Carg24737-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg24737-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Unknown protein
Location	Cucurbita_argyrosperma_scaffold_259 : 119422 .. 120478 (+)
Sequence length	429

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTACAAAGGAGATTTGCAATACAAAGATCCTTGAGACGAAAACTTCCTCTGCAGGGTCGATTGAATCACCACCGGCTTTTCCGACTTGGGGTCATCGGTAGCAGCTTTCCCCACTTCAACACTTCGAATCTCCTCGAGCATGGCGACTATACTTTTCATGGGGGGTCGATCGTCGGACTTGACGCTGACACAGATCAACGCGACGTCTAGGGTTTGAAGAATTTCGCGCATTGTGGGTTCGGTTCTTTCTCTAAGCTTCGAGTCTAAAATGTCGGCTGGGTTTTTCTTTGTGGCTAAATGGTCTCTAACCCATTGCGCCAAATTGCCTTCTCCAGGTAATGTCGGGTCCAGAGGGTGCCGCCCTGTTAGAACCTCCATTACCACTATACCGAAGCTGTACACATCGCTCTTCTCTGAGACTGTCAATATCGACCCATGTTCTGTAATCATCAGGTAATTATGAATCCATGGGGTTTATTTGCCGAAGGGTTTGGAAAGGGGGGGTTAGAAATGAACATACCTGGAGCCATGTACCCGAAAGAGCCAGCAAGTTGTCTGAGTATTGGCTTCTTTGAAGCATCATTGCTGTTGTTTGTACTCACATTACTGGCGAGACCAAAGTCGGCTAGGTATGGCTCAAAGTCATGGCCGAGCAGGACATTCAGTGTTTTCACATCGCCATGTACGATTGGTGGAGTACAATCATGGTGAAGATATGCTAAAGCATGAGCCACTCCTAAGAGGATGTCGTATCTGGCCTCCCATTCTGCTCCTCCTTTTCCATTGTCATGGATAAAAGAGCTCAAGCTTCCATTTGGAAGATAATCATAAAACAGGAGCTTCAAATTCCTGTGGGATCCCCAACCCAGTAGCCTTATTATGTTCTTGTGTCGAATTAATCCCAAAGTACGGATTTCAGAGTTGAAGCCTCCAGATTCGTCGGTTGACCACATTTTCTTCACTGCCACTGTTTTCCCTTTTGGGGTTGTGATTCTGTACACGGCACCGGAGCTTCCAGCACCGATCACGTTCGATTCAGTTAAGTTTTTAATGATG

mRNA sequence

TCTACAAAGGAGATTTGCAATACAAAGATCCTTGAGACGAAAACTTCCTCTGCAGGGTCGATTGAATCACCACCGGCTTTTCCGACTTGGGGTAATGTCGGGTCCAGAGGGTGCCGCCCTGTTAGAACCTCCATTACCACTATACCGAAGCTGTACACATCGCTCTTCTCTGAGACTGTCAATATCGACCCATGTTCTGTAATCATCAGGAGCTTCAAATTCCTGTGGGATCCCCAACCCAGTAGCCTTATTATGTTCTTGTGTCGAATTAATCCCAAAGTACGGATTTCAGAGTTGAAGCCTCCAGATTCGTCGGTTGACCACATTTTCTTCACTGCCACTGTTTTCCCTTTTGGGGTTGTGATTCTGTACACGGCACCGGAGCTTCCAGCACCGATCACGTTCGATTCAGTTAAGTTTTTAATGATG

Coding sequence (CDS)

TCTACAAAGGAGATTTGCAATACAAAGATCCTTGAGACGAAAACTTCCTCTGCAGGGTCGATTGAATCACCACCGGCTTTTCCGACTTGGGGTAATGTCGGGTCCAGAGGGTGCCGCCCTGTTAGAACCTCCATTACCACTATACCGAAGCTGTACACATCGCTCTTCTCTGAGACTGTCAATATCGACCCATGTTCTGTAATCATCAGGAGCTTCAAATTCCTGTGGGATCCCCAACCCAGTAGCCTTATTATGTTCTTGTGTCGAATTAATCCCAAAGTACGGATTTCAGAGTTGAAGCCTCCAGATTCGTCGGTTGACCACATTTTCTTCACTGCCACTGTTTTCCCTTTTGGGGTTGTGATTCTGTACACGGCACCGGAGCTTCCAGCACCGATCACGTTCGATTCAGTTAAGTTTTTAATGATG

Protein sequence

STKEICNTKILETKTSSAGSIESPPAFPTWGNVGSRGCRPVRTSITTIPKLYTSLFSETVNIDPCSVIIRSFKFLWDPQPSSLIMFLCRINPKVRISELKPPDSSVDHIFFTATVFPFGVVILYTAPELPAPITFDSVKFLMM

Homology

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BLAST of Carg24737-RA vs. TrEMBL
Match: tr|A0A2P2NSJ1|A0A2P2NSJ1_RHIMU (Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 4.4e-12
Identity = 37/59 (62.71%), Postives = 43/59 (72.88%), Query Frame = 0


Query: 85  MFLCRINPKVRISELKPPDSSVDHIFFTATVFPFGVVILYTAPELPAPITFDSVKFLMM 144
           MFLC + P VRISEL  PDSS DHIF TA++ PFG++ LYT PELP PIT   V+F  M
Sbjct: 1   MFLCLMEPSVRISELNAPDSSDDHIFLTASISPFGMITLYTTPELPVPITLADVRFRTM 59

The following BLAST results are available for this feature:

BLAST of Carg24737-RA vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg24737-RA vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg24737-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg24737-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A2P2NSJ1\|A0A2P2NSJ1_RHIMU	4.4e-12	62.71	Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg24737	Carg24737	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg24737-RA	Carg24737-RA-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg24737-RA.exon.1	Carg24737-RA.exon.1	exon
Carg24737-RA.exon.2	Carg24737-RA.exon.2	exon
Carg24737-RA.exon.3	Carg24737-RA.exon.3	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg24737-RA.CDS.1	Carg24737-RA.CDS.1	CDS
Carg24737-RA.CDS.2	Carg24737-RA.CDS.2	CDS
Carg24737-RA.CDS.3	Carg24737-RA.CDS.3	CDS