATATCAAACGATACTCACTTCTTGACAGCTTATGAATGGATGTTCTTGTAGTTTCCACAAAGCCATTTGCATGGCTGATGAAGTATCCATATCCAAGCATCATATGGTCAATCACTTAGACATTTTTTCTGGCAAACGATTTCCAAGAAGGCTGTTCTCGCAGTTCATTGGTTCGTATCCGATCTTGTTATATGCAAATCCTAGTTTCGGTGCACCGATGATGGACGTGCAAGAACCGGAAATAGTTCGGTATGTATTTCATTTGTAACTTTTTTCTTGAAATGTTCATATCATTTTCTTAACATCACAATGAAGAGGGCTGCCATGACCATCCATCAAAAGTGCTTTACATGTTCTCATTTGGAATTGTTGTTTAAATTTTGAAGCTTTCAGGACGCTAAAGCTCGACAGTGGAGTTCGGATTCAAGGTAGAATTTCTTTGTTTAAAATCTCAAGATTTAATAAATCTTTTTGTAACGATCCAAGCCCACCGCTAGTAGATATTGTCTTCTTTGGGCTTTCCCTTTCGGGCTTCCCCTAAAGGCTTTAAAACACGTATAATAGGGGAAGGTTTCCACACCCTTATAGAGGATGTTTTGTTCTCCTCCCCAACCAATGTGGGACATCACAATCCACCCCCCTTCGGGGCCCAGCGTCCTCGCTGGCACTCATTCCTTTCTCCAATCGATGTGGGACCACCACCAAATCCACCCCCTTTGGGGTCCAGCGTCCTTATTGGCACACCACCTCGTGTCTATCCCCCTTCGGGAAACAGTGAGAAAGCTGGCACATCATCCGGTGTCTAACTCTGATGCCATTTGTAACGACCCAGGCTCACCGCTAGCAGATATTGTCCTCTTTGGGCTTTTCTTTTCGGGCTTCCCCTCAAGGCATTAAAATGCGTCTGCTAGGGGAAGGTTTCCACACCCTTATAAAGGGTGTTTTGTTCTCCTCCCCAACCAATGTGGGACATCACAATTGTTTATAGATGAACATGTTTGGTTGTAACGTAGCAGGCTCGTTTTATGGCATTTTGAATATGGTATAGCTTGAGTTCCTTCTTCATACTGAATTGTGATGAAAACTACATTATTTGTGTTCAATGATTGTTCTATATAATTCTTGAATATGGAAACAAATAAGGTCTATGATTAATGATTTCACTGTACTAACATTTTTAGTTCCAATTAATAGAAGTTCTTGAGGGAGATGGAGCAGAAGCACATGAAGGAGACTTGGTGGAGTTCAATTATGTCTGCAGGCGTTCAAATGGATACTTCGTTCATAGGTAATGTATTTGTCGGAAGCATTCCTTGTAAGTGTGTGGAAACCTCTCTCTAGCAGACGCGTATTAAAAACCTTGAGGCAAAGCCCGAAAAGGAAAGTCCAAAGAGGACAATATCTACTAGCGGTGGGTTTGAACTGATGCAAATAGTATCAGAGCTAGACACCGAGCGGTGTGCCAGCAAGGACGTTGGGCCCCCAAGGGGGTGGGGATTGTGAGATTCTACATTGGTTGGAGAGGGGAATGAAACATTTCTTATAAGAGTGTGAAAACCTCTCTCTAGCAGACCCGTTTTAAAAACTTTGAGGCGATACTCGAAAAGGAAAGTCCAAAGAGGACAATATCGGTTAGCGGTGGGCTTGAGCTGTTACAAATGGTATCAGAGCCAAACACCGAGCGGTGTGCCAACATGGACATTGGCCCCAAGGGGGGTGGATTGTGAGATCCCACATTGATTGGAGATGGGAACGAAACATTTCTTATAAGGGTGTGGAAACCTCTCCCTATCAGACACGTTTTAAAAACCTTGAGGTGAAACCCAAAAAGGAAAGTGGAAAGAGGACAATATCTGCTAGCGGTGGGCTTGAGCTGTTACAAATGGTATCAGAGCTAGACACCAACTGGTATGTCAGTGGGGACACTGTGTCCCCAAAAGGGGTAGATTGTGAGATCCCACATTGGTTGGAGAGGGGAACGAAACATTTCTTATAAGGGTGTGGAAACCTCTCTCTAACAGACGCGTTTTAAAAACTTCGAGGGGAAGGCCGAAAGGAAGTTACAATGTAATCCCTAAAGTACAAGGACTAAATCATTCCCATTGCCTCTGTTATCATATTCACAGCACGGTAGATCAATTCAGTGGAGAGAGCACACCAGTAATCCTGCCTTTGAAAGAAAACCAGGTAATCTCTTCTTTTACATCGGTTCTTCAAGAAAACTATGGGGGCGATAAACTTTCGAGAATTTTGTATAGATATTAATTATGGTCGTTCTATTTTTCGATGTGCAATGATCTGTTTACGAGTGTGTAATTGTCGATAGCGGATATGCTTGTTGTCGATAGCGGATAGCTTCAGTTTATGCAGCCTATCACTAGAACTTTGCTGGTTTTTGGAAGATCCTCTGTTAGTTAGCTTGTATAATCTTCTCTTTTTAAAAACGCTTAGTTTGCTCGATCAGCTTTCGAGTTTTGTATCATTCAATGATTGGATCAGCTTTCGAGTTTTTGGCGTTTATTACTGATGATATTTGTTTCTTACAGATAATAGAGGGCTTGAAAGAGGTTCTGGTTGGCATGAGAGTTGGAGGTATTGTATGGATATTCAATCATCTTTACTCAGTTTGTTCTTATGCTTATTTACCCTTAGCCAATCAAGCTGTTCATGGCTTTTATTATGCAGAAACCTCTTCAACTTCTTTGGATTAGCCTTGTATTTTAGGTTTCTATTGTCTTAACTTCTACCTTTTATATCGCTTCGTTTGCTTCACGACTTACGGCTGAAATAGGAAACGAGGAACATAAACGTTACTGGATCACCTTTAATCTTGCACATCTGTTAATGGGATATTTCTCATATGTGAGATCCCACATCGGTTGGAGTGAGAAATGAAGCATTCCTTATAAGGGTGTGGAAACCTTTGCCTAACAGACGCATCTTAAAACCGTGAGGCTAATGGCAATACGTAATGGGCCAAAATGGACAATATCTGCTAGGCGTGGGCTTGGGTTGTTACAAATAGTGTTAGAGTCATACACGGGGCAGTGTGTTAGTGAGGACGCTGGGCCCCCAAGAGGGTTAATTGTGAGATCTCACATCGATTGGAGAGGGGAACGAAGCATTCCTTATAAGGGTGTGGAAGCCTCTACCTAGTAAGAGTGTTTTAAAACTGTGAGGCTAACGATGGTACGTAACGGGCCAAAATGGACATATCTGCCAGCGGTGGGCTTGGGCTGTTACAAATGGTATCAGAGTCAGATATCGGGCAATGTGCCAGCGAGGACACGTTAGGCCCCTAAGGGGGGTGGATTGTGAGATCCCACATCAGTTGGAGAGGAGAACGAAGCATTCTTATGTGGAAACCTCTGCCTAATAGACACGTTTTAAAACCGTCAAGGAGGTCCTTTTCTTTCTCCAGACCGATGACTCGCTTGGCTGTATGGGCAGGTTCTCCCTCGCTGCTGCGTTCTGTTAGGCTATGGATTATAGAAACAAATGTAGTTGAATGAGACAGCAGGCAGGTTACACGTTCCACTGTGCCGAGATATGAGGTGCAAGTGGTGATGATCACCCCAGGGTATGCGCGGGAGCCCTTGACAGGCACTCCAGGACCTGCCAACGGTCACGAGGCTATACGTAACGGGGCTAAAACGGACAATATTTGTTAACGGTGGGCTTGTGGTGTTACAAATGGTATCAGAGTCAGATATCGGGCGGTGTGCCAGTGTAGACATAGAGCCCCAAAAGGGGATAGATTGTGAGATCCTACATCGGTTGGAGAGGGGAACGAAACATTCCTTATAAGGATGTGGAAACCTTTGCTTAGTAAACACGTTTTAAAACCGTGAACTTGACGGCGATACGTAACGGGTCAAAACGGATATATCTGCTAGCGGTGGGCTTGGGCTGTTACAAATGGTATCAAAGTCAAACATCGGTCAGTGTGCCAACAAGGACACGTTAGGCCCCCAATGGGGGTGGATTGTGAGATCTCACATCAGTTGGAGAGGGGAATGAAGCATTCCTTATAAGAATGTGGAAACCTCTACCTAGTAGACACGTTTTAAAACCGTGAGGCTGACGGCGATACATAACGGGCTAAAACGGACAATATTTATTAACGGTGGGCTTGTGGTGTTACAAATGGTATCAGAGTCAGACACCGGACGGTGTGCCAGTGTAGACACAGAGCCCACAAAGTGGGTGGATTGTGAAATCCTACATCGGTTGGAGAGGGGAACGAAACATTCCTTATAAGGGTGTGGAAACCTTTGCCTAACAGACACATTTTAAAACTGTGAACCTGATAGCAATACGTTTATTATTTGTTATCAGGAAAAAGAAGAGCACTTATCCCTCCGTCAGTGGGTTACATAAATGAGAATTTGAACCCAATTCCTGAAGAGGTAAAGCAAAAAAGTTCTTTCTCTAATCAGCATTAACATTATAGATTATCCATCCTAATCACTTGTTTTGGTCATATTATTTCTTAAGCATGACAACGTTGGTCGATAAAATTAAGTTCGCTTTGTTGCAGTTTGGTCCTCGACGTAGTCTTTTATCGCATCGGAACGAGCCCTTGATATTTGAGGTGCAACTTTTGAAAGTTCAATGAGTATCATTCTCCGTCGATATTGACTTAAACCCTTGTATATTCAATGTTGATATTTGAAAATATGAGTAGAAAGTTCTTTCATAGCGGGCTCACGTCATCGTTATGTGGTGTGTCCCTTGCCATTATTCAGCCTATGACCCTTCGACTGTAATCAGAGGCCGAACGAATGTGTAATTGCTATTAAAAGATGGAAAGTCAGAAGACAAATGTTGATATTTTCTTTGTTGTATCTGAAAAGAACATACTCTCGATGATCATAGCCTTGACTTTCTATGTTATTAGTACAATACAGGAGCGTTCTAACAGGCTTGCTACCTTATTATTATTCCGAACTTGACACCCATCAAATCATTGGCCCGGGGTGCTCCTGTTGGCCTAATTACACGTGTT

mRNA sequence

CCATAGAATCCTCTCCTTTTCTTCCTCATCCACTTCGTTTCAACTTATCCATTAACGTCATCGTCTTCGCAACTTTTCAGGCTGTGCCATGGGAGTTCTCTCGTTCTGGAGCTTGTTTCGCTCTCCTTCCGCCGTCAAATTTTCTAGTTTCCACAAAGCCATTTGCATGGCTGATGAAGTATCCATATCCAAGCATCATATGGTCAATCACTTAGACATTTTTTCTGGCAAACGATTTCCAAGAAGGCTGTTCTCGCAGTTCATTGGTTCGTATCCGATCTTGTTATATGCAAATCCTAGTTTCGGTGCACCGATGATGGACGTGCAAGAACCGGAAATAGTTCGGTATATAATAGAGGGCTTGAAAGAGGTTCTGGTTGGCATGAGAGTTGGAGGTATTTTTGGTCCTCGACGTAGTCTTTTATCGCATCGGAACGAGCCCTTGATATTTGAGGTGCAACTTTTGAAAGTTCAATGAGTATCATTCTCCGTCGATATTGACTTAAACCCTTGTATATTCAATGTTGATATTTGAAAATATGAGTAGAAAGTTCTTTCATAGCGGGCTCACGTCATCGTTATGTGGTGTGTCCCTTGCCATTATTCAGCCTATGACCCTTCGACTGTAATCAGAGGCCGAACGAATGTGTAATTGCTATTAAAAGATGGAAAGTCAGAAGACAAATGTTGATATTTTCTTTGTTGTATCTGAAAAGAACATACTCTCGATGATCATAGCCTTGACTTTCTATGTTATTAGTACAATACAGGAGCGTTCTAACAGGCTTGCTACCTTATTATTATTCCGAACTTGACACCCATCAAATCATTGGCCCGGGGTGCTCCTGTTGGCCTAATTACACGTGTT

Coding sequence (CDS)

ATGGGAGTTCTCTCGTTCTGGAGCTTGTTTCGCTCTCCTTCCGCCGTCAAATTTTCTAGTTTCCACAAAGCCATTTGCATGGCTGATGAAGTATCCATATCCAAGCATCATATGGTCAATCACTTAGACATTTTTTCTGGCAAACGATTTCCAAGAAGGCTGTTCTCGCAGTTCATTGGTTCGTATCCGATCTTGTTATATGCAAATCCTAGTTTCGGTGCACCGATGATGGACGTGCAAGAACCGGAAATAGTTCGGTATATAATAGAGGGCTTGAAAGAGGTTCTGGTTGGCATGAGAGTTGGAGGTATTTTTGGTCCTCGACGTAGTCTTTTATCGCATCGGAACGAGCCCTTGATATTTGAGGTGCAACTTTTGAAAGTTCAATGA

Protein sequence

MGVLSFWSLFRSPSAVKFSSFHKAICMADEVSISKHHMVNHLDIFSGKRFPRRLFSQFIGSYPILLYANPSFGAPMMDVQEPEIVRYIIEGLKEVLVGMRVGGIFGPRRSLLSHRNEPLIFEVQLLKVQ

Homology

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BLAST of Carg24741 vs. NCBI nr
Match: XP_022937354.1 (peptidyl-prolyl cis-trans isomerase FKBP16-1, chloroplastic isoform X5 [Cucurbita moschata])

HSP 1 Score: 221.5 bits (563), Expect = 1.7e-54
Identity = 124/184 (67.39%), Postives = 125/184 (67.93%), Query Frame = 0


Query: 1   MGVLSFWSLFRSPSAVKFSSFHKAICMADEVSISKHHMVNHLDIFSGKRFPRRLFSQFIG 60
           MGVLS WSLFRSP AVKFSSFHKAICMADEVSISKHHMVNHLDIFSGKRFPRRLFSQFIG
Sbjct: 1   MGVLSLWSLFRSPCAVKFSSFHKAICMADEVSISKHHMVNHLDIFSGKRFPRRLFSQFIG 60

Query: 61  SYPILLYANPSFGAPMMDVQEPEIVRY--------------------------------- 120
           SYPILLYANPSF APMMDVQEPEIVR+                                 
Sbjct: 61  SYPILLYANPSFSAPMMDVQEPEIVRFQDAKARQWSSDSSTVDQFSGESTPVILPLKENQ 120

Query: 121 IIEGLKEVLVGMRVGG----------------------IFGPRRSLLSHRNEPLIFEVQL 130
           IIEGLKEVLVGMRVGG                       FGPRRSLLSHRNEPLIFEVQL
Sbjct: 121 IIEGLKEVLVGMRVGGKRRALIPPSVGYINENLNPIPEEFGPRRSLLSHRNEPLIFEVQL 180

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BLAST of Carg24741 vs. NCBI nr
Match: XP_023534865.1 (peptidyl-prolyl cis-trans isomerase FKBP16-1, chloroplastic isoform X4 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 215.7 bits (548), Expect = 9.2e-53
Identity = 121/184 (65.76%), Postives = 124/184 (67.39%), Query Frame = 0


Query: 1   MGVLSFWSLFRSPSAVKFSSFHKAICMADEVSISKHHMVNHLDIFSGKRFPRRLFSQFIG 60
           MGVLSFWS FRSPSAVKFSSFHK ICMADEVSISKHH VNHLDIFS KRFPRRLF+QFIG
Sbjct: 1   MGVLSFWSSFRSPSAVKFSSFHKTICMADEVSISKHHTVNHLDIFSVKRFPRRLFAQFIG 60

Query: 61  SYPILLYANPSFGAPMMDVQEPEIVRY--------------------------------- 120
           SYPILLYANPSFGAPM+DVQEPEIVR+                                 
Sbjct: 61  SYPILLYANPSFGAPMIDVQEPEIVRFQDAKARQWSSDSSTIDQFSGESTPVILPLKQNQ 120

Query: 121 IIEGLKEVLVGMRVGG----------------------IFGPRRSLLSHRNEPLIFEVQL 130
           IIEGLKEVLVGMRVGG                       FGPRRSLLSHRNEPLIFEVQL
Sbjct: 121 IIEGLKEVLVGMRVGGKRRALIPPSVGYINENLNPIPEEFGPRRSLLSHRNEPLIFEVQL 180

[Close]

BLAST of Carg24741 vs. NCBI nr
Match: XP_022976015.1 (peptidyl-prolyl cis-trans isomerase FKBP16-1, chloroplastic isoform X4 [Cucurbita maxima])

HSP 1 Score: 214.2 bits (544), Expect = 2.7e-52
Identity = 121/184 (65.76%), Postives = 123/184 (66.85%), Query Frame = 0


Query: 1   MGVLSFWSLFRSPSAVKFSSFHKAICMADEVSISKHHMVNHLDIFSGKRFPRRLFSQFIG 60
           MGVLSFWSLFRSPSAVKF SFHK I MADEVSISKHHMVNH+D FS KRFPRRLFSQFIG
Sbjct: 1   MGVLSFWSLFRSPSAVKFPSFHKTIYMADEVSISKHHMVNHVDFFSVKRFPRRLFSQFIG 60

Query: 61  SYPILLYANPSFGAPMMDVQEPEIVRY--------------------------------- 120
           SYPILLYANPSFGAPMMDVQEPEIVR+                                 
Sbjct: 61  SYPILLYANPSFGAPMMDVQEPEIVRFQDAKARQWSSDSSTVDQFSGESTPVILPLKENQ 120

Query: 121 IIEGLKEVLVGMRVGG----------------------IFGPRRSLLSHRNEPLIFEVQL 130
           IIEGLKEVLVGMRVGG                       FGPRRSLLSHRNEPLIFEVQL
Sbjct: 121 IIEGLKEVLVGMRVGGKRRALIPPSMGYINENLNPIPEEFGPRRSLLSHRNEPLIFEVQL 180

[Close]

BLAST of Carg24741 vs. NCBI nr
Match: XP_022937350.1 (peptidyl-prolyl cis-trans isomerase FKBP16-1, chloroplastic isoform X1 [Cucurbita moschata])

HSP 1 Score: 208.8 bits (530), Expect = 1.1e-50
Identity = 124/213 (58.22%), Postives = 124/213 (58.22%), Query Frame = 0


Query: 1   MGVLSFWSLFRSPSAVKFSSFHKAICMADEVSISKHHMVNHLDIFSGKRFPRRLFSQFIG 60
           MGVLS WSLFRSP AVKFSSFHKAICMADEVSISKHHMVNHLDIFSGKRFPRRLFSQFIG
Sbjct: 1   MGVLSLWSLFRSPCAVKFSSFHKAICMADEVSISKHHMVNHLDIFSGKRFPRRLFSQFIG 60

Query: 61  SYPILLYANPSFGAPMMDVQEPEIVR---------------------------------- 120
           SYPILLYANPSF APMMDVQEPEIVR                                  
Sbjct: 61  SYPILLYANPSFSAPMMDVQEPEIVRTLKLDSGVRIQEVLEGDGAEAHEGDLVEFNYVCR 120

Query: 121 ----------------------------YIIEGLKEVLVGMRVGG--------------- 130
                                        IIEGLKEVLVGMRVGG               
Sbjct: 121 RSNGYFVHSTVDQFSGESTPVILPLKENQIIEGLKEVLVGMRVGGKRRALIPPSVGYINE 180

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BLAST of Carg24741 vs. NCBI nr
Match: XP_023534862.1 (peptidyl-prolyl cis-trans isomerase FKBP16-1, chloroplastic isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 203.0 bits (515), Expect = 6.2e-49
Identity = 121/213 (56.81%), Postives = 123/213 (57.75%), Query Frame = 0


Query: 1   MGVLSFWSLFRSPSAVKFSSFHKAICMADEVSISKHHMVNHLDIFSGKRFPRRLFSQFIG 60
           MGVLSFWS FRSPSAVKFSSFHK ICMADEVSISKHH VNHLDIFS KRFPRRLF+QFIG
Sbjct: 1   MGVLSFWSSFRSPSAVKFSSFHKTICMADEVSISKHHTVNHLDIFSVKRFPRRLFAQFIG 60

Query: 61  SYPILLYANPSFGAPMMDVQEPEIVR---------------------------------- 120
           SYPILLYANPSFGAPM+DVQEPEIVR                                  
Sbjct: 61  SYPILLYANPSFGAPMIDVQEPEIVRTLKLDSGVRIQEVLEGDGAEAHEGDLVEFNYVCR 120

Query: 121 ----------------------------YIIEGLKEVLVGMRVGG--------------- 130
                                        IIEGLKEVLVGMRVGG               
Sbjct: 121 RSNGYFVHSTIDQFSGESTPVILPLKQNQIIEGLKEVLVGMRVGGKRRALIPPSVGYINE 180

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BLAST of Carg24741 vs. TAIR10
Match: AT4G26555.1 (FKBP-like peptidyl-prolyl cis-trans isomerase family protein)

HSP 1 Score: 61.6 bits (148), Expect = 4.0e-10
Identity = 34/63 (53.97%), Postives = 38/63 (60.32%), Query Frame = 0


Query: 88  IIEGLKEVLVGMRVGG----------------------IFGPRRSLLSHRNEPLIFEVQL 129
           +IEGLKEVLVGM+ GG                       FGPRRSLLSH NEPL+FE+QL
Sbjct: 144 VIEGLKEVLVGMKAGGKRRALIPPSVGYINETLKPIPEEFGPRRSLLSHANEPLVFEIQL 203

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BLAST of Carg24741 vs. Swiss-Prot
Match: sp|Q944B0|FK161_ARATH (Peptidyl-prolyl cis-trans isomerase FKBP16-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=FKBP16-1 PE=2 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 7.3e-09
Identity = 34/63 (53.97%), Postives = 38/63 (60.32%), Query Frame = 0


Query: 88  IIEGLKEVLVGMRVGG----------------------IFGPRRSLLSHRNEPLIFEVQL 129
           +IEGLKEVLVGM+ GG                       FGPRRSLLSH NEPL+FE+QL
Sbjct: 144 VIEGLKEVLVGMKAGGKRRALIPPSVGYINETLKPIPEEFGPRRSLLSHANEPLVFEIQL 203

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BLAST of Carg24741 vs. TrEMBL
Match: tr|A0A0A0K4G4|A0A0A0K4G4_CUCSA (Peptidylprolyl isomerase OS=Cucumis sativus OX=3659 GN=Csa_7G276690 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 5.2e-28
Identity = 89/190 (46.84%), Postives = 94/190 (49.47%), Query Frame = 0


Query: 27  MADEVSISKHHMVNHLDI----FSGKRFPRRLFSQFIGSYPILLYANPSFGAPMMDVQEP 86
           M ++VSISKH MVNHLD+    FS KRFPRRLFSQFIG YPILLYA PSF APMMD+QEP
Sbjct: 1   MDEDVSISKHPMVNHLDVRNASFSVKRFPRRLFSQFIGLYPILLYAYPSFSAPMMDMQEP 60

Query: 87  EIVR-------------------------------------------------------- 129
           +IVR                                                        
Sbjct: 61  DIVRTLKLDSGVRIQEVFEGDGAEAHEGDMVEFNYVCRRSNGYFVHSTVDQFSGESTPVI 120

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BLAST of Carg24741 vs. TrEMBL
Match: tr|A0A0B2NXM9|A0A0B2NXM9_GLYSO (Peptidylprolyl isomerase (Fragment) OS=Glycine soja OX=3848 GN=glysoja_028447 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 3.6e-13
Identity = 50/131 (38.17%), Postives = 67/131 (51.15%), Query Frame = 0


Query: 40  NHLDIFSGKRFPRRLFSQFIGSYPILLYANPSFGAPMM-DVQEPEIVRYI---------- 99
           N + I +  +F RR+  QF+G   ++ YA+P+  AP+M D++EPE++R +          
Sbjct: 33  NRVSILTVDKFSRRMVLQFLGFNQVICYASPALAAPIMPDIKEPEVIRTVDQFSGESNPV 92

Query: 100 ---------IEGLKEVLVGMRVGG----------------------IFGPRRSLLSHRNE 129
                    I GLKEVL GMRVGG                       FGPRRSL  H  E
Sbjct: 93  ILWMRTRQMIVGLKEVLTGMRVGGKRRALIPPSVGYVNENLQPMPEEFGPRRSLFPHAQE 152

[Close]

BLAST of Carg24741 vs. TrEMBL
Match: tr|A0A2H5P5Z8|A0A2H5P5Z8_CITUN (Peptidylprolyl isomerase OS=Citrus unshiu OX=55188 GN=CUMW_106990 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 2.4e-12
Identity = 70/212 (33.02%), Postives = 84/212 (39.62%), Query Frame = 0


Query: 1   MGVLSFWSLFRSPSAVKFSSFHKAICMADEVSISKHHMVNHLDIFSGKRFPRRLFSQFIG 60
           MG L+  +    P A K SS  K       VS + H   + + +   KR PRR   QFIG
Sbjct: 1   MGTLAIQASLLFPCASKSSSSIKRGRPNGGVSQNLHATFSSVTV---KRLPRRTLLQFIG 60

Query: 61  SYPILLYANPSFGAPMMDVQEPEIVR---------------------------------- 120
              +LL+ NP F APM +++EPE +R                                  
Sbjct: 61  FSSMLLHVNPDFAAPMPEMKEPEAIRTLKLASGVRIQEIIEGEGPEASEGDIVQLNYVCR 120

Query: 121 ----------------------------YIIEGLKEVLVGMRVGG--------------- 129
                                        II+GLKEVLVGM+VGG               
Sbjct: 121 RSNGYFVHSTVDQFSGESAPVILPLDENKIIKGLKEVLVGMKVGGKRRALIPPSAGYINE 180

[Close]

BLAST of Carg24741 vs. TrEMBL
Match: tr|V4TZB3|V4TZB3_9ROSI (Peptidylprolyl isomerase OS=Citrus clementina OX=85681 GN=CICLE_v10009425mg PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 8.9e-12
Identity = 70/212 (33.02%), Postives = 83/212 (39.15%), Query Frame = 0


Query: 1   MGVLSFWSLFRSPSAVKFSSFHKAICMADEVSISKHHMVNHLDIFSGKRFPRRLFSQFIG 60
           MG L+  +    P A K SS  K       VS +     + L +   KR PRR   QFIG
Sbjct: 12  MGTLAIQASLLFPCASKSSSSIKGGRPNGGVSQNLFAKFSSLTV---KRLPRRTLLQFIG 71

Query: 61  SYPILLYANPSFGAPMMDVQEPEIVR---------------------------------- 120
              ++L+ NP F APM D++EPE +R                                  
Sbjct: 72  FSSMVLHVNPDFDAPMPDMKEPEAIRTLKLASGVRIQEIIEGEGPEASEGDIVQLNYVCR 131

Query: 121 ----------------------------YIIEGLKEVLVGMRVGG--------------- 129
                                        II+GLKEVLVGM+VGG               
Sbjct: 132 RSNGYFVHSTVDQFSGESAPVILPLDENKIIKGLKEVLVGMKVGGKRRALIPPSVGYINE 191

[Close]

BLAST of Carg24741 vs. TrEMBL
Match: tr|A0A251NJC2|A0A251NJC2_PRUPE (Peptidylprolyl isomerase OS=Prunus persica OX=3760 GN=PRUPE_6G028700 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 8.9e-12
Identity = 69/212 (32.55%), Postives = 87/212 (41.04%), Query Frame = 0


Query: 1   MGVLSFWSLFRSPSAVKFSSFHKAICMADEVSISKHHMVNHLDIFSGKRFPRRLFSQFIG 60
           M  LSF SL + PS ++  S+ +     + V+ + H     L   + KR PRRL  QF+G
Sbjct: 1   MEALSFRSLLQLPSTLRTPSYVEKEQPKNTVAKNLH---ERLHSSAPKRLPRRLLLQFMG 60

Query: 61  SYPILLYANPSFGAPMMDVQEPEIVR---------------------------------- 120
             PIL  ++P F AP+  ++EPE++R                                  
Sbjct: 61  FSPIL--SHPVFAAPVPGMKEPEVIRTLKLPSGVRIQEIVEGQGSAANEGDLVEINYVCR 120

Query: 121 ----------------------------YIIEGLKEVLVGMRVGG--------------- 129
                                        II GLKEVLVGMR+GG               
Sbjct: 121 RTNGYFVHSTVDQFSGESTPVILPLDEKQIIAGLKEVLVGMRIGGKRRALIPPYVGYINE 180

The following BLAST results are available for this feature:

BLAST of Carg24741 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022937354.1	1.7e-54	67.39	peptidyl-prolyl cis-trans isomerase FKBP16-1, chloroplastic isoform X5 [Cucurbit...	[more]
XP_023534865.1	9.2e-53	65.76	peptidyl-prolyl cis-trans isomerase FKBP16-1, chloroplastic isoform X4 [Cucurbit...	[more]
XP_022976015.1	2.7e-52	65.76	peptidyl-prolyl cis-trans isomerase FKBP16-1, chloroplastic isoform X4 [Cucurbit...	[more]
XP_022937350.1	1.1e-50	58.22	peptidyl-prolyl cis-trans isomerase FKBP16-1, chloroplastic isoform X1 [Cucurbit...	[more]
XP_023534862.1	6.2e-49	56.81	peptidyl-prolyl cis-trans isomerase FKBP16-1, chloroplastic isoform X1 [Cucurbit...	[more]

BLAST of Carg24741 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G26555.1	4.0e-10	53.97	FKBP-like peptidyl-prolyl cis-trans isomerase family protein	[more]

BLAST of Carg24741 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q944B0\|FK161_ARATH	7.3e-09	53.97	Peptidyl-prolyl cis-trans isomerase FKBP16-1, chloroplastic OS=Arabidopsis thali...	[more]

BLAST of Carg24741 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K4G4\|A0A0A0K4G4_CUCSA	5.2e-28	46.84	Peptidylprolyl isomerase OS=Cucumis sativus OX=3659 GN=Csa_7G276690 PE=4 SV=1	[more]
tr\|A0A0B2NXM9\|A0A0B2NXM9_GLYSO	3.6e-13	38.17	Peptidylprolyl isomerase (Fragment) OS=Glycine soja OX=3848 GN=glysoja_028447 PE...	[more]
tr\|A0A2H5P5Z8\|A0A2H5P5Z8_CITUN	2.4e-12	33.02	Peptidylprolyl isomerase OS=Citrus unshiu OX=55188 GN=CUMW_106990 PE=4 SV=1	[more]
tr\|V4TZB3\|V4TZB3_9ROSI	8.9e-12	33.02	Peptidylprolyl isomerase OS=Citrus clementina OX=85681 GN=CICLE_v10009425mg PE=4...	[more]
tr\|A0A251NJC2\|A0A251NJC2_PRUPE	8.9e-12	32.55	Peptidylprolyl isomerase OS=Prunus persica OX=3760 GN=PRUPE_6G028700 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR023566	PPIase_FKBP

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg24741-RA	Carg24741-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR43811:SF14	PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKBP16-1, CHLOROPLASTIC	coord: 26..87
None	No IPR available	SUPERFAMILY	SSF54534	FKBP-like	coord: 87..128
IPR023566	Peptidyl-prolyl cis-trans isomerase, FKBP-type	PANTHER	PTHR43811	FAMILY NOT NAMED	coord: 26..87

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg24741	Cla003333	Watermelon (97103) v1	carwmB0428
Carg24741	Csa7G276690	Cucumber (Chinese Long) v2	carcuB0465
Carg24741	ClCG09G021550	Watermelon (Charleston Gray)	carwcgB0423
Carg24741	CSPI07G11900	Wild cucumber (PI 183967)	carcpiB0470
Carg24741	Cucsa.240710	Cucumber (Gy14) v1	carcgyB0498
Carg24741	CmaCh09G010300	Cucurbita maxima (Rimu)	carcmaB0601
Carg24741	CmoCh09G010320	Cucurbita moschata (Rifu)	carcmoB0586
Carg24741	Lsi02G018070	Bottle gourd (USVL1VR-Ls)	carlsiB391
Carg24741	Cp4.1LG06g08290	Cucurbita pepo (Zucchini)	carcpeB0608
Carg24741	CsGy7G011100	Cucumber (Gy14) v2	carcgybB0441
Carg24741	MELO3C028909.2	Melon (DHL92) v3.6.1	carmedB0441
Carg24741	CsaV3_7G023830	Cucumber (Chinese Long) v3	carcucB0465
Carg24741	Cla97C09G182960	Watermelon (97103) v2	carwmbB0455
Carg24741	Bhi09G001510	Wax gourd	carwgoB0519

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg24741	Silver-seed gourd	carcarB088
Carg24741	Cucurbita maxima (Rimu)	carcmaB0602
Carg24741	Cucurbita moschata (Rifu)	carcmoB0587
Carg24741	Cucurbita pepo (Zucchini)	carcpeB0607